mRNA_S-firma_F_contig10920.1226.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10920.1226.1
Unique NamemRNA_S-firma_F_contig10920.1226.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10920.1226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10920contigS-firma_F_contig10920:548..1760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size739
Cds size666
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10920.1226.1prot_S-firma_F_contig10920.1226.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10920 548..1689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.6109405-CDS-S-firma_F_contig10920:547..6181622815636.6109405-CDS-S-firma_F_contig10920:547..618Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10920 548..618 -
1696949470.0776658-CDS-S-firma_F_contig10920:547..6181696949470.0776658-CDS-S-firma_F_contig10920:547..618Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10920 548..618 -
1622815636.6222622-CDS-S-firma_F_contig10920:1082..16331622815636.6222622-CDS-S-firma_F_contig10920:1082..1633Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10920 1083..1633 -
1696949470.0906518-CDS-S-firma_F_contig10920:1082..16331696949470.0906518-CDS-S-firma_F_contig10920:1082..1633Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10920 1083..1633 -
1622815636.634308-CDS-S-firma_F_contig10920:1645..16891622815636.634308-CDS-S-firma_F_contig10920:1645..1689Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10920 1646..1689 -
1696949470.1039076-CDS-S-firma_F_contig10920:1645..16891696949470.1039076-CDS-S-firma_F_contig10920:1645..1689Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10920 1646..1689 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.6448603-UTR-S-firma_F_contig10920:1689..17601622815636.6448603-UTR-S-firma_F_contig10920:1689..1760Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10920 1690..1760 -
1696949470.1150055-UTR-S-firma_F_contig10920:1689..17601696949470.1150055-UTR-S-firma_F_contig10920:1689..1760Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10920 1690..1760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10920.1226.1

>prot_S-firma_F_contig10920.1226.1 ID=prot_S-firma_F_contig10920.1226.1|Name=mRNA_S-firma_F_contig10920.1226.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=222bp
MPKSETSSSSSSSSSSSAAGVAVHSGGGHPRRFLRGAPSPAAAASPPSPE
ITGKRRITKRGALAIALCVTAASYLSVLWSNSSMALSTAHHHRAGTRNPS
WKDGVAGAPRSHGIADERLPERRWRDAAIAGITARAEGRLRASGGQTAVG
GPGDGGAVAGALGTEGVDERGFAWGQRRDEAPGGMHWPAVLPNTGRSEEG
DKGVDVDSGTRSQHSGTVQRQR
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mRNA from alignment at S-firma_F_contig10920:548..1760-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10920.1226.1 ID=mRNA_S-firma_F_contig10920.1226.1|Name=mRNA_S-firma_F_contig10920.1226.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1213bp|location=Sequence derived from alignment at S-firma_F_contig10920:548..1760- (Sphaerotrichia firma ET2_F female)
CTCTCTCGGCGAATGATACCACCCCAGCCGGTCTTGTTCCACGAGAGGGC
GTGTGAGGAAGCAAACGCAGCATGCCGAAGAGTGAAACATCATCATCATC
ATCATCATCATCATCATCATCATCCTCCTCCTCCGCTGCTGGTGTGGCCG
TCCACTCGGGAGGCGGACACCCCCGCAGGTTTCTTCGCGGCGCCCCCTCC
CCCGCCGCGGCCGCTTCTCCCCCTTCTCCGGAGATAACGGGGAAGAGAAG
AATCACCAAGAGAGGGGCGCTCGCGATCGCCCTGTGCGTTACCGCGGCGT
CCTACCTCTCCGTGCTCTGGTCCAACAGCAGCATGGCGCTGTCGACCGCC
CACCACCACCGCGCCGGCACGCGAAACCCCTCGTGGAAAGACGGAGTCGC
AGGGGCCCCGCGCAGCCACGGCATCGCCGACGAGAGGTTGCCGGAGCGGC
GGTGGCGCGATGCAGCTATCGCGGGCATCACGGCGAGGGCGGAAGGAAGG
CTTCGTGCCTCGGGCGGCCAAACGGCGGTGGGCGGGCCGGGGGACGGTGG
CGCTGTGGCCGGGGCCCTTGGGACGGAAGGCGTGGACGAACGCGGTTTCG
CCTGGGGACAACGGCGTGATGAAGCGCCGGGGGGAATGCATTGGCCGGCG
GTGTTGCCCAACACAGGACGAAGCGAAGGTGCGGGGAGAGGTTGCGTTTT
TTCGGGTTGCGTTTTCCCGCGGGTTGTTGGTGAGAGGTCCTGCTGGTGGG
CCTACGTTTTAGGCGTGTGGTGCTGCTGCTGTTGGGATTGTTGTTGTTAT
TGCATTAACTGGGTTCGGCGATGCGGCAAGGGACGGAAGATATCTTGTGT
CTTGCAAAAGCCCCCCGAGGAAGCTTTTTCACAGGAGCGCGCTTGACGTT
AGTGCTACATAGCACAACAAGACAACTGACACAGGGTTATCCAAGTCCAG
CCGTTCTTGACTGCGTCGCCCCTCGACCGCATGCCTGCGTTCCCACCTGC
ACCCTCCACGTCTCAGCTTACCGCACGAAAAGCTTAAGAAAAACGCTCCT
TTCAAACTCCCAATTGAGTACACCCTTCATGAAGGTCCGGTCTCCGATCC
CCCCCCCCCTCCATCCCCGGAATCGCTGTATTCTTCGAACAGAGGGTGAC
AAGGGCGTGGACGTAGACTCCGGGACACGGTCTCAGCACAGCGGCACCGT
GCAGCGGCAGCGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10920:548..1760-

>mRNA_S-firma_F_contig10920.1226.1 ID=mRNA_S-firma_F_contig10920.1226.1|Name=mRNA_S-firma_F_contig10920.1226.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1332bp|location=Sequence derived from alignment at S-firma_F_contig10920:548..1760- (Sphaerotrichia firma ET2_F female)
ATGCCGAAGAGTGAAACATCATCATCATCATCATCATCATCATCATGCCG
AAGAGTGAAACATCATCATCATCATCATCATCATCATCCTCCTCCGCTGC
TGGTGTGGCCGTCCACTCGGGAGGCGGACACCCCCGCAGGTTTCTTCGCG
GCGCCCCCTCCCCCGCCGCGGCCGCTTCTCCCCCTTCTCCGGAGATAACG
GGGAAGAGAAGAATCACCAAGAGAGGGGCGCTCGCGATCGCCCTGTGCGT
TACCGCGGCGTCCTACCTCTCCGTGCTCTGGTCCAACAGCAGCATGGCGC
TGTCGACCGCCCACCACCACCGCGCCGGCACGCGAAACCCCTCGTGGAAA
GACGGAGTCGCAGGGGCCCCGCGCAGCCACGGCATCGCCGACGAGAGGTT
GCCGGAGCGGCGGTGGCGCGATGCAGCTATCGCGGGCATCACGGCGAGGG
CGGAAGGAAGGCTTCGTGCCTCGGGCGGCCAAACGGCGGTGGGCGGGCCG
GGGGACGGTGGCGCTGTGGCCGGGGCCCTTGGGACGGAAGGCGTGGACGA
ACGCGGTTTCGCCTGGGGACAACGGCGTGATGAAGCGCCGGGGGGAATGC
ATTGGCCGGCGGTGTTGCCCAACACAGGACGAAGCGAAGCTCCTCCGCTG
CTGGTGTGGCCGTCCACTCGGGAGGCGGACACCCCCGCAGGTTTCTTCGC
GGCGCCCCCTCCCCCGCCGCGGCCGCTTCTCCCCCTTCTCCGGAGATAAC
GGGGAAGAGAAGAATCACCAAGAGAGGGGCGCTCGCGATCGCCCTGTGCG
TTACCGCGGCGTCCTACCTCTCCGTGCTCTGGTCCAACAGCAGCATGGCG
CTGTCGACCGCCCACCACCACCGCGCCGGCACGCGAAACCCCTCGTGGAA
AGACGGAGTCGCAGGGGCCCCGCGCAGCCACGGCATCGCCGACGAGAGGT
TGCCGGAGCGGCGGTGGCGCGATGCAGCTATCGCGGGCATCACGGCGAGG
GCGGAAGGAAGGCTTCGTGCCTCGGGCGGCCAAACGGCGGTGGGCGGGCC
GGGGGACGGTGGCGCTGTGGCCGGGGCCCTTGGGACGGAAGGCGTGGACG
AACGCGGTTTCGCCTGGGGACAACGGCGTGATGAAGCGCCGGGGGGAATG
CATTGGCCGGCGGTGTTGCCCAACACAGGACGAAGCGAAGAGGGTGACAA
GGGCGTGGACGTAGACTCCGGGACACGGTCTCAGCACAGCGGCACCGTGC
AGCGGCAGCGGAGGGTGACAAGGGCGTGGACGTAGACTCCGGGACACGGT
CTCAGCACAGCGGCACCGTGCAGCGGCAGCGG
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