mRNA_S-firma_F_contig1091.1218.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1091.1218.1
Unique NamemRNA_S-firma_F_contig1091.1218.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1091.1218.1 vs. uniprot
Match: L8GF92_ACACA (Nicotinamide n-methyltransferase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GF92_ACACA)

HSP 1 Score: 87.4 bits (215), Expect = 1.350e-17
Identity = 65/192 (33.85%), Postives = 97/192 (50.52%), Query Frame = 1
Query:   31 GGVT-LALKCLEELTPLDGLELSE-HIDNTGKCVWPAGRLLAEHLVVRHPDSVKGQTVVEVGAGTGLCGLICRRLGASGVILTDGTLPTVTLCKENAALDVAAEPELCPVSAVCLEWGAPAEGVALVRAHAPAVDVVVASDVLYDDDALGPLLAAVSALESRT----FMLGFVRRCSVTTDDVTAAAAAHGF 588
            G VT L +  +E+L P D   + +   D TG  +WPA   LA HL+   PD  +G+TV+E+GAG GL GL+   L    V++TDG    +++ +EN   +  A PE   V    L+W    +     +    + DV+V SD++Y  +AL  L   V  L + T    F++ +  R     D +   AAAHGF
Sbjct:   18 GRVTSLHIARVEQLAPCDAAGILDGSSDLTGLMLWPAAEALA-HLIATEPDKWRGKTVLELGAGVGLVGLVAS-LFCGQVLITDGEEEVISMIEENLQANKDALPEASRVRCCSLDWTEDLDAWK-AKHDCSSFDVIVGSDIIYSFEALPALFTVVQGLLAHTADAHFLVLYSSRGKRLDDRLPEVAAAHGF 206          
BLAST of mRNA_S-firma_F_contig1091.1218.1 vs. uniprot
Match: A0A836C7F5_9STRA (Putative methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7F5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.240e-17
Identity = 66/178 (37.08%), Postives = 96/178 (53.93%), Query Frame = 1
Query:   88 ELSEHIDNTGKCVWPAGRLLAEHLVVRHPDSVKGQTVVEVGAGTGLCGLICRRLGASGVILTDG--------TLPTVTLCKENAALDVAAEPELCPVSAVCLEWGAPAEGVALVRAHAPAVDVVVASDVLYDDDALGPLLAAVSAL----ESRTFMLGFVRRCSVTTDDVTAAAAAHG 585
            EL + + +TG  VW A R LA H +    D +  +TV+E+GAG GLCG++C +LG S V++TDG            V   + N ++  AA    C V    L WG   +  A ++AH    DVV+A+DV+Y+ +A+ PLL+ V+AL        F+LG+  R +V  D V   A A G
Sbjct:   84 ELGQTLASTGLTVWTAARHLA-HYLFHIRDQIAARTVIELGAGLGLCGILCAKLGGS-VVVTDGGDEFTDEALGALVEQVERNRSVTAAAFE--CAVER--LTWG---DHDAFLKAHREGFDVVIAADVIYEAEAVVPLLSTVTALLQAKPRARFLLGYTHR-NVNIDRVWQEAHARG 251          
BLAST of mRNA_S-firma_F_contig1091.1218.1 vs. uniprot
Match: A0A7S3V6Q2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6Q2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.110e-14
Identity = 61/195 (31.28%), Postives = 93/195 (47.69%), Query Frame = 1
Query:   19 EVVIGGVTLALKCLEELTPLDGLELSEHIDNTGKCVWPAGRLLAEHLVVRHPDSVKGQTVVEVGAGTGLCGLICRRLGASGVILTDGTLPTVTLCKENAALDV---AAEPELCPVSAVCLEWGAPAEGVALVRAHAPAVDVVVASDVLYDDDALGPL----LAAVSALESRTFMLGFVRRCSVTTDDVTAAAAAH 582
            ++ +G +T+ L  +    P         + +TG  +W     L E+L   H + V+G+TVVE+GAG GLCG++  + GAS VILTDG   T+   + N + ++   A    LC      L WG   E     +      D+V+  D+ Y  ++L  L    +  +S     TFML FV R  VT ++V   A  H
Sbjct:   46 KLTLGDITIDLNGIRAKYP-------HLLQSTGMTLWEGSEKLCEYLC-EHSEIVQGKTVVELGAGLGLCGIVAHKHGASRVILTDGDTDTLKNMRMNVSSNIGDNAGNDLLCKQ----LLWGKRVEEFR-EKWEPGGFDIVMGGDIAYAQESLEILFQTAMVLLSTKNGSTFMLSFVFRGGVTIENVADCAKKH 227          
BLAST of mRNA_S-firma_F_contig1091.1218.1 vs. uniprot
Match: A0A7S2XJ33_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJ33_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 5.040e-14
Identity = 54/188 (28.72%), Postives = 91/188 (48.40%), Query Frame = 1
Query:   73 PLDGL--ELSEHIDNTGKCVWPAGRLLAEHLVVRHPDSVKGQTVVEVGAGTGLCGLICRRLGASGVILTDGTLPTVTLCKENAALDVAAEPELCPVSAVC------LEWGAPAEGV--------ALVRAHAPAVDVVVASDVLYDDDALGPLLAAVSALESRT--FMLGFVRRCSVTTDDVTAAAAAH 582
            PL G+  E  + + +TG  +W A  LL  +LV    + V+ +T++E+GAG GLCG++  +LG   V+LTDG   T+   + N  ++     E+   S +       L WG   +            +       D+++ SD++Y ++ + PL   V  L  +   F+L + RR +V+ D V A A  H
Sbjct:   53 PLRGMKAENGQTLHSTGLTLWRASHLLCNYLVSHTKEIVENKTILELGAGLGLCGILAHKLGTRSVVLTDGDTDTLAEMRHNVLINTNQTTEIQDGSKISTITCRQLRWGRNVDTFFEQQKQVQTAINERWNGYDIIMGSDIIYVEEIIEPLFQTVVTLLGKDGKFLLAYARR-NVSIDLVFACAQRH 239          
BLAST of mRNA_S-firma_F_contig1091.1218.1 vs. uniprot
Match: A0A2R5GEE3_9STRA (Protein N-lysine methyltransferase METTL21A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GEE3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.640e-14
Identity = 57/168 (33.93%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  118 KCVWPAGRLLAEHLVVRHPDSVKGQTVVEVGAGTGLCGLICRRLGASGVILTDGTLPTVTLCKENAALDVAAEPELCPVSAVCLEWGAPA------EGVALVRAHAPAVDVVVASDVLYDDDALGPLLAAVSAL-----ESRTFMLGFVRRCSVTTDDVTAAAAAHGF 588
            + VWP+   +A +    +P  V+G+ ++E+G+GTGLCG+   RLGA+ V+LTD    +V L +EN  L+ A +  +C  S   L WG  A      EG+ L        D+VV +DV+Y+ + + PLL +  A       SR F+     R     + V   AA+ GF
Sbjct:  166 RVVWPSAEEMARYFTA-NPSLVRGKRILELGSGTGLCGITMARLGAASVVLTDYNEASVELLQENIDLNSAGD--VC--STARLVWGDDAACAEILEGMGLEH-----FDLVVGTDVVYEPECIQPLLQSARAFLNGSKSSRFFLANHTHRYGTYAELVHTTAASLGF 323          
BLAST of mRNA_S-firma_F_contig1091.1218.1 vs. uniprot
Match: A0A812H2D9_9DINO (EEF1AKMT3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812H2D9_9DINO)

HSP 1 Score: 78.2 bits (191), Expect = 9.110e-14
Identity = 50/124 (40.32%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  106 DNTGKCVWPAGRLLAEHLVVRHPDSVKGQTVVEVGAGTGLCGLICRRLGASGVILTDGTLPTVTLCKENAALDVAAEPELCP----VSAVCLEWGAPAEGVALVRAHAPAVDVVVASDVLYDDD 465
            D+TG  VWP+   +  HL   HP+ V+G+ VVE+GAGTGL GL+C  LGAS V+LTD +   + L K N  L++ A   LC      S   L+WG  A     V+      D+V+  +V+Y  D
Sbjct:  123 DSTGCIVWPSAHSMCAHLCA-HPELVRGKRVVELGAGTGLVGLVCAALGASEVVLTDLS-QGLPLLKRNVQLNLGA---LCDGGHSTSVAELKWGREAS----VQVAPTGCDIVIGCEVIYQHD 237          
BLAST of mRNA_S-firma_F_contig1091.1218.1 vs. uniprot
Match: A0A1W4VGV7_DROFC (protein-lysine N-methyltransferase EEF2KMT n=1 Tax=Drosophila ficusphila TaxID=30025 RepID=A0A1W4VGV7_DROFC)

HSP 1 Score: 77.8 bits (190), Expect = 1.240e-13
Identity = 50/131 (38.17%), Postives = 73/131 (55.73%), Query Frame = 1
Query:  112 TGKCVWPAGRLLAEHLVVRHPDSVKGQTVVEVGAGTGLCGLICR----RLGASGVILTDGTLPTVTLCKENAALDVAAEPELCPVSAVCLEWGAPAEGVALVRAHAPAVDVVVASDVLYDDDALGPLLAAV 492
            TG C W A   L ++L+  H D ++G+ +VE+GAGTGL G++ +    +L    V+LTDG+ P V L +EN AL+    P+     A  L W   +E     R     VDV++A+DV+YDD     LL A+
Sbjct:  122 TGLCTWEAALALGDYLL-HHRDLIRGKNIVELGAGTGLLGILFKLPALKLDVGEVLLTDGSEPCVQLMRENIALNFPDAPKEQIPQAEQLSWNEVSEFPWESRKE---VDVLLAADVIYDDTQFTALLGAL 248          
BLAST of mRNA_S-firma_F_contig1091.1218.1 vs. uniprot
Match: A0A812NMJ9_9DINO (NIP4-2 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812NMJ9_9DINO)

HSP 1 Score: 79.0 bits (193), Expect = 1.250e-13
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  106 DNTGKCVWPAGRLLAEHLVVRHPDSVKGQTVVEVGAGTGLCGLICRRLGASGVILTDGTLPTVTLCKENAALDVAAEPELCPVSAVC-LEWGAPAEGVALVRAHAPAVDVVVASDVLYDDD 465
            D+TG  VWP+   +  HL   HP+ V+G+ VVE+GAGTGL GL+C  LGAS V+LTD +   + L K N  L++AA  +    ++V  L+WG  A     V+      D+V+  +V+Y  D
Sbjct:  851 DSTGCIVWPSAHSMCAHLCA-HPELVRGKRVVELGAGTGLVGLVCAALGASEVVLTDLS-QGLPLLKRNVQLNLAALGDGGHTTSVAELKWGREAS----VQVAPTGCDIVIGCEVIYQHD 965          
BLAST of mRNA_S-firma_F_contig1091.1218.1 vs. uniprot
Match: A0A812RGG1_9DINO (NIP3-1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812RGG1_9DINO)

HSP 1 Score: 79.0 bits (193), Expect = 1.270e-13
Identity = 48/121 (39.67%), Postives = 70/121 (57.85%), Query Frame = 1
Query:  106 DNTGKCVWPAGRLLAEHLVVRHPDSVKGQTVVEVGAGTGLCGLICRRLGASGVILTDGTLPTVTLCKENAALDVAAEPELCPVSAVC-LEWGAPAEGVALVRAHAPAVDVVVASDVLYDDD 465
            D+TG  VWP+   +  HL   HP+ V+G+ VVE+GAGTGL GL+C  LGAS V+LTD +   + L K N  L++ A  +    ++V  L+WG  A     V+      D+V+  +V+Y  D
Sbjct:  710 DSTGCIVWPSAHSMCAHLCA-HPELVRGKRVVELGAGTGLVGLVCAALGASEVVLTDLS-QGLPLLKRNVQLNLGALGDCGAATSVAELKWGREAS----VQVAPAGCDIVIGCEVIYQHD 824          
BLAST of mRNA_S-firma_F_contig1091.1218.1 vs. uniprot
Match: G4Z339_PHYSP (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=G4Z339_PHYSP)

HSP 1 Score: 77.0 bits (188), Expect = 1.470e-13
Identity = 61/168 (36.31%), Postives = 82/168 (48.81%), Query Frame = 1
Query:  106 DNTGKCVWPAGRLLAEHLVVRHPDSVKGQTVVEVGAGTGLCGLICRRLGASGVILTDGTLPTVTLCKENAALDVAAEPELCPVSAVCLEWGAPAEGVALVRAHAPAVDVVVASDVLYDDDALGPLLAAVSALESRT-------FMLGFVRRCSVTTDDVTAAAAAHGF 588
            D TG+ VWP    LA +LV  H + + G+TVVE+GAG GL GL+  +  A    LTDG    + L +ENA     A  +   V A+ L WG      A  RA    VDV++ +DV+     + P+L  +  L  R+       F  GFV R   T D +   A A GF
Sbjct:   53 DLTGQVVWPVSAFLAWYLVT-HREEIAGKTVVELGAGAGLSGLVASQFAAH-TALTDGNDIVLELLEENAE----ANADSSKVQALPLLWGDHESVEAFERAFPHPVDVLIGADVVCWPILVKPILQTIKYLLLRSRNPLETKFCCGFVCRAQSTEDLLFKEAVAFGF 214          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1091.1218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8GF92_ACACA1.350e-1733.85Nicotinamide n-methyltransferase n=1 Tax=Acanthamo... [more]
A0A836C7F5_9STRA6.240e-1737.08Putative methyltransferase-domain-containing prote... [more]
A0A7S3V6Q2_9STRA2.110e-1431.28Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2XJ33_9STRA5.040e-1428.72Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A2R5GEE3_9STRA6.640e-1433.93Protein N-lysine methyltransferase METTL21A n=1 Ta... [more]
A0A812H2D9_9DINO9.110e-1440.32EEF1AKMT3 protein n=1 Tax=Symbiodinium sp. KB8 Tax... [more]
A0A1W4VGV7_DROFC1.240e-1338.17protein-lysine N-methyltransferase EEF2KMT n=1 Tax... [more]
A0A812NMJ9_9DINO1.250e-1340.50NIP4-2 protein n=1 Tax=Symbiodinium sp. CCMP2456 T... [more]
A0A812RGG1_9DINO1.270e-1339.67NIP3-1 protein n=1 Tax=Symbiodinium sp. CCMP2592 T... [more]
G4Z339_PHYSP1.470e-1336.31Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1091contigS-firma_F_contig1091:24789..25376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2850.Phatr35519
PFAMsMethyltransf_16
Max annot lvl2836|Bacillariophyta
Evalue5.32e-17
EggNOG OGsKOG2497@1|root,KOG2497@2759|Eukaryota,2XFN9@2836|Bacillariophyta
DescriptionLysine methyltransferase
COG categoryS
Hectar predicted targeting categoryother localisation
Exons1
Model size588
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.7816389-CDS-S-firma_F_contig1091:24788..253761622815635.7816389-CDS-S-firma_F_contig1091:24788..25376Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1091 24789..25376 -
1696949469.5359495-CDS-S-firma_F_contig1091:24788..253761696949469.5359495-CDS-S-firma_F_contig1091:24788..25376Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1091 24789..25376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1091.1218.1prot_S-firma_F_contig1091.1218.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1091 24789..25376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1091.1218.1

>prot_S-firma_F_contig1091.1218.1 ID=prot_S-firma_F_contig1091.1218.1|Name=mRNA_S-firma_F_contig1091.1218.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=196bp
VEPPSQEVVIGGVTLALKCLEELTPLDGLELSEHIDNTGKCVWPAGRLLA
EHLVVRHPDSVKGQTVVEVGAGTGLCGLICRRLGASGVILTDGTLPTVTL
CKENAALDVAAEPELCPVSAVCLEWGAPAEGVALVRAHAPAVDVVVASDV
LYDDDALGPLLAAVSALESRTFMLGFVRRCSVTTDDVTAAAAAHGF
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mRNA from alignment at S-firma_F_contig1091:24789..25376-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1091.1218.1 ID=mRNA_S-firma_F_contig1091.1218.1|Name=mRNA_S-firma_F_contig1091.1218.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=588bp|location=Sequence derived from alignment at S-firma_F_contig1091:24789..25376- (Sphaerotrichia firma ET2_F female)
GTTGAGCCGCCGTCGCAGGAGGTTGTCATCGGGGGTGTCACCCTCGCCCT GAAGTGCTTGGAGGAGCTGACACCGCTGGACGGACTGGAGCTGTCCGAGC ACATTGACAACACGGGGAAGTGCGTGTGGCCGGCGGGGCGCCTTCTTGCA GAACACTTGGTGGTGCGACACCCAGATTCGGTCAAGGGCCAAACCGTGGT CGAGGTCGGCGCGGGAACTGGTCTATGTGGCCTCATTTGTCGGCGCCTGG GTGCGTCAGGCGTCATCCTCACCGACGGCACGCTGCCGACGGTCACCTTG TGCAAGGAAAACGCGGCGCTGGACGTCGCGGCAGAGCCAGAGCTGTGCCC CGTGTCCGCCGTCTGCCTGGAGTGGGGGGCGCCTGCGGAGGGCGTGGCGC TTGTTCGCGCGCACGCGCCTGCTGTGGACGTGGTTGTGGCCAGCGACGTC CTGTACGACGACGACGCCCTTGGCCCGCTCCTGGCAGCAGTTTCCGCCCT TGAATCCCGCACGTTCATGCTTGGGTTTGTGCGTCGGTGTTCCGTCACGA CTGACGACGTGACGGCAGCTGCGGCGGCGCACGGTTTT
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Coding sequence (CDS) from alignment at S-firma_F_contig1091:24789..25376-

>mRNA_S-firma_F_contig1091.1218.1 ID=mRNA_S-firma_F_contig1091.1218.1|Name=mRNA_S-firma_F_contig1091.1218.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1176bp|location=Sequence derived from alignment at S-firma_F_contig1091:24789..25376- (Sphaerotrichia firma ET2_F female)
GTTGAGCCGCCGTCGCAGGAGGTTGTCATCGGGGGTGTCACCCTCGCCCT
GAAGTGCTTGGAGGAGCTGACACCGCTGGACGGACTGGAGCTGTCCGAGC
ACATTGACAACACGGGGAAGTGCGTGTGGCCGGCGGGGCGCCTTCTTGCA
GAACACTTGGTGGTGCGACACCCAGATTCGGTCAAGGGCCAAACCGTGGT
CGAGGTCGGCGCGGGAACTGGTCTATGTGGCCTCATTTGTCGGCGCCTGG
GTGCGTCAGGCGTCATCCTCACCGACGGCACGCTGCCGACGGTCACCTTG
TGCAAGGAAAACGCGGCGCTGGACGTCGCGGCAGAGCCAGAGCTGTGCCC
CGTGTCCGCCGTCTGCCTGGAGTGGGGGGCGCCTGCGGAGGGCGTGGCGC
TTGTTCGCGCGCACGCGCCTGCTGTGGACGTGGTTGTGGCCAGCGACGTC
CTGTACGACGACGACGCCCTTGGCCCGCTCCTGGCAGCAGTTTCCGCCCT
TGAATCCCGCACGTTCATGCTTGGGTTTGTGCGTCGGTGTTCCGTCACGA
CTGACGACGTGACGGCAGCTGCGGCGGCGCACGGTTTTGTTGAGCCGCCG
TCGCAGGAGGTTGTCATCGGGGGTGTCACCCTCGCCCTGAAGTGCTTGGA
GGAGCTGACACCGCTGGACGGACTGGAGCTGTCCGAGCACATTGACAACA
CGGGGAAGTGCGTGTGGCCGGCGGGGCGCCTTCTTGCAGAACACTTGGTG
GTGCGACACCCAGATTCGGTCAAGGGCCAAACCGTGGTCGAGGTCGGCGC
GGGAACTGGTCTATGTGGCCTCATTTGTCGGCGCCTGGGTGCGTCAGGCG
TCATCCTCACCGACGGCACGCTGCCGACGGTCACCTTGTGCAAGGAAAAC
GCGGCGCTGGACGTCGCGGCAGAGCCAGAGCTGTGCCCCGTGTCCGCCGT
CTGCCTGGAGTGGGGGGCGCCTGCGGAGGGCGTGGCGCTTGTTCGCGCGC
ACGCGCCTGCTGTGGACGTGGTTGTGGCCAGCGACGTCCTGTACGACGAC
GACGCCCTTGGCCCGCTCCTGGCAGCAGTTTCCGCCCTTGAATCCCGCAC
GTTCATGCTTGGGTTTGTGCGTCGGTGTTCCGTCACGACTGACGACGTGA
CGGCAGCTGCGGCGGCGCACGGTTTT
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