mRNA_S-firma_F_contig1091.1211.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1091.1211.1
Unique NamemRNA_S-firma_F_contig1091.1211.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: A0A497E2M8_9BACT (Beta_helix domain-containing protein n=1 Tax=Candidatus Aerophobetes bacterium TaxID=2030807 RepID=A0A497E2M8_9BACT)

HSP 1 Score: 93.2 bits (230), Expect = 7.700e-20
Identity = 52/96 (54.17%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   28 YVSPTGDDSNPGTEAAPFKTLHKAQSAARTLAKA---GGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDLTWK 306
            YVSP GDDSNPGTE  PF TL +AQ A R L K    G + V++R GTYYL E    L F  EDSG +   P +Y AYPGE P ++GG+KL   WK
Sbjct:   12 YVSPDGDDSNPGTEKRPFATLKRAQEAVRKLKKKKKKGAIIVLVREGTYYLKEP---LVFGPEDSG-TKEQPIIYAAYPGEKPTISGGKKLACDWK 103          
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: A0A5Q4GJ13_9PLAN (PDZ domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A5Q4GJ13_9PLAN)

HSP 1 Score: 90.1 bits (222), Expect = 9.440e-19
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   28 YVSPTGDDSNPGTEAAPFKTLHKAQSAARTLAKAGGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDLTWK 306
            +V P GDD +PGT   PF TL +AQ A R  A+  G TV+L+GGTYYL+E    L FTS DSG SA  P V+ A  GET VV+GGR+L L W+
Sbjct:   28 FVGPGGDDGDPGTAERPFATLVRAQQAVRARAEGRGATVLLQGGTYYLDEP---LVFTSADSG-SADAPVVFAAAAGETVVVSGGRRLQLDWR 116          
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: A0A8I2A0G6_9BACT (PDZ domain-containing protein n=2 Tax=unclassified Verrucomicrobia TaxID=417295 RepID=A0A8I2A0G6_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 3.270e-18
Identity = 54/99 (54.55%), Postives = 64/99 (64.65%), Query Frame = 1
Query:   10 AAASTVYVSPTGDDSNPGTEAAPFKTLHKAQSAARTLAKAGGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDLTWK 306
            AAA+  +VSP GDD+N GT   PF T  +AQ AAR  A    VTV LRGGTY L      L FT  DSG   A P V+QA+PGE+PV++GG KLDL W+
Sbjct:   16 AAAAEFHVSPGGDDANAGTRDKPFATPARAQQAARAAAGKEPVTVWLRGGTYALPSP---LVFTPADSGTPDA-PVVWQAFPGESPVISGGLKLDLEWE 110          
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: A0A8G0MQ72_9BACL (Ig-like domain-containing protein n=1 Tax=Paenibacillus sp. sptzw28 TaxID=715179 RepID=A0A8G0MQ72_9BACL)

HSP 1 Score: 87.8 bits (216), Expect = 6.250e-18
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 1
Query:   25 VYVSPTGDDSNPGTEAAPFKTLHKAQSAARTL--AKAGGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDLTWK 306
            +YVSP+GDD NPGTE APF+T+ KAQ+A R L  A  G + V LRGGTY L++E   L F SEDSG +    T Y++YPGE  +++GG+ +D  W+
Sbjct:  408 LYVSPSGDDVNPGTEQAPFRTIAKAQAAVRGLNFAMTGDIVVNLRGGTYVLDKE---LQFASEDSGKNGYFVT-YRSYPGEKAIISGGQTVDGGWE 499          
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: A0A257M2F0_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiales bacterium VVV1 TaxID=2015575 RepID=A0A257M2F0_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 1.430e-17
Identity = 48/95 (50.53%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   13 AASTVYVSPTGDDSNPGTEAAPFKTLHKAQSAARTLAKAGGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDL 297
            AA +++VSPTG+DSNPGT   P  TL  AQ+ AR       VTV+L GGTY+L +    L FT++DSG +   P  Y A PGETPVV+G + L L
Sbjct:   18 AAVSIHVSPTGNDSNPGTSDKPLATLAAAQTLARQSVGHEAVTVLLHGGTYHLQDA---LRFTAQDSG-TKEYPVTYAAVPGETPVVSGAKLLQL 108          
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: A0A849UQL1_9BACT (Uncharacterized protein n=1 Tax=Kiritimatiellaceae bacterium TaxID=2026752 RepID=A0A849UQL1_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 9.550e-17
Identity = 53/112 (47.32%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    1 VNPAAASTVYVSPTGDDSNPGTEAAPFKTLHKAQSAARTL--AKAGGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDLTWKATQLPYGA 330
            + PA+    YV+P G D N G + +PFKT+ +AQ AAR    +K G   V LRGGTY L      + F   DSG +A++P VYQAYPGE PV++GGR LD   K  +L Y A
Sbjct:    1 MTPASCHEFYVAPQGSDQNDGIKDSPFKTVERAQRAARKTDKSKPGKTVVHLRGGTYTLERT---IEFDVRDSG-TASHPVVYQAYPGEQPVLSGGRHLDGWEKVGKLLYQA 108          
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: A0A524KI86_9HYPH (Signaling protein (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A524KI86_9HYPH)

HSP 1 Score: 79.7 bits (195), Expect = 2.830e-16
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   10 AAASTVYVSPTGDDSNPGTEAAPFKTLHKAQSAARTLAKAGGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDLTWK 306
            AAA   +V+P GDD NPGT   PF TL KA+ AAR +      TV L GGT+YL+E    +   ++D+G   A P V++A  G+TPV++GG KL LTW+
Sbjct:   28 AAAGEWFVAPAGDDDNPGTREKPFATLAKARDAARAVPADSPRTVRLLGGTHYLSET--LVLEAAKDTGRKDA-PIVFEAVAGQTPVISGGLKLQLTWR 123          
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: A0A418KXP6_9ACTN (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Jiangella rhizosphaerae TaxID=2293569 RepID=A0A418KXP6_9ACTN)

HSP 1 Score: 82.0 bits (201), Expect = 6.460e-16
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   22 TVYVSPTGDDSNPGTEAAPFKTLHKAQSAARTLAKA--GGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLD 294
            T+ V+P GDD+NPGTEAAP +TL  AQ A R L+    GGV+V+LRGG Y L +    L F + DSG  A +P  + A+PGE PV+ GGR +D
Sbjct:   37 TIVVAPDGDDANPGTEAAPLRTLMAAQQAVRDLSTIPDGGVSVLLRGGRYELPDT---LAFDARDSG-RAGHPVTWAAWPGERPVLDGGRLVD 125          
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: UPI0015C44D56 (discoidin domain-containing protein n=1 Tax=Paenibacillus sp. 32352 TaxID=1969111 RepID=UPI0015C44D56)

HSP 1 Score: 81.3 bits (199), Expect = 1.240e-15
Identity = 53/115 (46.09%), Postives = 67/115 (58.26%), Query Frame = 1
Query:    4 NPAAASTVYVSPTGDDSNPGTEAAPFKTLHKAQSAAR--TLAKAGGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDLTWK-------ATQLP 321
            +PAA    YVSP G D+NPGTEAAPF TL KA+ A +  T +    + V LRGGTY L E     T T  DSG +  +  +Y+AYPGE PV+ GG ++   W+        TQLP
Sbjct:   37 DPAAQQAFYVSPLGSDTNPGTEAAPFATLTKAREAVQAITASATDDIHVYLRGGTYSLYEP---FTLTEADSGKNG-HKVIYEAYPGEKPVLDGGVRVKGEWEHYRQGIYRTQLP 147          
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: UPI0006B6605E (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Bacillus sp. FJAT-28004 TaxID=1679165 RepID=UPI0006B6605E)

HSP 1 Score: 80.5 bits (197), Expect = 2.270e-15
Identity = 45/90 (50.00%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   19 STVYVSPTGDDSNPGTEAAPFKTLHKAQSAARTLAK--AGGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGG 282
            ST YVSPTG+D+NPGT++ PF+T+ KAQ+A R +     G + V+L GGTY L      L FTS+DSG S  N  +Y+A  G TP+++GG
Sbjct:   33 STFYVSPTGNDTNPGTQSQPFQTIEKAQTAVRAINSNMTGDIEVILMGGTYNLTST---LIFTSQDSGTSGFN-VIYKANTGSTPIISGG 118          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A497E2M8_9BACT7.700e-2054.17Beta_helix domain-containing protein n=1 Tax=Candi... [more]
A0A5Q4GJ13_9PLAN9.440e-1954.84PDZ domain-containing protein n=1 Tax=Planctomycet... [more]
A0A8I2A0G6_9BACT3.270e-1854.55PDZ domain-containing protein n=2 Tax=unclassified... [more]
A0A8G0MQ72_9BACL6.250e-1852.08Ig-like domain-containing protein n=1 Tax=Paenibac... [more]
A0A257M2F0_9BACT1.430e-1750.53Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
A0A849UQL1_9BACT9.550e-1747.32Uncharacterized protein n=1 Tax=Kiritimatiellaceae... [more]
A0A524KI86_9HYPH2.830e-1647.47Signaling protein (Fragment) n=1 Tax=Hyphomicrobia... [more]
A0A418KXP6_9ACTN6.460e-1651.61Right-handed parallel beta-helix repeat-containing... [more]
UPI0015C44D561.240e-1546.09discoidin domain-containing protein n=1 Tax=Paenib... [more]
UPI0006B6605E2.270e-1550.00right-handed parallel beta-helix repeat-containing... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1091contigS-firma_F_contig1091:343..672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog1122927.KB895419_gene2538
Max annot lvl91061|Bacilli
Evalue1.07e-16
EggNOG OGsCOG0265@1|root,COG4099@1|root,COG0265@2|Bacteria,COG4099@2|Bacteria,1UNX7@1239|Firmicutes,4IUTQ@91061|Bacilli,2707B@186822|Paenibacillaceae
DescriptionParallel beta-helix repeats
COG categoryO
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.3474379-CDS-S-firma_F_contig1091:342..6721622815635.3474379-CDS-S-firma_F_contig1091:342..672Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1091 343..672 +
1696949469.2497776-CDS-S-firma_F_contig1091:342..6721696949469.2497776-CDS-S-firma_F_contig1091:342..672Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1091 343..672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1091.1211.1prot_S-firma_F_contig1091.1211.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1091 343..672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1091.1211.1

>prot_S-firma_F_contig1091.1211.1 ID=prot_S-firma_F_contig1091.1211.1|Name=mRNA_S-firma_F_contig1091.1211.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=110bp
VNPAAASTVYVSPTGDDSNPGTEAAPFKTLHKAQSAARTLAKAGGVTVML
RGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDLT
WKATQLPYGA
back to top

mRNA from alignment at S-firma_F_contig1091:343..672+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1091.1211.1 ID=mRNA_S-firma_F_contig1091.1211.1|Name=mRNA_S-firma_F_contig1091.1211.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=330bp|location=Sequence derived from alignment at S-firma_F_contig1091:343..672+ (Sphaerotrichia firma ET2_F female)
GTGAACCCGGCGGCGGCATCCACCGTGTACGTGTCCCCCACGGGTGACGA CTCCAACCCCGGCACCGAGGCGGCGCCGTTCAAGACCCTGCACAAGGCGC AGTCTGCGGCCCGAACGCTGGCCAAGGCCGGTGGCGTGACGGTGATGCTG CGCGGCGGGACGTACTACCTGAACGAGGAGGGCGGCAAGCTGACGTTTAC GTCTGAGGACAGCGGCTTCAGCGCGGCCAACCCCACGGTGTACCAGGCGT ACCCCGGGGAGACGCCCGTCGTTGCTGGTGGCCGCAAGCTGGACCTGACG TGGAAGGCGACGCAGCTGCCGTACGGGGCG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1091:343..672+

>mRNA_S-firma_F_contig1091.1211.1 ID=mRNA_S-firma_F_contig1091.1211.1|Name=mRNA_S-firma_F_contig1091.1211.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=660bp|location=Sequence derived from alignment at S-firma_F_contig1091:343..672+ (Sphaerotrichia firma ET2_F female)
GTGAACCCGGCGGCGGCATCCACCGTGTACGTGTCCCCCACGGGTGACGA
CTCCAACCCCGGCACCGAGGCGGCGCCGTTCAAGACCCTGCACAAGGCGC
AGTCTGCGGCCCGAACGCTGGCCAAGGCCGGTGGCGTGACGGTGATGCTG
CGCGGCGGGACGTACTACCTGAACGAGGAGGGCGGCAAGCTGACGTTTAC
GTCTGAGGACAGCGGCTTCAGCGCGGCCAACCCCACGGTGTACCAGGCGT
ACCCCGGGGAGACGCCCGTCGTTGCTGGTGGCCGCAAGCTGGACCTGACG
TGGAAGGCGACGCAGCTGCCGTACGGGGCGGTGAACCCGGCGGCGGCATC
CACCGTGTACGTGTCCCCCACGGGTGACGACTCCAACCCCGGCACCGAGG
CGGCGCCGTTCAAGACCCTGCACAAGGCGCAGTCTGCGGCCCGAACGCTG
GCCAAGGCCGGTGGCGTGACGGTGATGCTGCGCGGCGGGACGTACTACCT
GAACGAGGAGGGCGGCAAGCTGACGTTTACGTCTGAGGACAGCGGCTTCA
GCGCGGCCAACCCCACGGTGTACCAGGCGTACCCCGGGGAGACGCCCGTC
GTTGCTGGTGGCCGCAAGCTGGACCTGACGTGGAAGGCGACGCAGCTGCC
GTACGGGGCG
back to top