mRNA_S-firma_F_contig1091.1211.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: A0A497E2M8_9BACT (Beta_helix domain-containing protein n=1 Tax=Candidatus Aerophobetes bacterium TaxID=2030807 RepID=A0A497E2M8_9BACT) HSP 1 Score: 93.2 bits (230), Expect = 7.700e-20 Identity = 52/96 (54.17%), Postives = 61/96 (63.54%), Query Frame = 1
Query: 28 YVSPTGDDSNPGTEAAPFKTLHKAQSAARTLAKA---GGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDLTWK 306
YVSP GDDSNPGTE PF TL +AQ A R L K G + V++R GTYYL E L F EDSG + P +Y AYPGE P ++GG+KL WK
Sbjct: 12 YVSPDGDDSNPGTEKRPFATLKRAQEAVRKLKKKKKKGAIIVLVREGTYYLKEP---LVFGPEDSG-TKEQPIIYAAYPGEKPTISGGKKLACDWK 103
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: A0A5Q4GJ13_9PLAN (PDZ domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A5Q4GJ13_9PLAN) HSP 1 Score: 90.1 bits (222), Expect = 9.440e-19 Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 1
Query: 28 YVSPTGDDSNPGTEAAPFKTLHKAQSAARTLAKAGGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDLTWK 306
+V P GDD +PGT PF TL +AQ A R A+ G TV+L+GGTYYL+E L FTS DSG SA P V+ A GET VV+GGR+L L W+
Sbjct: 28 FVGPGGDDGDPGTAERPFATLVRAQQAVRARAEGRGATVLLQGGTYYLDEP---LVFTSADSG-SADAPVVFAAAAGETVVVSGGRRLQLDWR 116
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: A0A8I2A0G6_9BACT (PDZ domain-containing protein n=2 Tax=unclassified Verrucomicrobia TaxID=417295 RepID=A0A8I2A0G6_9BACT) HSP 1 Score: 88.6 bits (218), Expect = 3.270e-18 Identity = 54/99 (54.55%), Postives = 64/99 (64.65%), Query Frame = 1
Query: 10 AAASTVYVSPTGDDSNPGTEAAPFKTLHKAQSAARTLAKAGGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDLTWK 306
AAA+ +VSP GDD+N GT PF T +AQ AAR A VTV LRGGTY L L FT DSG A P V+QA+PGE+PV++GG KLDL W+
Sbjct: 16 AAAAEFHVSPGGDDANAGTRDKPFATPARAQQAARAAAGKEPVTVWLRGGTYALPSP---LVFTPADSGTPDA-PVVWQAFPGESPVISGGLKLDLEWE 110
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: A0A8G0MQ72_9BACL (Ig-like domain-containing protein n=1 Tax=Paenibacillus sp. sptzw28 TaxID=715179 RepID=A0A8G0MQ72_9BACL) HSP 1 Score: 87.8 bits (216), Expect = 6.250e-18 Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 1
Query: 25 VYVSPTGDDSNPGTEAAPFKTLHKAQSAARTL--AKAGGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDLTWK 306
+YVSP+GDD NPGTE APF+T+ KAQ+A R L A G + V LRGGTY L++E L F SEDSG + T Y++YPGE +++GG+ +D W+
Sbjct: 408 LYVSPSGDDVNPGTEQAPFRTIAKAQAAVRGLNFAMTGDIVVNLRGGTYVLDKE---LQFASEDSGKNGYFVT-YRSYPGEKAIISGGQTVDGGWE 499
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: A0A257M2F0_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiales bacterium VVV1 TaxID=2015575 RepID=A0A257M2F0_9BACT) HSP 1 Score: 80.9 bits (198), Expect = 1.430e-17 Identity = 48/95 (50.53%), Postives = 61/95 (64.21%), Query Frame = 1
Query: 13 AASTVYVSPTGDDSNPGTEAAPFKTLHKAQSAARTLAKAGGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDL 297
AA +++VSPTG+DSNPGT P TL AQ+ AR VTV+L GGTY+L + L FT++DSG + P Y A PGETPVV+G + L L
Sbjct: 18 AAVSIHVSPTGNDSNPGTSDKPLATLAAAQTLARQSVGHEAVTVLLHGGTYHLQDA---LRFTAQDSG-TKEYPVTYAAVPGETPVVSGAKLLQL 108
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: A0A849UQL1_9BACT (Uncharacterized protein n=1 Tax=Kiritimatiellaceae bacterium TaxID=2026752 RepID=A0A849UQL1_9BACT) HSP 1 Score: 84.3 bits (207), Expect = 9.550e-17 Identity = 53/112 (47.32%), Postives = 68/112 (60.71%), Query Frame = 1
Query: 1 VNPAAASTVYVSPTGDDSNPGTEAAPFKTLHKAQSAARTL--AKAGGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDLTWKATQLPYGA 330
+ PA+ YV+P G D N G + +PFKT+ +AQ AAR +K G V LRGGTY L + F DSG +A++P VYQAYPGE PV++GGR LD K +L Y A
Sbjct: 1 MTPASCHEFYVAPQGSDQNDGIKDSPFKTVERAQRAARKTDKSKPGKTVVHLRGGTYTLERT---IEFDVRDSG-TASHPVVYQAYPGEQPVLSGGRHLDGWEKVGKLLYQA 108
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: A0A524KI86_9HYPH (Signaling protein (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A524KI86_9HYPH) HSP 1 Score: 79.7 bits (195), Expect = 2.830e-16 Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 1
Query: 10 AAASTVYVSPTGDDSNPGTEAAPFKTLHKAQSAARTLAKAGGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDLTWK 306
AAA +V+P GDD NPGT PF TL KA+ AAR + TV L GGT+YL+E + ++D+G A P V++A G+TPV++GG KL LTW+
Sbjct: 28 AAAGEWFVAPAGDDDNPGTREKPFATLAKARDAARAVPADSPRTVRLLGGTHYLSET--LVLEAAKDTGRKDA-PIVFEAVAGQTPVISGGLKLQLTWR 123
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: A0A418KXP6_9ACTN (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Jiangella rhizosphaerae TaxID=2293569 RepID=A0A418KXP6_9ACTN) HSP 1 Score: 82.0 bits (201), Expect = 6.460e-16 Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1
Query: 22 TVYVSPTGDDSNPGTEAAPFKTLHKAQSAARTLAKA--GGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLD 294
T+ V+P GDD+NPGTEAAP +TL AQ A R L+ GGV+V+LRGG Y L + L F + DSG A +P + A+PGE PV+ GGR +D
Sbjct: 37 TIVVAPDGDDANPGTEAAPLRTLMAAQQAVRDLSTIPDGGVSVLLRGGRYELPDT---LAFDARDSG-RAGHPVTWAAWPGERPVLDGGRLVD 125
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: UPI0015C44D56 (discoidin domain-containing protein n=1 Tax=Paenibacillus sp. 32352 TaxID=1969111 RepID=UPI0015C44D56) HSP 1 Score: 81.3 bits (199), Expect = 1.240e-15 Identity = 53/115 (46.09%), Postives = 67/115 (58.26%), Query Frame = 1
Query: 4 NPAAASTVYVSPTGDDSNPGTEAAPFKTLHKAQSAAR--TLAKAGGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGGRKLDLTWK-------ATQLP 321
+PAA YVSP G D+NPGTEAAPF TL KA+ A + T + + V LRGGTY L E T T DSG + + +Y+AYPGE PV+ GG ++ W+ TQLP
Sbjct: 37 DPAAQQAFYVSPLGSDTNPGTEAAPFATLTKAREAVQAITASATDDIHVYLRGGTYSLYEP---FTLTEADSGKNG-HKVIYEAYPGEKPVLDGGVRVKGEWEHYRQGIYRTQLP 147
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Match: UPI0006B6605E (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Bacillus sp. FJAT-28004 TaxID=1679165 RepID=UPI0006B6605E) HSP 1 Score: 80.5 bits (197), Expect = 2.270e-15 Identity = 45/90 (50.00%), Postives = 61/90 (67.78%), Query Frame = 1
Query: 19 STVYVSPTGDDSNPGTEAAPFKTLHKAQSAARTLAK--AGGVTVMLRGGTYYLNEEGGKLTFTSEDSGFSAANPTVYQAYPGETPVVAGG 282
ST YVSPTG+D+NPGT++ PF+T+ KAQ+A R + G + V+L GGTY L L FTS+DSG S N +Y+A G TP+++GG
Sbjct: 33 STFYVSPTGNDTNPGTQSQPFQTIEKAQTAVRAINSNMTGDIEVILMGGTYNLTST---LIFTSQDSGTSGFN-VIYKANTGSTPIISGG 118 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1091.1211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1091.1211.1 >prot_S-firma_F_contig1091.1211.1 ID=prot_S-firma_F_contig1091.1211.1|Name=mRNA_S-firma_F_contig1091.1211.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=110bp VNPAAASTVYVSPTGDDSNPGTEAAPFKTLHKAQSAARTLAKAGGVTVMLback to top mRNA from alignment at S-firma_F_contig1091:343..672+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1091.1211.1 ID=mRNA_S-firma_F_contig1091.1211.1|Name=mRNA_S-firma_F_contig1091.1211.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=330bp|location=Sequence derived from alignment at S-firma_F_contig1091:343..672+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1091:343..672+ >mRNA_S-firma_F_contig1091.1211.1 ID=mRNA_S-firma_F_contig1091.1211.1|Name=mRNA_S-firma_F_contig1091.1211.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=660bp|location=Sequence derived from alignment at S-firma_F_contig1091:343..672+ (Sphaerotrichia firma ET2_F female)back to top |