mRNA_S-firma_F_contig10904.1207.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10904.1207.1
Unique NamemRNA_S-firma_F_contig10904.1207.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: A0A5A8ELK1_CAFRO (UBC core domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ELK1_CAFRO)

HSP 1 Score: 89.4 bits (220), Expect = 1.070e-18
Identity = 39/91 (42.86%), Postives = 64/91 (70.33%), Query Frame = 1
Query:   28 GIQVEAVNDDVHKWLVQFRNFAD-TPLRRGMNRLL--DKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP 291
            G+  E V DDV++W+V+ R F   + + +G+ RL+  D+ GY Y+EL  SF +GL+PF+PP +++VRPRL G A+W+V+ +  ++L +W P
Sbjct:  289 GLVAEPVGDDVYQWVVKLRKFPPKSAVAKGLRRLVEDDRFGYDYVELQFSFAKGLHPFYPPSVQVVRPRLAGAAMWRVMNLAPLQLENWKP 379          
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: UPI001458A714 (uncharacterized protein LOC117326577 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458A714)

HSP 1 Score: 87.0 bits (214), Expect = 7.040e-18
Identity = 34/92 (36.96%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   16 QDRLGIQVEAVNDDVHKWLVQFRNFADTPLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP 291
            +  +G   E + D+++ W V+  NFA++ L + +  + +K GY Y+EL ++F   LYPF+PPL++++RPRLQG+ + +V  M+ ++L++W P
Sbjct:  219 EQEVGFTAEPIEDNIYNWRVKIFNFAESDLAKDLREIKEKFGYNYIELEMTFEIDLYPFYPPLVKVMRPRLQGSMMQRVTNMELLKLSYWCP 310          
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: A0A7R9K3D3_TIMGE (Hypothetical protein n=7 Tax=Timema TaxID=61471 RepID=A0A7R9K3D3_TIMGE)

HSP 1 Score: 86.3 bits (212), Expect = 1.280e-17
Identity = 37/98 (37.76%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    1 MAKTDQDRLGIQVEAVNDDVHKWLVQFRNF-ADTPLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP 291
            + K+ +D  GI+V+ +ND++++W V+F  F  ++ L R +  L +K GY Y+EL + F   LYPF+PP+ +++RPRLQ + + +V  M+ ++L+ W+P
Sbjct:  232 LLKSKEDN-GIKVKPINDNIYQWSVKFSKFDPESALHRDLQELKEKHGYDYIELQMEFTMDLYPFYPPIAKILRPRLQSSMMLQVANMEVLKLSRWNP 328          
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: UPI000C78891B (uncharacterized protein LOC111706168 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78891B)

HSP 1 Score: 86.3 bits (212), Expect = 1.280e-17
Identity = 35/88 (39.77%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   28 GIQVEAVNDDVHKWLVQFRNFADTPLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP 291
            G+  + V+D++ +W V+  NF  T L   + ++ ++ GY Y+EL L F   LYPFFPPL++++RPRLQG+ + +V  M+ ++L +W P
Sbjct:  246 GVVADTVDDNIFQWNVKLSNFQGTKLNEDLMKVNEEFGYDYIELQLDFSMDLYPFFPPLVKVIRPRLQGSMMLRVTTMEILKLTYWDP 333          
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: A0A6H5JJJ1_9PHAE (UBC core domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ1_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.360e-17
Identity = 36/92 (39.13%), Postives = 62/92 (67.39%), Query Frame = 1
Query:   16 QDRLGIQVEAVNDDVHKWLVQFRNFAD-TPLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWS 288
            +  LG++VEAV+D++  W V+    +D +PLR  + +L     Y Y+E+ L+F   LYPF+PPL++LVRPR QG  + ++ +++ ++L+ WS
Sbjct:   47 EQELGMEVEAVDDNIFHWKVKINRVSDASPLREDLEKLRQTYAYGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEILQLSKWS 138          
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: A0A2J7RDV1_9NEOP (UBC core domain-containing protein n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RDV1_9NEOP)

HSP 1 Score: 84.7 bits (208), Expect = 4.400e-17
Identity = 37/91 (40.66%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   22 RLGIQVEAVNDDVHKWLVQFRNF-ADTPLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP 291
            + GI  E ++D+++KW V   +F +   L + + +L  K GY Y+EL L F   LYPF+PP++++VRPRLQG+ + +V +M  ++L+HW+P
Sbjct:  226 KTGINAEPIDDNIYKWAVFLSSFDSQGNLNQDLLQLYQKYGYNYVELQLDFTMDLYPFYPPVVKVVRPRLQGSMMLRVASMDMLKLSHWNP 316          
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: A0A2J7RDW0_9NEOP (Uncharacterized protein n=5 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RDW0_9NEOP)

HSP 1 Score: 84.7 bits (208), Expect = 4.430e-17
Identity = 37/91 (40.66%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   22 RLGIQVEAVNDDVHKWLVQFRNF-ADTPLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP 291
            + GI  E ++D+++KW V   +F +   L + + +L  K GY Y+EL L F   LYPF+PP++++VRPRLQG+ + +V +M  ++L+HW+P
Sbjct:   78 KTGINAEPIDDNIYKWAVFLSSFDSQGNLNQDLLQLYQKYGYNYVELQLDFTMDLYPFYPPVVKVVRPRLQGSMMLRVASMDMLKLSHWNP 168          
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: D7FMN8_ECTSI (Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN8_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 4.500e-17
Identity = 37/92 (40.22%), Postives = 62/92 (67.39%), Query Frame = 1
Query:   16 QDRLGIQVEAVNDDVHKWLVQFRNFADT-PLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWS 288
            +  LG++VEAV+D++  W V+    +DT PLR  + +L     Y Y+E+ L+F   LYPF+PPL++LVRPR QG  + ++ +++ ++L+ WS
Sbjct:  244 EQELGMEVEAVDDNIFHWKVKINRVSDTSPLREDLEKLRQTYAYGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEMLQLSKWS 335          
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: A0A7R9CD78_TIMCR (Hypothetical protein n=1 Tax=Timema cristinae TaxID=61476 RepID=A0A7R9CD78_TIMCR)

HSP 1 Score: 84.3 bits (207), Expect = 5.670e-17
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = 1
Query:   13 DQDRLGIQVEAVNDDVHKWLVQFRNF-ADTPLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP 291
            ++D  G+ V  +ND++++W V+F  F  ++ L   +  L  K GY Y+EL L F   LYPF+PP+ ++VRPRL+G  + +V  M+ ++L+ W+P
Sbjct:   10 EKDNTGVTVHPINDNIYQWSVKFSKFDPESALHHDLQELKMKYGYDYIELQLEFTMDLYPFYPPVAKVVRPRLEGDVMLQVANMEVLKLSQWNP 103          
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: A0A1S3KE17_LINUN (baculoviral IAP repeat-containing protein 6 isoform X1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KE17_LINUN)

HSP 1 Score: 82.0 bits (201), Expect = 3.930e-16
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 1
Query:   13 DQDRLGIQVEAVNDDVHKWLVQFRNFA-DTPLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP 291
            ++  LG   + ++D++++W V+   F  D+ L R +  +  + GY Y+EL + F   LYPF+PPL++++RPRLQG+ + +V  M+ ++L++W+P
Sbjct:  223 EEQNLGFSADPIDDNIYQWCVKLYTFQEDSDLARELAEICARDGYNYIELQMDFAIDLYPFYPPLVKVIRPRLQGSMMQRVTNMEMLKLSYWNP 316          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8ELK1_CAFRO1.070e-1842.86UBC core domain-containing protein n=5 Tax=Cafeter... [more]
UPI001458A7147.040e-1836.96uncharacterized protein LOC117326577 n=1 Tax=Pecte... [more]
A0A7R9K3D3_TIMGE1.280e-1737.76Hypothetical protein n=7 Tax=Timema TaxID=61471 Re... [more]
UPI000C78891B1.280e-1739.77uncharacterized protein LOC111706168 n=1 Tax=Euryt... [more]
A0A6H5JJJ1_9PHAE1.360e-1739.13UBC core domain-containing protein (Fragment) n=1 ... [more]
A0A2J7RDV1_9NEOP4.400e-1740.66UBC core domain-containing protein n=2 Tax=Cryptot... [more]
A0A2J7RDW0_9NEOP4.430e-1740.66Uncharacterized protein n=5 Tax=Cryptotermes secun... [more]
D7FMN8_ECTSI4.500e-1740.22Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A7R9CD78_TIMCR5.670e-1738.30Hypothetical protein n=1 Tax=Timema cristinae TaxI... [more]
A0A1S3KE17_LINUN3.930e-1635.11baculoviral IAP repeat-containing protein 6 isofor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10904contigS-firma_F_contig10904:4513..4803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FMN8
PFAMsPARP,UQ_con
Max annot lvl2759|Eukaryota
KEGG koko:K10582,ko:K10586
KEGG Pathwayko04120,ko04214,ko04215,map04120,map04214,map04215
Evalue7.38e-18
EggNOG OGsCOG5078@1|root,KOG0897@1|root,KOG0895@2759|Eukaryota,KOG0897@2759|Eukaryota
EC2.3.2.23
Descriptionubiquitin conjugating enzyme activity
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.054622-CDS-S-firma_F_contig10904:4512..48031622815635.054622-CDS-S-firma_F_contig10904:4512..4803Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10904 4513..4803 +
1696949469.0854921-CDS-S-firma_F_contig10904:4512..48031696949469.0854921-CDS-S-firma_F_contig10904:4512..4803Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10904 4513..4803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10904.1207.1prot_S-firma_F_contig10904.1207.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10904 4513..4803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10904.1207.1

>prot_S-firma_F_contig10904.1207.1 ID=prot_S-firma_F_contig10904.1207.1|Name=mRNA_S-firma_F_contig10904.1207.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=97bp
MAKTDQDRLGIQVEAVNDDVHKWLVQFRNFADTPLRRGMNRLLDKRGYCY
LELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP
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mRNA from alignment at S-firma_F_contig10904:4513..4803+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10904.1207.1 ID=mRNA_S-firma_F_contig10904.1207.1|Name=mRNA_S-firma_F_contig10904.1207.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=291bp|location=Sequence derived from alignment at S-firma_F_contig10904:4513..4803+ (Sphaerotrichia firma ET2_F female)
ATGGCCAAAACTGACCAAGATCGGCTTGGGATCCAGGTCGAAGCCGTCAA TGACGACGTCCACAAGTGGCTGGTGCAATTCCGCAACTTTGCTGACACGC CGCTGCGCCGTGGCATGAACCGCCTGCTGGACAAGCGAGGGTACTGCTAC CTGGAGCTCATCTTGAGTTTCCCCCGCGGCCTGTACCCGTTTTTCCCGCC CCTGCTGGAACTAGTACGCCCCCGCTTGCAGGGCACCGCCGTGTGGAAGG TGATTGCCATGAAGGATGTGCGGCTGGCGCACTGGAGCCCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10904:4513..4803+

>mRNA_S-firma_F_contig10904.1207.1 ID=mRNA_S-firma_F_contig10904.1207.1|Name=mRNA_S-firma_F_contig10904.1207.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=582bp|location=Sequence derived from alignment at S-firma_F_contig10904:4513..4803+ (Sphaerotrichia firma ET2_F female)
ATGGCCAAAACTGACCAAGATCGGCTTGGGATCCAGGTCGAAGCCGTCAA
TGACGACGTCCACAAGTGGCTGGTGCAATTCCGCAACTTTGCTGACACGC
CGCTGCGCCGTGGCATGAACCGCCTGCTGGACAAGCGAGGGTACTGCTAC
CTGGAGCTCATCTTGAGTTTCCCCCGCGGCCTGTACCCGTTTTTCCCGCC
CCTGCTGGAACTAGTACGCCCCCGCTTGCAGGGCACCGCCGTGTGGAAGG
TGATTGCCATGAAGGATGTGCGGCTGGCGCACTGGAGCCCGATGGCCAAA
ACTGACCAAGATCGGCTTGGGATCCAGGTCGAAGCCGTCAATGACGACGT
CCACAAGTGGCTGGTGCAATTCCGCAACTTTGCTGACACGCCGCTGCGCC
GTGGCATGAACCGCCTGCTGGACAAGCGAGGGTACTGCTACCTGGAGCTC
ATCTTGAGTTTCCCCCGCGGCCTGTACCCGTTTTTCCCGCCCCTGCTGGA
ACTAGTACGCCCCCGCTTGCAGGGCACCGCCGTGTGGAAGGTGATTGCCA
TGAAGGATGTGCGGCTGGCGCACTGGAGCCCG
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