mRNA_S-firma_F_contig10904.1207.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: A0A5A8ELK1_CAFRO (UBC core domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ELK1_CAFRO) HSP 1 Score: 89.4 bits (220), Expect = 1.070e-18 Identity = 39/91 (42.86%), Postives = 64/91 (70.33%), Query Frame = 1
Query: 28 GIQVEAVNDDVHKWLVQFRNFAD-TPLRRGMNRLL--DKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP 291
G+ E V DDV++W+V+ R F + + +G+ RL+ D+ GY Y+EL SF +GL+PF+PP +++VRPRL G A+W+V+ + ++L +W P
Sbjct: 289 GLVAEPVGDDVYQWVVKLRKFPPKSAVAKGLRRLVEDDRFGYDYVELQFSFAKGLHPFYPPSVQVVRPRLAGAAMWRVMNLAPLQLENWKP 379
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: UPI001458A714 (uncharacterized protein LOC117326577 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458A714) HSP 1 Score: 87.0 bits (214), Expect = 7.040e-18 Identity = 34/92 (36.96%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 16 QDRLGIQVEAVNDDVHKWLVQFRNFADTPLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP 291
+ +G E + D+++ W V+ NFA++ L + + + +K GY Y+EL ++F LYPF+PPL++++RPRLQG+ + +V M+ ++L++W P
Sbjct: 219 EQEVGFTAEPIEDNIYNWRVKIFNFAESDLAKDLREIKEKFGYNYIELEMTFEIDLYPFYPPLVKVMRPRLQGSMMQRVTNMELLKLSYWCP 310
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: A0A7R9K3D3_TIMGE (Hypothetical protein n=7 Tax=Timema TaxID=61471 RepID=A0A7R9K3D3_TIMGE) HSP 1 Score: 86.3 bits (212), Expect = 1.280e-17 Identity = 37/98 (37.76%), Postives = 67/98 (68.37%), Query Frame = 1
Query: 1 MAKTDQDRLGIQVEAVNDDVHKWLVQFRNF-ADTPLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP 291
+ K+ +D GI+V+ +ND++++W V+F F ++ L R + L +K GY Y+EL + F LYPF+PP+ +++RPRLQ + + +V M+ ++L+ W+P
Sbjct: 232 LLKSKEDN-GIKVKPINDNIYQWSVKFSKFDPESALHRDLQELKEKHGYDYIELQMEFTMDLYPFYPPIAKILRPRLQSSMMLQVANMEVLKLSRWNP 328
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: UPI000C78891B (uncharacterized protein LOC111706168 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78891B) HSP 1 Score: 86.3 bits (212), Expect = 1.280e-17 Identity = 35/88 (39.77%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 28 GIQVEAVNDDVHKWLVQFRNFADTPLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP 291
G+ + V+D++ +W V+ NF T L + ++ ++ GY Y+EL L F LYPFFPPL++++RPRLQG+ + +V M+ ++L +W P
Sbjct: 246 GVVADTVDDNIFQWNVKLSNFQGTKLNEDLMKVNEEFGYDYIELQLDFSMDLYPFFPPLVKVIRPRLQGSMMLRVTTMEILKLTYWDP 333
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: A0A6H5JJJ1_9PHAE (UBC core domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ1_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 1.360e-17 Identity = 36/92 (39.13%), Postives = 62/92 (67.39%), Query Frame = 1
Query: 16 QDRLGIQVEAVNDDVHKWLVQFRNFAD-TPLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWS 288
+ LG++VEAV+D++ W V+ +D +PLR + +L Y Y+E+ L+F LYPF+PPL++LVRPR QG + ++ +++ ++L+ WS
Sbjct: 47 EQELGMEVEAVDDNIFHWKVKINRVSDASPLREDLEKLRQTYAYGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEILQLSKWS 138
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: A0A2J7RDV1_9NEOP (UBC core domain-containing protein n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RDV1_9NEOP) HSP 1 Score: 84.7 bits (208), Expect = 4.400e-17 Identity = 37/91 (40.66%), Postives = 62/91 (68.13%), Query Frame = 1
Query: 22 RLGIQVEAVNDDVHKWLVQFRNF-ADTPLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP 291
+ GI E ++D+++KW V +F + L + + +L K GY Y+EL L F LYPF+PP++++VRPRLQG+ + +V +M ++L+HW+P
Sbjct: 226 KTGINAEPIDDNIYKWAVFLSSFDSQGNLNQDLLQLYQKYGYNYVELQLDFTMDLYPFYPPVVKVVRPRLQGSMMLRVASMDMLKLSHWNP 316
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: A0A2J7RDW0_9NEOP (Uncharacterized protein n=5 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RDW0_9NEOP) HSP 1 Score: 84.7 bits (208), Expect = 4.430e-17 Identity = 37/91 (40.66%), Postives = 62/91 (68.13%), Query Frame = 1
Query: 22 RLGIQVEAVNDDVHKWLVQFRNF-ADTPLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP 291
+ GI E ++D+++KW V +F + L + + +L K GY Y+EL L F LYPF+PP++++VRPRLQG+ + +V +M ++L+HW+P
Sbjct: 78 KTGINAEPIDDNIYKWAVFLSSFDSQGNLNQDLLQLYQKYGYNYVELQLDFTMDLYPFYPPVVKVVRPRLQGSMMLRVASMDMLKLSHWNP 168
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: D7FMN8_ECTSI (Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN8_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 4.500e-17 Identity = 37/92 (40.22%), Postives = 62/92 (67.39%), Query Frame = 1
Query: 16 QDRLGIQVEAVNDDVHKWLVQFRNFADT-PLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWS 288
+ LG++VEAV+D++ W V+ +DT PLR + +L Y Y+E+ L+F LYPF+PPL++LVRPR QG + ++ +++ ++L+ WS
Sbjct: 244 EQELGMEVEAVDDNIFHWKVKINRVSDTSPLREDLEKLRQTYAYGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEMLQLSKWS 335
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: A0A7R9CD78_TIMCR (Hypothetical protein n=1 Tax=Timema cristinae TaxID=61476 RepID=A0A7R9CD78_TIMCR) HSP 1 Score: 84.3 bits (207), Expect = 5.670e-17 Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = 1
Query: 13 DQDRLGIQVEAVNDDVHKWLVQFRNF-ADTPLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP 291
++D G+ V +ND++++W V+F F ++ L + L K GY Y+EL L F LYPF+PP+ ++VRPRL+G + +V M+ ++L+ W+P
Sbjct: 10 EKDNTGVTVHPINDNIYQWSVKFSKFDPESALHHDLQELKMKYGYDYIELQLEFTMDLYPFYPPVAKVVRPRLEGDVMLQVANMEVLKLSQWNP 103
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Match: A0A1S3KE17_LINUN (baculoviral IAP repeat-containing protein 6 isoform X1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KE17_LINUN) HSP 1 Score: 82.0 bits (201), Expect = 3.930e-16 Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 1
Query: 13 DQDRLGIQVEAVNDDVHKWLVQFRNFA-DTPLRRGMNRLLDKRGYCYLELILSFPRGLYPFFPPLLELVRPRLQGTAVWKVIAMKDVRLAHWSP 291
++ LG + ++D++++W V+ F D+ L R + + + GY Y+EL + F LYPF+PPL++++RPRLQG+ + +V M+ ++L++W+P
Sbjct: 223 EEQNLGFSADPIDDNIYQWCVKLYTFQEDSDLARELAEICARDGYNYIELQMDFAIDLYPFYPPLVKVIRPRLQGSMMQRVTNMEMLKLSYWNP 316 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10904.1207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10904.1207.1 >prot_S-firma_F_contig10904.1207.1 ID=prot_S-firma_F_contig10904.1207.1|Name=mRNA_S-firma_F_contig10904.1207.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=97bp MAKTDQDRLGIQVEAVNDDVHKWLVQFRNFADTPLRRGMNRLLDKRGYCYback to top mRNA from alignment at S-firma_F_contig10904:4513..4803+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10904.1207.1 ID=mRNA_S-firma_F_contig10904.1207.1|Name=mRNA_S-firma_F_contig10904.1207.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=291bp|location=Sequence derived from alignment at S-firma_F_contig10904:4513..4803+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10904:4513..4803+ >mRNA_S-firma_F_contig10904.1207.1 ID=mRNA_S-firma_F_contig10904.1207.1|Name=mRNA_S-firma_F_contig10904.1207.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=582bp|location=Sequence derived from alignment at S-firma_F_contig10904:4513..4803+ (Sphaerotrichia firma ET2_F female)back to top |