mRNA_S-firma_F_contig10901.1203.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10901.1203.1
Unique NamemRNA_S-firma_F_contig10901.1203.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10901.1203.1 vs. uniprot
Match: D7FNX7_ECTSI (TatD DNase domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX7_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 1.160e-60
Identity = 131/272 (48.16%), Postives = 168/272 (61.76%), Query Frame = 1
Query:   34 IDCHAHLTDPALRP-THAVLQEAAAAGVAGVVCVSETLDDAAAVLEL--------AKAQPL-VHACVGLHPVQPGDVSLTPEEVPAMVALMETAAAAGTIVGVGEVGLDFRPRVLGAD----PEAAKAGQRAAFAMQCEAANRLGLAVNIHSRSAGHHALKVVVDAGVPPGRAVFHAFDGKAKYAVAVAEAGYLLSVPPNVVRSPGMQAWIARVPLSALCLETDSPALAAEAGAVNTPSQVAVGAMEVARIKGVPVEEVVEATSANARRLFP 807
             DCHAHLTD +L       L EA AAGV G+V VSE+LDDA  V+EL        ++ + L +H  +G+HP +  D+     +V  ++ L++  A   TIV VGEVGLDF   ++G       E AK  QR  F  Q   A  LGLAVN+HSRSAGHHA+ ++ + G+   RAV HAFDGK KYAV  A+AGY  SVPP V RSPG Q+ +  +PL +L LETDSPAL  E G  N P  +++    +A +KGVP + V E T+ANARRLFP
Sbjct:    2 FDCHAHLTDSSLAEGLQQTLLEAEAAGVTGIVAVSESLDDATPVVELCASINDDASRCRKLRLHPSIGMHP-EKADL----HKVDDVLELIDKHA--DTIVCVGEVGLDFSRHLIGESGGERAERAKEVQREVFRRQARRAKELGLAVNVHSRSAGHHAISLLQEEGIT--RAVLHAFDGKPKYAVQAAKAGYFFSVPPIVCRSPGFQSLVKALPLESLVLETDSPALGPEKGVRNVPGNLSISRDWIASLKGVPADVVAETTTANARRLFP 264          
BLAST of mRNA_S-firma_F_contig10901.1203.1 vs. uniprot
Match: A0A1Y1Z1A8_9FUNG (Deoxyribonuclease tatdn3 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z1A8_9FUNG)

HSP 1 Score: 192 bits (488), Expect = 7.980e-57
Identity = 121/273 (44.32%), Postives = 157/273 (57.51%), Query Frame = 1
Query:   34 IDCHAHLTDPALRPTHAV---LQEAAAAGVAGVVCVSETLDDAAAVLELAKAQPLVHACVGLHPVQPGDV----SLTPEEVPAMVALMETAAAAGTIVGVGEVGLDFRPRVLGAD------PEAAKAGQRAAFAMQCEAANRLGLAVNIHSRSAGHHALKVVVDAGVPPGRAVFHAFDGKAKYAVAVAEAGYLLSVPPNVVRSPGMQAWIARVPLSALCLETDSPALAAEAGAVNTPSQVAVGAMEVARIKGVPVEEVVEATSANARRLFPGV 813
             DCHAH+  P+  P  A+   LQEA  AGV G++ V E L D   +  LA   P++  C GLHPVQ G      S+  EEV  MV  +        I  +GE+GLDF P VL ++       E  K  QR  F+ Q   A  L LAVN+HSRSAGHHA+ ++ +  +    AV HA+DGKA  A    + GY  S+PP+++RSP  Q  +A VPLS L LETDSPAL  E G  N PS + + A E+ARIK + V+EV+  TS NA +LFP +
Sbjct:    2 FDCHAHIY-PSQFPGRAITDILQEAKLAGVKGILSVPEKLSDVEEIQALALLNPIIKPCAGLHPVQVGAEGKVRSVLEEEVGPMVTKIRELNGRQKICAIGEIGLDFSPHVLASELNPRISAEELKEQQRRVFSAQLVVAKELSLAVNVHSRSAGHHAISLLEEHKIE--LAVLHAYDGKASSAKRGVDLGYYFSIPPSIIRSPQKQKLVAAVPLSNLLLETDSPALGPEKGVDNVPSNLIISAQEIARIKDISVDEVIRVTSENALKLFPSL 271          
BLAST of mRNA_S-firma_F_contig10901.1203.1 vs. uniprot
Match: A0A383WPV6_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WPV6_TETOB)

HSP 1 Score: 189 bits (480), Expect = 2.830e-55
Identity = 123/278 (44.24%), Postives = 161/278 (57.91%), Query Frame = 1
Query:   34 IDCHAHLTDPALRPTHAVLQEAAA--AGVAGVVCVSETLDDAAAVLELAKAQPLVHACVGLHPVQP--------------GDVSLTPEEVPAMVALMETAAAAGTIVGVGEVGLDFRPRVLGA----DPEAAKAGQRAAFAMQCEAANRLGLAVNIHSRSAGHHALKVVVDAGVPPGRAVFHAFDGKAKYAVAVAEAGYLLSVPPNVVRSPGMQAWIARVPLSALCLETDSPALAAEAGAVNTPSQVAVGAMEVARIKGVPVEEVVEATSANARRLFP 807
            IDCH+H   P           AAA  AGV  +V V E+L D  AVL+LA+ +P+V AC GLHPVQP               DVS    EV  ++A +   A+   +V VGEVGLDF P V+G     + +  +  QR  F  Q + AN LGL VN+HSRSAGH+A+  +++     G A+ HAFDGK  +A+  A AG+  SVPP++VRSP  Q  +  +PL  L LETD+PAL  + G+VN P+ + V   EVA+IKGV  EEV   T+ NA  LFP
Sbjct:    3 IDCHSHFYTPQFSRADIPGLAAAARHAGVQAIVTVPESLQDCEAVLQLAREEPIVQACAGLHPVQPIHADGQFYSSCRSVQDVS----EVSPVLAFIRKHAS--ELVAVGEVGLDFSPHVVGKVHSEEEQRLRDVQREVFKQQIQLANELGLPVNVHSRSAGHYAIDTLIECNA--GGALLHAFDGKLGHALRGAAAGFYFSVPPSIVRSPQKQKLVKGLPLDRLVLETDAPALGPDKGSVNVPANITVSCAEVAKIKGVSAEEVAAVTTNNALTLFP 272          
BLAST of mRNA_S-firma_F_contig10901.1203.1 vs. uniprot
Match: A0A6H5KIS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS3_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.640e-54
Identity = 133/300 (44.33%), Postives = 168/300 (56.00%), Query Frame = 1
Query:   34 IDCHAHLTDPALRP-THAVLQEAAAAGVAGVVCVSETLDDAAAVLEL--------AKAQPL-VHACVGLHPVQPGDVSLTPEEVPAMVALMETAAAAGTIVGVGEVGLDFRPRVLGAD----PEAAKAGQRAAFAMQCEAANRLGLAVNIHSRSAGHHALKVVVDAGVPPGRAVFHAFDGKAK----------------------------YAVAVAEAGYLLSVPPNVVRSPGMQAWIARVPLSALCLETDSPALAAEAGAVNTPSQVAVGAMEVARIKGVPVEEVVEATSANARRLFP 807
             DCHAHLTD +L    H  L EA AAGV G+V VSE+LDDA  V+EL        ++ + L +H  +G+HP +  DV     +V  ++ L++  A   TIV VGEVGLDF   ++G       E AK  QR  F  Q   A  LGLAVN+HSRSAGHHA+ ++ + G+   RAV HAFDGK K                            YAV  A+AGY  SVPP V RS G Q+ +  +PL +L LETDSPAL  E G  N P  ++V    +A +KGVP + V E T+ANARRLFP
Sbjct:   47 FDCHAHLTDSSLAEGLHQTLLEAEAAGVTGIVAVSESLDDATPVVELCASINDDASRCRKLRLHPSIGMHP-EKADV----HKVDDVLELIDKHA--DTIVCVGEVGLDFSRHLIGESGGERAERAKEVQREVFRRQARRAKELGLAVNVHSRSAGHHAISLLQEEGIT--RAVLHAFDGKPKDNGLITAEIQQTFRVQEYLATAGGEKERYAVQAAKAGYFFSVPPIVCRSSGFQSLVKALPLESLVLETDSPALGPEKGVGNVPGNLSVSRDWIASLKGVPADVVAETTTANARRLFP 337          
BLAST of mRNA_S-firma_F_contig10901.1203.1 vs. uniprot
Match: A0A2V0PG66_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PG66_9CHLO)

HSP 1 Score: 186 bits (472), Expect = 5.000e-54
Identity = 131/295 (44.41%), Postives = 163/295 (55.25%), Query Frame = 1
Query:   10 APPPPQGPI-DCHAHLTDPALRPTH--AVLQEAAAAGVAGVVCVSETLDDAAAVLELAKAQPLVHACVGLHPVQPGDVSLTP------------------------EEVPAMVALMETAAAAGTIVGVGEVGLDFRPRVLGADPEAAKAGQRAAFAMQCEAANRLGLAVNIHSRSAGHHALKVVVDAGVPPGRAVFHAFDGKAKYAVAVAEAG--YLLSVPPNVVRSPGMQAWIARVPLSALCLETDSPALAAEAGAVNTPSQVAVGAMEVARIKGVPVEEVVEATSANARRLFP 807
            A P P GPI DCH HL  P    +    +L EA AAGV  +V V ETL DA AVL LA   PL     GLHPVQP     TP                        E  PA+  +    A A  +V VGEVGLDF P VL  D E+ +  QRAAF+ Q   A+ LGL +N+HSRSAGHHA++++++  V  G  + HAFDG+A +A+   +    +  SV P+V RSP  Q  +A +PL  L LETD+PAL    G  N P+ +A+   E+ARIKGV V E   ATS NA RLFP
Sbjct:    2 ASPLPGGPIFDCHCHLYAPQFEASSIPGLLAEARAAGVGAIVTVPETLADARAVLALASTNPLTAPRAGLHPVQPAAAPHTPGAGAEGGGLXXXXXXGGVRSVRFDEVAPALDFIR---AHAHELVAVGEVGLDFSPHVLAGD-ESQRDAQRAAFSAQIALASELGLPLNVHSRSAGHHAIELLLEHQVQQG-VLLHAFDGRAAHALRAVDRSPAFFFSVAPSVARSPQQQKLVAALPLDRLVLETDAPALGPVKGEPNRPANIAIALSELARIKGVAVSEAARATSENALRLFP 291          
BLAST of mRNA_S-firma_F_contig10901.1203.1 vs. uniprot
Match: A0A507E947_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E947_9FUNG)

HSP 1 Score: 184 bits (468), Expect = 1.340e-53
Identity = 112/263 (42.59%), Postives = 159/263 (60.46%), Query Frame = 1
Query:   34 IDCHAHLTDPALRPTHAVLQEAAAAGVAGVVCVSETLDDAAAVLELAKAQPLVHACVGLHPVQPG---DVSLTPEEVPAMVALMETAAAAGTIVGVGEVGLDFRPRVL-GAD--PEAAKAGQRAAFAMQCEAANRLGLAVNIHSRSAGHHALKVVVDAGVPPGRAVFHAFDGKAKYAVAVAEAGYLLSVPPNVVRSPGMQAWIARVPLSALCLETDSPALAAEAGAVNTPSQVAVGAMEVARIKGVPVEEVVEATSANARRLF 804
            +DCHAH+  P        L+ A AAGV  ++ VSET++DA  +LELA+  P++  C+GLHPVQPG     S+  +EV  ++ L+   +    IV +GE GLDF P VL G+D  P A K  Q+  F  Q   AN +G+ VN+HSR AGH+A+ ++++AG    + + HAFDGK  +A+     G L+S+ P+VVRSP +Q     +PL  L LETDSPAL    G  N P+ V +    VA+IKG+  E+V   T+ NA ++F
Sbjct:   29 LDCHAHIYSPEFSDVQQTLEAAYAAGVRAILNVSETVEDALKILELAQEYPILQPCLGLHPVQPGAQGSRSVRLDEVDKIMELIRENSE--RIVAIGECGLDFSPHVLAGSDVPPAAQKEIQKKVFGAQLCVANEIGVPVNVHSRQAGHYAVDLMIEAG---SKGLLHAFDGKVGHALKAVHNGCLISIAPSVVRSPHLQKLAKAIPLDHLVLETDSPALGPANGVQNVPANVRIACEHVAKIKGMSFEDVEAMTTENAMKMF 286          
BLAST of mRNA_S-firma_F_contig10901.1203.1 vs. uniprot
Match: A0A0L0HTJ8_SPIPD (TatD family hydrolase n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HTJ8_SPIPD)

HSP 1 Score: 180 bits (456), Expect = 4.790e-52
Identity = 115/270 (42.59%), Postives = 157/270 (58.15%), Query Frame = 1
Query:   34 IDCHAHLTDPALRPT--HAVLQEAAAAGVAGVVCVSETLDDAAAVLELAKAQPLVHACVGLHPVQPG----DVSLTPEEVPAMVALMETAAAAGTIVGVGEVGLDFRPRVLGADPE----AAKAGQRAAFAMQCEAANRLGLAVNIHSRSAGHHALKVVVDAGVPPGRAVFHAFDGKAKYAVAVAEAGYLLSVPPNVVRSPGMQAWIARVPLSALCLETDSPALAAEAGAVNTPSQVAVGAMEVARIKGVPVEEVVEATSANARRLFPGV 813
            IDCHAHL  P       H+VLQ A  AGV  ++ V ETL+DA  VLELA    ++  CVGLHPVQP       S+  +EV  ++ L++  +    IV +GE GLDF P V    P     A +  Q+  FA Q   A  L + +N+HSR AGH+A+ ++V+AGV     + HAFDGK   A+   + G +LSV  ++ R+P +Q  +  +PL AL LETD+PALA E G  N P+ + +    +A IK V V+ V E T+ NARRLFP +
Sbjct:    3 IDCHAHLYPPQFPSDTLHSVLQRAETAGVTSIINVPETLEDAKIVLELAATHKILQPCVGLHPVQPSANGNPRSVRADEVQPVLDLIQRYS--DRIVAIGECGLDFSPHVFRTIPSGDIPAQRDAQKQVFAAQIRLAKELNIPLNVHSRQAGHYAVDMMVEAGVT---GLLHAFDGKVGSALKAVQNGCMLSVAAHIGRNPHLQKLVKALPLDALVLETDAPALAPEPGMQNVPANITIACETLANIKEVTVDMVQEVTTYNARRLFPRI 267          
BLAST of mRNA_S-firma_F_contig10901.1203.1 vs. uniprot
Match: A0A4P9W3M4_9FUNG (Uncharacterized protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W3M4_9FUNG)

HSP 1 Score: 179 bits (455), Expect = 5.870e-52
Identity = 117/266 (43.98%), Postives = 154/266 (57.89%), Query Frame = 1
Query:   34 IDCHAHLTDPALRPTH--AVLQEAAAAGVAGVVCVSETLDDAAAVLELAKAQPLVHACVGLHPVQPGDVSLTPEEVPAMVALMETAAAAGTIVGVGEVGLDFRPRVLGADPEAAKAGQR----AAFAMQCEAANRLGLAVNIHSRSAGHHALKVVVDAGVPPGRAVFHAFDGKAKYAVAVAEAGYLLSVPPNVVRSPGMQAWIARVPLSALCLETDSPALAAEAGAVNTPSQVAVGAMEVARIKGVPVEEVVEATSANARRLFPGV 813
            +D HAH+  P    +   A+L  A   GV  +V V E+L D   V  L+   P++    GLHPVQ G  S+  EEV  ++  +        IV VGE GLD+ P V  A PE ++A QR    A F  Q   A  L L VN+HSRSAGHHA+  ++    P   AV HAFDG+A +AV  A++G  LSVP ++VR P ++ W+A VPL +L LETDSPAL AE G  + P+ V + A E+A IKGV  + V   T  NAR+LFPG+
Sbjct:    3 VDVHAHVYPPNFPDSSLPALLATARDRGVVAIVNVPESLRDCETVFALSHRFPMLRPAAGLHPVQ-GGRSVVKEEVGPVLEFVRQHV--DEIVAVGECGLDYSPHVFRATPEVSEADQREEQLAVFRAQLSLAAELNLPVNVHSRSAGHHAITEILS--YPNLPAVLHAFDGRAAHAVRAAQSGLHLSVPSSIVRDPTIRKWVAAVPLDSLLLETDSPALPAERGGASQPADVDIAAREIAAIKGVGFDIVAAITGENARKLFPGI 263          
BLAST of mRNA_S-firma_F_contig10901.1203.1 vs. uniprot
Match: A0A7K6BGV2_UPUEP (YNF8 Deoxyribonuclease (Fragment) n=1 Tax=Upupa epops TaxID=57439 RepID=A0A7K6BGV2_UPUEP)

HSP 1 Score: 179 bits (453), Expect = 1.200e-51
Identity = 111/266 (41.73%), Postives = 159/266 (59.77%), Query Frame = 1
Query:   28 GPIDCHAHLTDPALRP-THAVLQEAAAAGVAGVVCVSETLDDAAAVLELAKAQP-LVHACVGLHPVQPGDV----SLTPEEVPAMVALMETAAAAGTIVGVGEVGLDFRPRVLGADPEAAKAGQRAAFAMQCEAANRLGLAVNIHSRSAGHHALKVVVDAGVPPGRAVFHAFDGKAKYAVAVAEAGYLLSVPPNVVRSPGMQAWIARVPLSALCLETDSPALAAEAGAVNTPSQVAVGAMEVARIKGVPVEEVVEATSANARRLFP 807
            G +DCH HL  P  +P   AV+Q A  A V+G+V VSE   +  +VLEL++  P  V  C+G+HPVQ G      S+T +++ A + L+E       +VG+GEVGLDF PR    D +  K  QR     Q E A RL L +N+HSRSAG   + ++ + G    + + HAFDGK   A+   +AGY  S+PP+++RS   Q  +  +PL ++CLE+DSPAL  E    N P  + + A  +A+IKG+PV+EVVE T+ NA ++FP
Sbjct:    2 GLVDCHCHLAAPCFQPDVAAVVQAAEQAAVSGLVVVSEQAAEFGSVLELSERFPRFVWPCLGVHPVQEGSPEGQRSVTVQDLDAALPLIERYK--DKLVGIGEVGLDFTPRFASTDEQ--KEEQRQVLIKQIEIARRLDLPLNVHSRSAGRPTINLLKEQGAT--KVLLHAFDGKPSVAMEGVKAGYYFSIPPSIIRSQQKQKLVKLLPLESMCLESDSPALGPEKQVRNEPKNIYIAAEYIAKIKGIPVQEVVEVTTRNALKVFP 261          
BLAST of mRNA_S-firma_F_contig10901.1203.1 vs. uniprot
Match: A0A7K4YI79_BUCAB (YNF8 Deoxyribonuclease (Fragment) n=11 Tax=Neognathae TaxID=8825 RepID=A0A7K4YI79_BUCAB)

HSP 1 Score: 177 bits (449), Expect = 4.930e-51
Identity = 111/266 (41.73%), Postives = 160/266 (60.15%), Query Frame = 1
Query:   28 GPIDCHAHLTDPALRP-THAVLQEAAAAGVAGVVCVSETLDDAAAVLELAKAQP-LVHACVGLHPVQ---PGDV-SLTPEEVPAMVALMETAAAAGTIVGVGEVGLDFRPRVLGADPEAAKAGQRAAFAMQCEAANRLGLAVNIHSRSAGHHALKVVVDAGVPPGRAVFHAFDGKAKYAVAVAEAGYLLSVPPNVVRSPGMQAWIARVPLSALCLETDSPALAAEAGAVNTPSQVAVGAMEVARIKGVPVEEVVEATSANARRLFP 807
            GP+DCH HLT P  +    AV++ A  A V+ +V VSE   +  +VL L++  P  V  C+G+HPVQ   P +  S+T +++ A + L+E       +VG+GEVGLDF PR    D +  K GQR     Q E A RL L +N+HSRSAG   + ++ + G    + + HAFDGK   A+   +AGY  S+PP+++RS   Q  +  +PL ++CLETDSPAL  E    N P  + + A  +A+IKG+PVEEV+E T+ NA ++FP
Sbjct:    3 GPVDCHCHLTAPCFQTDVAAVVRAAEQAAVSALVVVSEQAGEFRSVLALSERFPGFVLPCLGVHPVQEVSPEEQRSVTVKDLDAALPLIELYK--DKLVGIGEVGLDFTPRFASTDEQ--KEGQRQVLIKQIELARRLDLPLNVHSRSAGRPTINLLKEQGA--SKVLLHAFDGKPSVAMEGVKAGYFFSIPPSIIRSEQKQKLVKLLPLESMCLETDSPALGPEKQVRNEPKNIYIAAEYIAKIKGIPVEEVIEVTTQNALKVFP 262          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10901.1203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNX7_ECTSI1.160e-6048.16TatD DNase domain containing 3 n=1 Tax=Ectocarpus ... [more]
A0A1Y1Z1A8_9FUNG7.980e-5744.32Deoxyribonuclease tatdn3 n=1 Tax=Basidiobolus meri... [more]
A0A383WPV6_TETOB2.830e-5544.24Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A6H5KIS3_9PHAE1.640e-5444.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V0PG66_9CHLO5.000e-5444.41Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A507E947_9FUNG1.340e-5342.59Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A0L0HTJ8_SPIPD4.790e-5242.59TatD family hydrolase n=2 Tax=Spizellomyces TaxID=... [more]
A0A4P9W3M4_9FUNG5.870e-5243.98Uncharacterized protein n=1 Tax=Blyttiomyces helic... [more]
A0A7K6BGV2_UPUEP1.200e-5141.73YNF8 Deoxyribonuclease (Fragment) n=1 Tax=Upupa ep... [more]
A0A7K4YI79_BUCAB4.930e-5141.73YNF8 Deoxyribonuclease (Fragment) n=11 Tax=Neognat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10901contigS-firma_F_contig10901:204..1019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FNX7
Preferred nameTATDN3
PFAMsTatD_DNase
Max annot lvl2759|Eukaryota
KEGG koko:K03424
Evalue1.9e-61
EggNOG OGsCOG0084@1|root,KOG3020@2759|Eukaryota
Descriptionhydrolase activity, acting on ester bonds
COG categoryL
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size816
Cds size816
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.7606027-CDS-S-firma_F_contig10901:203..10191622815634.7606027-CDS-S-firma_F_contig10901:203..1019Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10901 204..1019 +
1696949468.8918278-CDS-S-firma_F_contig10901:203..10191696949468.8918278-CDS-S-firma_F_contig10901:203..1019Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10901 204..1019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10901.1203.1prot_S-firma_F_contig10901.1203.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10901 204..1019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10901.1203.1

>prot_S-firma_F_contig10901.1203.1 ID=prot_S-firma_F_contig10901.1203.1|Name=mRNA_S-firma_F_contig10901.1203.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=272bp
MADAPPPPQGPIDCHAHLTDPALRPTHAVLQEAAAAGVAGVVCVSETLDD
AAAVLELAKAQPLVHACVGLHPVQPGDVSLTPEEVPAMVALMETAAAAGT
IVGVGEVGLDFRPRVLGADPEAAKAGQRAAFAMQCEAANRLGLAVNIHSR
SAGHHALKVVVDAGVPPGRAVFHAFDGKAKYAVAVAEAGYLLSVPPNVVR
SPGMQAWIARVPLSALCLETDSPALAAEAGAVNTPSQVAVGAMEVARIKG
VPVEEVVEATSANARRLFPGV*
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mRNA from alignment at S-firma_F_contig10901:204..1019+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10901.1203.1 ID=mRNA_S-firma_F_contig10901.1203.1|Name=mRNA_S-firma_F_contig10901.1203.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=816bp|location=Sequence derived from alignment at S-firma_F_contig10901:204..1019+ (Sphaerotrichia firma ET2_F female)
ATGGCCGACGCGCCACCCCCTCCACAAGGGCCCATTGACTGCCACGCGCA CCTCACCGACCCCGCCCTCCGCCCCACCCATGCCGTTCTGCAGGAGGCGG CCGCTGCGGGCGTCGCTGGGGTCGTGTGTGTGAGTGAGACCTTGGATGAC GCCGCCGCAGTGTTGGAGCTGGCCAAGGCGCAGCCGCTGGTGCACGCCTG CGTTGGCCTGCACCCGGTGCAGCCCGGGGACGTGTCACTGACGCCGGAGG AGGTGCCGGCGATGGTAGCACTCATGGAGACCGCGGCGGCGGCTGGCACC ATCGTGGGCGTCGGCGAAGTGGGCCTCGATTTCCGACCCCGGGTGTTGGG GGCTGACCCTGAGGCGGCCAAGGCCGGCCAGCGGGCGGCGTTTGCCATGC AGTGCGAGGCCGCCAACCGGCTGGGGCTGGCCGTCAACATTCACAGCCGG TCCGCGGGGCACCACGCGCTGAAGGTTGTGGTTGACGCCGGCGTCCCCCC CGGGCGGGCGGTGTTCCACGCGTTTGACGGCAAGGCAAAGTACGCGGTGG CGGTGGCGGAGGCGGGGTACCTGTTGTCGGTTCCGCCGAACGTGGTGCGC AGCCCGGGGATGCAGGCCTGGATTGCCCGCGTGCCGCTGTCGGCGCTGTG CTTGGAGACGGACAGCCCGGCGCTGGCGGCGGAGGCAGGCGCCGTCAACA CGCCGTCCCAGGTGGCTGTGGGCGCGATGGAGGTGGCAAGAATAAAGGGA GTGCCAGTGGAGGAGGTGGTGGAGGCAACGTCAGCCAACGCGCGGCGCCT GTTTCCAGGGGTGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10901:204..1019+

>mRNA_S-firma_F_contig10901.1203.1 ID=mRNA_S-firma_F_contig10901.1203.1|Name=mRNA_S-firma_F_contig10901.1203.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1632bp|location=Sequence derived from alignment at S-firma_F_contig10901:204..1019+ (Sphaerotrichia firma ET2_F female)
ATGGCCGACGCGCCACCCCCTCCACAAGGGCCCATTGACTGCCACGCGCA
CCTCACCGACCCCGCCCTCCGCCCCACCCATGCCGTTCTGCAGGAGGCGG
CCGCTGCGGGCGTCGCTGGGGTCGTGTGTGTGAGTGAGACCTTGGATGAC
GCCGCCGCAGTGTTGGAGCTGGCCAAGGCGCAGCCGCTGGTGCACGCCTG
CGTTGGCCTGCACCCGGTGCAGCCCGGGGACGTGTCACTGACGCCGGAGG
AGGTGCCGGCGATGGTAGCACTCATGGAGACCGCGGCGGCGGCTGGCACC
ATCGTGGGCGTCGGCGAAGTGGGCCTCGATTTCCGACCCCGGGTGTTGGG
GGCTGACCCTGAGGCGGCCAAGGCCGGCCAGCGGGCGGCGTTTGCCATGC
AGTGCGAGGCCGCCAACCGGCTGGGGCTGGCCGTCAACATTCACAGCCGG
TCCGCGGGGCACCACGCGCTGAAGGTTGTGGTTGACGCCGGCGTCCCCCC
CGGGCGGGCGGTGTTCCACGCGTTTGACGGCAAGGCAAAGTACGCGGTGG
CGGTGGCGGAGGCGGGGTACCTGTTGTCGGTTCCGCCGAACGTGGTGCGC
AGCCCGGGGATGCAGGCCTGGATTGCCCGCGTGCCGCTGTCGGCGCTGTG
CTTGGAGACGGACAGCCCGGCGCTGGCGGCGGAGGCAGGCGCCGTCAACA
CGCCGTCCCAGGTGGCTGTGGGCGCGATGGAGGTGGCAAGAATAAAGGGA
GTGCCAGTGGAGGAGGTGGTGGAGGCAACGTCAGCCAACGCGCGGCGCCT
GTTTCCAGGGGTGTAGATGGCCGACGCGCCACCCCCTCCACAAGGGCCCA
TTGACTGCCACGCGCACCTCACCGACCCCGCCCTCCGCCCCACCCATGCC
GTTCTGCAGGAGGCGGCCGCTGCGGGCGTCGCTGGGGTCGTGTGTGTGAG
TGAGACCTTGGATGACGCCGCCGCAGTGTTGGAGCTGGCCAAGGCGCAGC
CGCTGGTGCACGCCTGCGTTGGCCTGCACCCGGTGCAGCCCGGGGACGTG
TCACTGACGCCGGAGGAGGTGCCGGCGATGGTAGCACTCATGGAGACCGC
GGCGGCGGCTGGCACCATCGTGGGCGTCGGCGAAGTGGGCCTCGATTTCC
GACCCCGGGTGTTGGGGGCTGACCCTGAGGCGGCCAAGGCCGGCCAGCGG
GCGGCGTTTGCCATGCAGTGCGAGGCCGCCAACCGGCTGGGGCTGGCCGT
CAACATTCACAGCCGGTCCGCGGGGCACCACGCGCTGAAGGTTGTGGTTG
ACGCCGGCGTCCCCCCCGGGCGGGCGGTGTTCCACGCGTTTGACGGCAAG
GCAAAGTACGCGGTGGCGGTGGCGGAGGCGGGGTACCTGTTGTCGGTTCC
GCCGAACGTGGTGCGCAGCCCGGGGATGCAGGCCTGGATTGCCCGCGTGC
CGCTGTCGGCGCTGTGCTTGGAGACGGACAGCCCGGCGCTGGCGGCGGAG
GCAGGCGCCGTCAACACGCCGTCCCAGGTGGCTGTGGGCGCGATGGAGGT
GGCAAGAATAAAGGGAGTGCCAGTGGAGGAGGTGGTGGAGGCAACGTCAG
CCAACGCGCGGCGCCTGTTTCCAGGGGTGTAG
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