mRNA_S-firma_F_contig10900.1202.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10900.1202.1
Unique NamemRNA_S-firma_F_contig10900.1202.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10900.1202.1 vs. uniprot
Match: D8LNC5_ECTSI (Nuclear nucleic acid-binding protein C1D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC5_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 3.910e-48
Identity = 84/103 (81.55%), Postives = 93/103 (90.29%), Query Frame = 2 
Query:    2 VAYGVSSLFYMFLKTQGVSPADHPVKAELDRIRKYFGRLKQVGKPPKKRSTKVDVDASRRFINAALAGDSVWQNAKGTDPASARQRRAEAGIGRSGPAGAPEN 310
            VAYGVSSLFYMFLKTQGVSP+ HPVK ELDRIR YFGRLK VGKPP++R+ KVD DASRRFINAAL+GDSVWQNAKGTDP SA+Q+RA AGIGR+ PAG PE+
Sbjct:   55 VAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPEQRTLKVDQDASRRFINAALSGDSVWQNAKGTDPKSAQQKRASAGIGRANPAGQPED 157
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BLAST of mRNA_S-firma_F_contig10900.1202.1 vs. uniprot
Match: UPI0009E49D50 (nuclear nucleic acid-binding protein C1D-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E49D50)

HSP 1 Score: 76.3 bits (186), Expect = 1.770e-13
Identity = 35/74 (47.30%), Postives = 58/74 (78.38%), Query Frame = 2 
Query:    2 VAYGVSSLFYMFLKTQGVSPADHPVKAELDRIRKYFGRLKQVGKPPKKRSTKVDVDASRRFINAAL---AGDSV 214
            VAY ++S+F+M+L TQGV+P  HPVK+ELDRI+KY G++K+  +  K+ S ++D +A++RF+ +AL   +GD++
Sbjct:   70 VAYAINSMFWMYLTTQGVNPRQHPVKSELDRIKKYMGKVKEATEK-KEASARIDKEAAKRFVKSALWEPSGDAM 142
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BLAST of mRNA_S-firma_F_contig10900.1202.1 vs. uniprot
Match: UPI000F550AF0 (nuclear nucleic acid-binding protein C1D-like isoform X2 n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F550AF0)

HSP 1 Score: 74.7 bits (182), Expect = 2.990e-13
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 2 
Query:    2 VAYGVSSLFYMFLKTQGVSPADHPVKAELDRIRKYFGRLKQVGKPPKKRSTKVDVDASRRFINAALAGDSVWQ 220
            VAY ++S+F+M+L TQGV+P  HPVK+ELDRI+KY G++K+  +  K+ S ++D  A++RF+ +AL     WQ
Sbjct:   62 VAYAINSMFWMYLTTQGVNPRQHPVKSELDRIKKYMGKVKEATEK-KEASLRIDKGAAKRFVKSAL-----WQ 128
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BLAST of mRNA_S-firma_F_contig10900.1202.1 vs. uniprot
Match: UPI001F04DAC0 (nuclear nucleic acid-binding protein C1D-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04DAC0)

HSP 1 Score: 73.9 bits (180), Expect = 5.330e-13
Identity = 39/89 (43.82%), Postives = 61/89 (68.54%), Query Frame = 2 
Query:    2 VAYGVSSLFYMFLKTQGVSPADHPVKAELDRIRKYFGRLKQVGKPPKKRSTKVDVDASRRFINAALAGDSVWQNAKGTDPASARQRRAE 268
            V YG++++F+++L TQGV+P +H VK ELDRI+ Y  ++K V +  KK S K+D DA+RRF+  ALA      N K ++  S +++RA+
Sbjct:   60 VVYGINTMFWIYLITQGVNPKEHGVKHELDRIKNYMKKVKDVSER-KKASMKIDKDAARRFVKGALA------NPKASEVVSDKEKRAK 141
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BLAST of mRNA_S-firma_F_contig10900.1202.1 vs. uniprot
Match: UPI00109B8F00 (nuclear nucleic acid-binding protein C1D n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109B8F00)

HSP 1 Score: 73.9 bits (180), Expect = 7.220e-13
Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = 2 
Query:    2 VAYGVSSLFYMFLKTQGVSPADHPVKAELDRIRKYFGRLKQVGKPPKKRSTKVDVDASRRFINAALAGDSVWQ 220
            VAY ++S+F+MFL TQG+ P +HPV+ ELDRI+KY G++K   K  K+ S ++D  A++RF+ +AL     WQ
Sbjct:   59 VAYAINSMFWMFLITQGIDPKNHPVRQELDRIKKYMGKVKDA-KEKKQASMRIDQGAAKRFVKSAL-----WQ 125
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BLAST of mRNA_S-firma_F_contig10900.1202.1 vs. uniprot
Match: A0A2B4S179_STYPI (Nuclear nucleic acid-binding protein C1D n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S179_STYPI)

HSP 1 Score: 73.9 bits (180), Expect = 7.850e-13
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 2 
Query:    2 VAYGVSSLFYMFLKTQGVSPADHPVKAELDRIRKYFGRLKQVGKPPKKRSTKVDVDASRRFINAALAGDSVWQ 220
            VAY ++S+F+M+L TQGV+P  HPVK+ELDRI+KY G++K+  +  K+ S ++D  A++RF+ +AL     WQ
Sbjct:   60 VAYSINSMFWMYLTTQGVNPRQHPVKSELDRIKKYMGKVKEATEK-KEASLRLDKGAAKRFVKSAL-----WQ 126
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BLAST of mRNA_S-firma_F_contig10900.1202.1 vs. uniprot
Match: A0A1U8CZ91_ALLSI (Nuclear nucleic acid-binding protein C1D n=2 Tax=Crocodylia TaxID=1294634 RepID=A0A1U8CZ91_ALLSI)

HSP 1 Score: 73.2 bits (178), Expect = 8.660e-13
Identity = 37/88 (42.05%), Postives = 60/88 (68.18%), Query Frame = 2 
Query:    5 AYGVSSLFYMFLKTQGVSPADHPVKAELDRIRKYFGRLKQVGKPPKKRSTKVDVDASRRFINAALAGDSVWQNAKGTDPASARQRRAE 268
            AY ++S+F+++L TQG++P DHPVK EL+RIR Y  R+K++    KK+++K+D  A+ RF+  AL     W++A   +PAS    +A+
Sbjct:   63 AYTLNSMFWVYLATQGINPKDHPVKQELERIRTYMNRVKEL--TDKKKASKLDKGAAARFVRNAL-----WESASEKEPASKISNKAK 143
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BLAST of mRNA_S-firma_F_contig10900.1202.1 vs. uniprot
Match: A0A068RI96_9FUNG (Exosome complex protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RI96_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 1.320e-12
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:    2 VAYGVSSLFYMFLKTQGVSPADHPVKAELDRIRKYFGRLKQV-GKPPKKRSTKVDVDASRRFINAALAGDSVWQNAKGT 235
            ++Y ++SLFYM+LKTQGV P +HPV  EL RIR Y  ++K+  GK PK  S +VD  A+ RFI AALA D   +   GT
Sbjct:   54 LSYTINSLFYMYLKTQGVFPQEHPVATELARIRTYIEKIKKAEGKGPKP-SMQVDKGAAARFIKAALADDQEDEENAGT 131
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BLAST of mRNA_S-firma_F_contig10900.1202.1 vs. uniprot
Match: L8HHM1_ACACA (Nuclear nucleic acid-binding protein C1D n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HHM1_ACACA)

HSP 1 Score: 72.8 bits (177), Expect = 2.040e-12
Identity = 32/66 (48.48%), Postives = 50/66 (75.76%), Query Frame = 2 
Query:    2 VAYGVSSLFYMFLKTQGVSPADHPVKAELDRIRKYFGRLKQVGKPPKKRSTKVDVDASRRFINAAL 199
            +AY +++LFY++LKTQGV PADHPVK E++R+++Y  +LKQ+ +P +  S  +D  A+ RFI  A+
Sbjct:   58 LAYALNTLFYIYLKTQGVDPADHPVKDEIERVKEYIQKLKQLTQPKETPSMVLDKQAANRFIQHAV 123
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BLAST of mRNA_S-firma_F_contig10900.1202.1 vs. uniprot
Match: A0A7K4K632_9AVES (Nuclear nucleic acid-binding protein C1D (Fragment) n=4 Tax=Tinamidae TaxID=8803 RepID=A0A7K4K632_9AVES)

HSP 1 Score: 71.6 bits (174), Expect = 2.930e-12
Identity = 34/81 (41.98%), Postives = 55/81 (67.90%), Query Frame = 2 
Query:    5 AYGVSSLFYMFLKTQGVSPADHPVKAELDRIRKYFGRLKQVGKPPKKRSTKVDVDASRRFINAALAGDSVWQNAKGTDPAS 247
            AY ++S+F+M+L TQG++P +HPVK EL+RIR Y  ++K++    KK+++K+D  A+ RF+  AL     W+   G +P S
Sbjct:   60 AYALNSMFWMYLSTQGINPKEHPVKRELERIRTYMNKVKEI--EDKKKASKLDKGAASRFVRNAL-----WEPNPGNEPTS 133
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10900.1202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC5_ECTSI3.910e-4881.55Nuclear nucleic acid-binding protein C1D n=1 Tax=E... [more]
UPI0009E49D501.770e-1347.30nuclear nucleic acid-binding protein C1D-like n=1 ... [more]
UPI000F550AF02.990e-1347.95nuclear nucleic acid-binding protein C1D-like isof... [more]
UPI001F04DAC05.330e-1343.82nuclear nucleic acid-binding protein C1D-like n=1 ... [more]
UPI00109B8F007.220e-1347.95nuclear nucleic acid-binding protein C1D n=1 Tax=E... [more]
A0A2B4S179_STYPI7.850e-1347.95Nuclear nucleic acid-binding protein C1D n=2 Tax=S... [more]
A0A1U8CZ91_ALLSI8.660e-1342.05Nuclear nucleic acid-binding protein C1D n=2 Tax=C... [more]
A0A068RI96_9FUNG1.320e-1251.90Exosome complex protein n=2 Tax=Lichtheimia TaxID=... [more]
L8HHM1_ACACA2.040e-1248.48Nuclear nucleic acid-binding protein C1D n=1 Tax=A... [more]
A0A7K4K632_9AVES2.930e-1241.98Nuclear nucleic acid-binding protein C1D (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10900contigS-firma_F_contig10900:3359..4369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size680
Cds size678
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.7191465-CDS-S-firma_F_contig10900:3358..39371622815634.7191465-CDS-S-firma_F_contig10900:3358..3937Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10900 3359..3937 -
1696949468.8721824-CDS-S-firma_F_contig10900:3358..39371696949468.8721824-CDS-S-firma_F_contig10900:3358..3937Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10900 3359..3937 -
1622815634.7297902-CDS-S-firma_F_contig10900:4270..43691622815634.7297902-CDS-S-firma_F_contig10900:4270..4369Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10900 4271..4369 -
1696949468.8806949-CDS-S-firma_F_contig10900:4270..43691696949468.8806949-CDS-S-firma_F_contig10900:4270..4369Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10900 4271..4369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10900.1202.1prot_S-firma_F_contig10900.1202.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10900 3359..4369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10900.1202.1

>prot_S-firma_F_contig10900.1202.1 ID=prot_S-firma_F_contig10900.1202.1|Name=mRNA_S-firma_F_contig10900.1202.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=226bp
GSLRRELPLLHVSEDAGRITGGPPGKGGARPYPQVLRAAQAGGQAPEEAQ
HEGGRGRQSPLHQRRARGRQRVAERQGHGPRERAAEAGRGRHRPERPGGS
ARERDLGWARRSGGGGGAAAAAAEARGGSAAAGGGGSSSKRKHEAAAGGD
DADGWVSTARGGAKEKRRSGGGGGGGGGSVASGSAAVEPQWGDRPQAAVP
GETPPAAKKAKGGKNQKKPARYHAW*
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mRNA from alignment at S-firma_F_contig10900:3359..4369-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10900.1202.1 ID=mRNA_S-firma_F_contig10900.1202.1|Name=mRNA_S-firma_F_contig10900.1202.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1011bp|location=Sequence derived from alignment at S-firma_F_contig10900:3359..4369- (Sphaerotrichia firma ET2_F female)
GGTAGCCTACGGCGTGAGCTCCCTCTTCTACATGTTTCTGAAGACGCAGG
GCGTATCACCGGCGGACCACCCGGTAAAGGCGGAGCTCGACCGTATCCGG
TGAGAACAACCAACCCGCGTAAGCACGGGGTGGAAAGAGGGAGGAGAGAG
AGAGAGAGAGAGAGAGAGAGGACGAGAGAGAGAGAGGCAGGAGCCAAAAT
GAGATGGATCCACGAACGCCCACAAGAGAAGAGGTGGCTTGTTCAAACCT
CAACATGAAAAAATCTTGCTGTGTATTTTTTAATACATGCATCCGCTCGC
CAAATTCTCTTTCGGCCGCCCGCTCTCTGCCGAAACCACCACCATCACCT
CCTGCCCCCCCCCGCCCCCTTGCGCTTCTCCCCTCCCCACGTTCCCCCTC
CCTCCCTGCTCTCCCTCCCACGCCACGCCCAGCAAGTACTTCGGGCGGCT
CAAGCAGGTGGGCAAGCCCCCGAAGAAGCGCAGCACGAAGGTGGACGTGG
ACGCCAGTCGCCGCTTCATCAACGCCGCGCTCGCGGGCGACAGCGTGTGG
CAGAACGCCAAGGGCACGGACCCCGCGAGCGCGCGGCAGAGGCGGGCCGA
GGCAGGCATCGGCCGGAGCGGCCCGGCGGGAGCGCCCGAGAACGCGACCT
CGGCTGGGCACGACGAAGCGGAGGCGGCGGCGGCGCGGCGGCGGCGGCGG
CGGAAGCACGCGGGGGATCGGCGGCGGCTGGGGGTGGGGGTAGCAGCAGC
AAGAGAAAGCACGAGGCGGCGGCCGGTGGTGACGACGCCGACGGTTGGGT
GAGTACCGCGAGGGGCGGAGCAAAGGAGAAGAGGAGAAGCGGCGGCGGCG
GCGGCGGCGGTGGCGGTTCGGTAGCTAGTGGATCAGCAGCTGTGGAGCCG
CAGTGGGGGGATAGGCCGCAGGCGGCCGTCCCCGGGGAAACCCCGCCCGC
GGCGAAGAAGGCGAAAGGGGGCAAGAACCAGAAGAAGCCCGCGCGTTACC
ACGCCTGGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10900:3359..4369-

>mRNA_S-firma_F_contig10900.1202.1 ID=mRNA_S-firma_F_contig10900.1202.1|Name=mRNA_S-firma_F_contig10900.1202.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1356bp|location=Sequence derived from alignment at S-firma_F_contig10900:3359..4369- (Sphaerotrichia firma ET2_F female)
GGTAGCCTACGGCGTGAGCTCCCTCTTCTACATGTTTCTGAAGACGCAGG
GCGTATCACCGGCGGACCACCCGGTAAAGGCGGAGCTCGACCGTATCCGG
GTAGCCTACGGCGTGAGCTCCCTCTTCTACATGTTTCTGAAGACGCAGGG
CGTATCACCGGCGGACCACCCGGTAAAGGCGGAGCTCGACCGTATCCGCA
AGTACTTCGGGCGGCTCAAGCAGGTGGGCAAGCCCCCGAAGAAGCGCAGC
ACGAAGGTGGACGTGGACGCCAGTCGCCGCTTCATCAACGCCGCGCTCGC
GGGCGACAGCGTGTGGCAGAACGCCAAGGGCACGGACCCCGCGAGCGCGC
GGCAGAGGCGGGCCGAGGCAGGCATCGGCCGGAGCGGCCCGGCGGGAGCG
CCCGAGAACGCGACCTCGGCTGGGCACGACGAAGCGGAGGCGGCGGCGGC
GCGGCGGCGGCGGCGGCGGAAGCACGCGGGGGATCGGCGGCGGCTGGGGG
TGGGGGTAGCAGCAGCAAGAGAAAGCACGAGGCGGCGGCCGGTGGTGACG
ACGCCGACGGTTGGGTGAGTACCGCGAGGGGCGGAGCAAAGGAGAAGAGG
AGAAGCGGCGGCGGCGGCGGCGGCGGTGGCGGTTCGGTAGCTAGTGGATC
AGCAGCTGTGGAGCCGCAGTGGGGGGATAGGCCGCAGGCGGCCGTCCCCG
GGGAAACCCCGCCCGCGGCGAAGAAGGCGAAAGGGGGCAAGAACCAGAAG
AAGCCCGCGCGTTACCACGCCTGGTAGCAAGTACTTCGGGCGGCTCAAGC
AGGTGGGCAAGCCCCCGAAGAAGCGCAGCACGAAGGTGGACGTGGACGCC
AGTCGCCGCTTCATCAACGCCGCGCTCGCGGGCGACAGCGTGTGGCAGAA
CGCCAAGGGCACGGACCCCGCGAGCGCGCGGCAGAGGCGGGCCGAGGCAG
GCATCGGCCGGAGCGGCCCGGCGGGAGCGCCCGAGAACGCGACCTCGGCT
GGGCACGACGAAGCGGAGGCGGCGGCGGCGCGGCGGCGGCGGCGGCGGAA
GCACGCGGGGGATCGGCGGCGGCTGGGGGTGGGGGTAGCAGCAGCAAGAG
AAAGCACGAGGCGGCGGCCGGTGGTGACGACGCCGACGGTTGGGTGAGTA
CCGCGAGGGGCGGAGCAAAGGAGAAGAGGAGAAGCGGCGGCGGCGGCGGC
GGCGGTGGCGGTTCGGTAGCTAGTGGATCAGCAGCTGTGGAGCCGCAGTG
GGGGGATAGGCCGCAGGCGGCCGTCCCCGGGGAAACCCCGCCCGCGGCGA
AGAAGGCGAAAGGGGGCAAGAACCAGAAGAAGCCCGCGCGTTACCACGCC
TGGTAG
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