mRNA_S-firma_F_contig109.1191.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig109.1191.1
Unique NamemRNA_S-firma_F_contig109.1191.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig109.1191.1 vs. uniprot
Match: D7FUU5_ECTSI (Matrin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUU5_ECTSI)

HSP 1 Score: 818 bits (2113), Expect = 8.600e-296
Identity = 434/492 (88.21%), Postives = 445/492 (90.45%), Query Frame = 2
Query:   32 MSSSLLERARGFHEDLEIYERAIIEQLENKPRTQKERVAQQHRIANLCDGSTERSLGLHDIYEDKDGSMREEVASMRGQKVMDNFYDRLKETWSYHTHHPGLPVTFGPNVEAETEVKVQFSGEELYGKFFDLHDMFVRWVNLPQCKDKQLDYSQFLQALGRFQDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLNEVLGDTDSSFEEAWEAGTLPGWTSGRAATAAAGDAGKS---AAAPRVLDLKKFHDADELRALGMDRLKEGLEALGLKCGGTLEQRADRLFSVKGKKPEDIDPKLKAKGKKGGKXXXXXVXXXXXXXXXXXXXXXXXXXXX--KEERRKQLAALETKVKALLEVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEEEDXXXXXEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQ 1492
            MSSSLLERARGFHEDLEIYER II+QLE KPRTQKERVAQQHRIANLCDGSTERS GLH+IYED DGSMREEVASMRGQKVMD FYDRLKETWSYHTHHPGLPVTFGPN+EAETEVKVQFSGEELYGKFFDLH MFVRWVNLPQCKDKQLDYSQFLQALGRF+DIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDL+EVLGDTDSSFEEAWEAGTLPGWTSGRAA             AAAPRVLDLKKFHDADELRALGMDRLKE L+A+GLKCGGTLEQRADRLFSVKGKKPE+ID KLKAKGKK   XXXXX               XXXXXXX  KEERRKQLAALETKVKALLEVQTDTL++TKRQVDKK TRTVEERDQEIQEEEQGALPEFNE   XXX  EGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDI+LIQ
Sbjct:    1 MSSSLLERARGFHEDLEIYERGIIDQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGWTSGRAAXXXXXXXXXXXXXAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKGKKEXXXXXXXXAPGHGADPNANGPAXXXXXXXXXKEERRKQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQ 492          
BLAST of mRNA_S-firma_F_contig109.1191.1 vs. uniprot
Match: A0A836CE40_9STRA (Matrin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE40_9STRA)

HSP 1 Score: 553 bits (1426), Expect = 2.300e-191
Identity = 289/496 (58.27%), Postives = 348/496 (70.16%), Query Frame = 2
Query:   41 SLLERARGFHEDLEIYERAIIEQLENKPRTQKERVAQQHRIANLCDGSTERSLGLHDIYEDKDGSMREEVASMRGQKVMDNFYDRLKETWSYHTHHPGLPVTFGPNVEAETEVKVQFSGEELYGKFFDLHDMFVRWVNLPQCKDKQLDYSQFLQALGRFQDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLNEVLGDTDSSFEEAWEAGTLPGW--TSGRAATAAAGDAGKSAAAPRVLDLKKFHDADELRALGMDRLKEGLEALGLKCGGTLEQRADRLFSVKGKKPEDIDPKLKAKG---KKGGKXXXXXVXXXXXXXXXXXXXXXXXXXXXKE-------ERRKQLAALETKVKALLEVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEEEDXXXXXEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQ 1492
            SLLERAR FHED+E YE AII++LE KP+T KERV QQHR+ANL   +  RS  L  IYEDKD SM++EVA+MRG+  + NFYDR K +WSYH  +P LPV  GPN++ E E KV FSGEEL+GK FDLHD++ RWVN PQC DK+LDY  +L  L    D+PE+ K R K YAG++ADL  YL GFL RTQPLVD +E++ + ++ F++AWEAG + GW   S  A   AA   G   A  R LDL  +H A++L  LG+DRLKE LEALGLKCGGTL+QRA+RL +VKGKKP +IDPKL AKG   K+ G                                     + R+  AA E +V+A LE  +D  +AT++QV+KKQTRTVEERD EI +EE G LPE  + ++     +GPIYNPLNLPLGWDGKPIP+WLYKLHGLGVE+KCEICGDFSY GRR FDRHFQE+RHAHGMRCLGIPNTKHFHDI LIQ
Sbjct:    2 SLLERARAFHEDIETYEMAIIKELEAKPKTNKERVYQQHRVANLLSQAVARSKELDAIYEDKDDSMKQEVAAMRGRDALKNFYDRAKSSWSYHARYPDLPVNTGPNIDEEKEPKVTFSGEELFGKHFDLHDLYARWVNSPQCSDKRLDYGAYLAGLAALGDVPERAK-RSKGYAGYVADLEAYLRGFLARTQPLVDADEIVKEAEAEFDKAWEAGRVKGWPRVSKAAPHKAAAPGGGLTA--RHLDLSLYHAAEDLMPLGLDRLKEALEALGLKCGGTLQQRAERLMAVKGKKPSEIDPKLLAKGAGQKRNGPPSDGPAAKRQNGNGADAADASGAKTNGVPNGKSDGGDWRRSTAAAEARVRAFLEALSDVWEATRKQVEKKQTRTVEERDAEIADEEAGTLPEVGDADEEDSDDDGPIYNPLNLPLGWDGKPIPFWLYKLHGLGVEYKCEICGDFSYWGRRAFDRHFQEFRHAHGMRCLGIPNTKHFHDITLIQ 494          
BLAST of mRNA_S-firma_F_contig109.1191.1 vs. uniprot
Match: A0A7S2W3N3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3N3_9STRA)

HSP 1 Score: 418 bits (1074), Expect = 1.820e-138
Identity = 238/497 (47.89%), Postives = 313/497 (62.98%), Query Frame = 2
Query:   32 MSSSLLERARGFHEDLEIYERAIIEQLENKPRTQKERVAQQHRIANLCDGSTERSLGLHDIYEDKDGSMREEVASMRGQKVMDNFYDRLKETWSYHTHHPGLPVTFGPNVEAETEVKVQFSGEELYGKFFDLHDMFVRWVNLPQCKDKQLDYSQFLQALGRFQDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLNEVLGDTDSSFEEAWEAGTLPGWTSGRAATAAAGDAGKSAAAPRVLDLKKFHDADELRALGMDRLKEGLEALGLKCGGTLEQRADRLFSVKGKKPEDIDPKLKAKGKKGGKXXXXXVXXXXXXXXXXXXXXXXXXXXXKEERRKQLAALETKVKALLEVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPE----------FNEEEDXXXXXEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQ 1492
            MSS+LLE+AR   E  E YE+AI EQL +KP+T K++V QQH IANL     ++S    ++ +D DGS +EE+ +M+G     +FY+ LK+T  Y+   P +      ++EA+ E    FSGEE++GK+ DLH +  R  N+ Q    +  Y  +L A   F  +P   K+ G AYA +L DL +YL  F  R QPLVD   +  +  ++F+EAWE GT+PGW++G A T AA  +  + AA R +D+   H A +L ALG+ RLKEGLEALG+KCGG+L  RA+RLFSVKG   +DI   L AK  K  K                             +  + +A  E  V  ++E   D ++ATKR V+K+QT+ VEER  E++EEE G + +           ++EEDXXXX +GP+YNPLNLPLGWDGKPIP+WLYKLHGLGVE+KCEICG+ SY GRR FDRHFQEWRHAHGMRCLGIPNTKHFHDI LI+
Sbjct:    1 MSSTLLEQARQALEYSEAYEKAIGEQLSSKPKTTKQQVWQQHHIANLMTCIKKQSGTALEVVKDGDGSFKEELETMKGANAFGSFYESLKQTREYYMRFPNIKPQQALSLEADMECTTVFSGEEVFGKYLDLHALHERSCNMKQFGPTE--YLDYLAAFSDFSKVPSGAKM-GAAYAEYLKDLLDYLESFFQRAQPLVDFASISSERSTAFQEAWEKGTVPGWSAGSAGTEAASTS--NTAAKRPVDMSSMHSAQDLEALGLQRLKEGLEALGMKCGGSLSDRAERLFSVKGVAQKDIPKNLLAKAAKKRKRDAAETGG---------------------DNGRAVAEREFGVGFMVEQLLDVVEATKRHVEKRQTQLVEERAAELEEEEFGTMADQIAGEDGTGGLDDEEDXXXXDDGPLYNPLNLPLGWDGKPIPFWLYKLHGLGVEYKCEICGNQSYWGRRAFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIE 471          
BLAST of mRNA_S-firma_F_contig109.1191.1 vs. uniprot
Match: A0A4D9DC70_9STRA (Matrin-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC70_9STRA)

HSP 1 Score: 416 bits (1069), Expect = 2.430e-137
Identity = 250/508 (49.21%), Postives = 317/508 (62.40%), Query Frame = 2
Query:   32 MSSSLLERARGFHEDLEIYERAIIEQLENKPRTQKERVAQQHRIANLCDGSTERSLGLHDIYEDKDGSMREEVASMRGQKVMDNFYDRLKETWSYHTHHPGLPVTFGPNVEAETEVKVQFSGEELYGKFFDLHDMFVRWVNLPQCKDKQLDYSQFLQALGRFQDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLNEVL-GDTD-----------SSFEEAWEAGTLPGWTSGRAATAAAGDAGKSAAAPRVLDLKKFHDADELRALGMDRLKEGLEALGLKCGGTLEQRADRLFSVKGKKPEDIDPKLKA-KGKKGGKXXXXXVXXXXXXXXXXXXXXXXXXXXXKEERRKQLAALETKVKALL-EVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEE-------EDXXXXXEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQ 1492
            MS   LERAR  HED+E YE AI+  LE+KPRT KERV QQHR++NL +    RS  L  IYED  G+M+EE+A++RG+    +FY R+     YH  HP +PV   P V+ E E +V FSGEE++GK+ DL    + +  LPQ    + DY  +L  L  F  +P  +K    A+A ++ +L  YL  F+ RTQPL+++ E+L G+ D           ++FE  W+AG LPG   G    A  G   K     + +DL+ F  A EL  +GMDRLK GL+ALG+KCGGTLE+RA RLF+ KGKK E+IDPKL A  GKK  K                            E+ +KQ A  E ++  L+ EV  + ++ATK+ V+KKQTRT EE + E+++EE+G LP    E         XXXXX GPIYNPLNLPLG+DGKPIPYWLYKLHGLGVE+KCEICG+ SY GRR FDRHFQEWRHAHGMRCL IPNTKHFHDI  I+
Sbjct:    1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDLHGTMKEELATLRGRDAFPSFYARVDHAKEYHQKHPDVPVKHHPPVQDEAEPRVCFSGEEVFGKYLDLQASHMEFYALPQTP--KWDYQTYLSRLADFSVVPAGKK--NAAWARYVHNLYNYLLSFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPG---GWPVPAQGGGEEKGTENTKEVDLRGFRTAKELEVVGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAGNGKKXSKAEGNGPTSNGNGQGVGTDKEGGKGG---EDAKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPGLRGEGXXXXXXXXXXXXXXGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIK 498          
BLAST of mRNA_S-firma_F_contig109.1191.1 vs. uniprot
Match: A0A7S2HV93_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HV93_9STRA)

HSP 1 Score: 391 bits (1005), Expect = 3.390e-128
Identity = 236/496 (47.58%), Postives = 302/496 (60.89%), Query Frame = 2
Query:   32 MSSSLLERARGFHEDLEIYERAIIEQLENKPRTQKERVAQQHRIANLCDGSTERSLGLHDIYEDKDGSMREEVASMRGQKVMDNFYDRLKETWSYHTHHPGLPVTFGPNVEAETEVKVQFSGEELYGKFFDLHDMFVRWVNLPQ-CKDKQLDYSQFLQALGRFQDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLNEVLGDTDSSFEEAW---EAGTLPGWTSGRAATAAAGDAGKSAAAPRVLDLKKFHDADELRALGMDRLKEGLEALGLKCGGTLEQRADRLFSVKGKKPEDIDPKLKA--KGKKGGKXXXXXVXXXXXXXXXXXXXXXXXXXXXKEERRKQLAALETKVKALLEVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEEEDXXXXX---EGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQ 1492
            MS+SLLE+AR  +E+ E YER I +QL+ KP+T K+RV QQH I NL      +S  +  I++D D + ++E+ SM+G+    +FY+ L+ET  YH  +P L      N++AE E K QFSG EL+GK+ DL     R  N+ +    + ++YSQFL     F  +P + K R  +Y  +  DL  YL  F+ RTQPLV L E+  + D  FE+AW   EA  +   T  +A+    G         R+LDL KFH A E+ ALG+ RLK+G  ALGLKCGG   +RA+RL+  KG  P+    K+ A  K K+ GK                             + R  +A  E ++  L +   D LDA +R VDKKQT+ VEERD E  EEE GAL   ++EE XXXXX   EGP+YNPLNLPLGWDGKPIPYWLYKLHGLGVE+KCEICG+ SY GRR FDRHFQEWRHA+GMRCL IPNTKHFHDI LI+
Sbjct:    1 MSASLLEQARSSYENTEAYERTIGKQLDTKPKTNKQRVWQQHHIKNLIKHIQVQSKVVVAIHQDADETFKDELESMKGRNAFGSFYESLRETKEYHQRNPYLMPQNELNMDAEMECKAQFSGPELFGKYLDLVPFHARATNMKKHFGPEPVEYSQFLLDFHEFSKVPAELK-RAASYVSYTKDLCAYLMAFMARTQPLVSLEEMATEADEVFEKAWKDTEAEKVE--TENKASNYQEG---------RLLDLTKFHSAKEIEALGLARLKDGCLALGLKCGGGAGERAERLWRTKGLTPDQYPSKILASRKRKRDGKSDDKEA----------------------SDSRHDVARAEFRISFLCDQMADVLDAPRRYVDKKQTQLVEERDAEFAEEESGALAALDDEEXXXXXXXXDEGPLYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGNMSYWGRRAFDRHFQEWRHAYGMRCLKIPNTKHFHDITLIE 462          
BLAST of mRNA_S-firma_F_contig109.1191.1 vs. uniprot
Match: A0A812TNG2_SYMMI (SF3A3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TNG2_SYMMI)

HSP 1 Score: 355 bits (910), Expect = 1.880e-115
Identity = 190/384 (49.48%), Postives = 241/384 (62.76%), Query Frame = 2
Query:  341 VTFGPNVEAETEVKVQFSGEELYGKFFDLHDMFVRWVNLPQCKDKQLDYSQFLQALGRFQDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLNEVLGDTDSSFEEAWEAGTLPGWTSGRAATAAAGDAGKSAAAPRVLDLKKFHDADELRALGMDRLKEGLEALGLKCGGTLEQRADRLFSVKGKKPEDIDPKLKAKGKKGGKXXXXXVXXXXXXXXXXXXXXXXXXXXXKEERRKQLAALETKVKALLEVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEEEDXXXXXEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQ 1492
            +   P    E EV V FSGEE++GK+ DLH  +V++ NLP      +DY Q+L     F  IPE  K   KAY  +++ L EYL  F  R QPLV++ ++L +  ++FE+ W  G + GW   R   +  GD+       + L L  F+  DEL ALG+DRLK  +EALGLKCGGTL  RADRL+SV+G KP DI  KLKAK K+ G                             +  RK+ A LE  +++L  +  + + AT+R  +K+QTRT+EE+   ++EEE G LP+  EE D     EGP+YNPLNLPLGWDGKPIP+WLYKLHGLGVEFKCEICG+ SY GRR FDRHFQEWRHAHGMRCLG+PNTKHFHDI LI+
Sbjct:    1 MDINPEESMEVEVHVAFSGEEIFGKYLDLHSFYVQYCNLPNIPSHDVDYLQYLDKFNSFFYIPENSKSH-KAYVQYISSLWEYLLDFFRRVQPLVEVEDLLAEWRAAFEKKWSVGDVSGWAPPR--KSGGGDS-------QALRLGMFNSKDELEALGLDRLKGAMEALGLKCGGTLSDRADRLWSVRGVKPNDIPDKLKAKAKRAGSADNSG-----------------------DSARKKTALLEYLIQSLCSLMAEIVTATRRHAEKQQTRTLEEKLALLEEEEYGTLPDV-EEADDDEDDEGPLYNPLNLPLGWDGKPIPFWLYKLHGLGVEFKCEICGNQSYWGRRAFDRHFQEWRHAHGMRCLGVPNTKHFHDITLIE 350          
BLAST of mRNA_S-firma_F_contig109.1191.1 vs. uniprot
Match: A0A5B8MTJ1_9CHLO (Subunit 3 of splicing factor 3A n=4 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MTJ1_9CHLO)

HSP 1 Score: 351 bits (900), Expect = 2.590e-112
Identity = 211/509 (41.45%), Postives = 287/509 (56.39%), Query Frame = 2
Query:   32 MSSSLLERARGFHEDLEIYERAIIEQLENKPRTQKERVAQQHRIANLCDGSTERSLGLHDIYEDKDGSMREEVASM--RGQKVMDNFYDRLKETWSYHTHHPGLPVTFGPNVEAE---TEVKVQFSGEELYGKFFDLHDMFVRWVNLPQCKDKQLDYSQFLQALGRFQDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLNEVLGDTDSSFEEAWEAGTLPGWTSGRAATAAAGDAGKSAAA------PRVLDLKKFHDADELRALGMDRLKEGLEALGLKCGGTLEQRADRLFSVKGKKPEDIDPKLKAKGKKGGKXXXXXVXXXXXXXXXXXXXXXXXXXXXKEERR----KQLAALETKVKALLEVQTDTLDATKRQVDKKQTRTVEERDQEIQE-------EEQGALPEFNEEEDXXXXXEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQ 1492
            MSS+LLER R  HE++E  ER + +      ++   R+AQ HR+    DG  +RS  L  IY+D+DGS ++E+  M    Q+V   FY+RLKE   YH  HP L +      E E   +  +V FSGEE  G+F DLHD+   + N P+  +K L Y  FL     F+ IP+  KL  + Y  +L DL EYL GF  R+QPL  L   L   +  F+E WE G +  W           D G  A+       P+++DL+ F  A +L A+G DR+KE L ALGLK GG+L Q+A+RL + KGK  E++D KL AKGKK                              + +RR    K +A LE +++AL+++   TL  TK+QV+KK T T EE   +++E       ++QG     NE+++        IYNPLN+P+G+DGKPIPYWLYKLHGL  EFKCEICG+FSY GRR F++HF E RH HGM+CLGIPN+K F ++  I 
Sbjct:    1 MSSTLLERTRALHEEIERSERLVAKDFHTDAKSHTSRLAQNHRVFQCVDGIRKRSRDLLTIYDDEDGSRKDELEGMAAENQEVYSLFYERLKEARDYHRRHPDLELASVDKDEEEFLKSRPRVDFSGEEAQGRFLDLHDVHRSFTNAPKFGNKDLSYLDFLGMFCDFRSIPKPSKLN-QEYKAYLEDLDEYLVGFYGRSQPLASLGAPLAAVEKEFDEMWERGEVEDWE----------DKGLGASTSQVKDNPKLIDLEDFESAGDLEAVGGDRIKEALVALGLKAGGSLSQKAERLMATKGKALEELDRKLFAKGKK------------------------PVRNAEEAQRRLSLSKAIALLECRIRALMQLMEKTLSDTKKQVEKKATSTYEELVADMEELQDRGQGDDQGGDGTDNEDDENDNI----IYNPLNIPVGFDGKPIPYWLYKLHGLNQEFKCEICGNFSYWGRRAFEKHFNEARHLHGMKCLGIPNSKIFSEVTKID 470          
BLAST of mRNA_S-firma_F_contig109.1191.1 vs. uniprot
Match: UPI001C4E4908 (splicing factor SF3a60 homolog n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001C4E4908)

HSP 1 Score: 350 bits (899), Expect = 2.790e-112
Identity = 207/495 (41.82%), Postives = 288/495 (58.18%), Query Frame = 2
Query:   32 MSSSLLERARGFHEDLEIYERAIIEQLENKPRTQKERVAQQHRIANLCDGSTERSLGLHDIYEDKDGSMREEVASMRGQ-----KVMDNFYDRLKETWSYHTHHP-GLPVTFGPNVEA--ETEVKVQFSGEELYGKFFDLHDMFVRWVNLPQCKDKQLDYSQFLQALGRFQDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLNEVLGDTDSSFEEAWEAGTLPGWTSGRAATAAAGDAGKSAAAPRVLDLKKFHDADELRALGMDRLKEGLEALGLKCGGTLEQRADRLFSVKGKKPEDIDPKLKAKGKKGGKXXXXXVXXXXXXXXXXXXXXXXXXXXXKEERRKQLAALETKVKALLEVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEEEDXXXXXEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQ 1492
            MSS+LLE  R  HE++E  ER I++ L+ +P + +ER+ Q HR+ N+ D     +  L++IYEDKD + ++E+A++ GQ      V  +FYDRLKE   YH  HP    V  G   E   + E  V+FSGEE +G++ DLH+++  +VN      + ++YS +L    +   IP   KL  + Y  +L  L EYL  F  R +PL DL+ V    ++ +EE W  G + GW +       + + G ++A   V+DL  +   +EL  +G +RLKE L ALGLK GGT++QRA+RLF  K    E +D K  AK  +G                             + +  K++A +E K+K L E+  +T+  TK  V+KKQ  T EE + E +EEE  A  E +EE+         IYNPL LP+GWDGKPIPYWLYKLHGLG EFKCEICG+ SY GRR F+RHF+EWRH HGMRCLGIPNTK+F++I  I+
Sbjct:    1 MSSTLLEVTRAGHEEVERLERLIVKDLQREPASNRERLFQSHRVRNMIDSIISTTEKLNEIYEDKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPVARVVDAGEEYEELLKQEPHVEFSGEEAFGRYLDLHELYNEYVNSKF--GEPIEYSAYLDVFAQPHKIPRNHKLT-RQYREYLEHLLEYLIYFFQRKEPLQDLDRVFSKVEADYEELWVDGKIQGWEN------KSQENGHASAQDSVIDLDYYSSVEELIEVGPERLKEALAALGLKAGGTVQQRAERLFLTKHTPLEQLDKKHFAKLSRG------------------VEQNGNAASSQQMDNSKEIALIEAKIKHLCELLYETILQTKENVEKKQALTYEEMEAEREEEEVQADTESDEEDQQ-------IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIK 461          
BLAST of mRNA_S-firma_F_contig109.1191.1 vs. uniprot
Match: A0A7S3HNG2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNG2_9STRA)

HSP 1 Score: 350 bits (898), Expect = 3.600e-112
Identity = 214/495 (43.23%), Postives = 297/495 (60.00%), Query Frame = 2
Query:   35 SSSLLERARGFHEDLEIYERAIIEQLENKPRTQKERVAQQHRIANLCDGSTERSLGLHDIYEDKDGSMREEVASMRGQKVMDNFYDRLKETWSYHTHHPGLPVTFGPNVEAETEVKVQFSGEELYGKFFDLHDMFVRWVNLPQCKDKQLDYSQFLQALGRFQDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLNEVLGDTDSSFEEAWEAGTLPGWTSGRAATAAAGDAGKSAAAPRVLDLKKFHDADELRALGMDRLKEGLEALGLKCGGTLEQRADRLFSVKGKKPEDIDPKLKAKGKKGGKXXXXXVXXXXXXXXXXXXXXXXXXXXXKEERRKQLAALETKVKALLEVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGA--LPEF--------NEEEDXXXXXEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILI 1489
            SSS LE  R  HE +E YE A+ ++L+ KP  QK +V QQH++  L  G T+ S  L  +YED D +++EE+A +R   +  +FY  L+ +  Y    P    +   +++ + +VK  FSGEE++GK+ DL+++ +++ N+ +    + DY Q+L+    F  +PE  K + +AY+ +L +L  YL  F  RT PL D N+++ D  +    +      P  +    AT        + +A + L L  F+ A EL ALGMDRLKE LEALGLKCGGTL+ RA+RL+SV+GKKPEDI   LKAK     K                           K +    +A  E +VKA+ ++ +  ++AT R  +K+QTRT EER+ E++EEE G   LP+          E++D     + P+YNPLNLPLGWDGKPIPYW+YKLHGLGVE+KC+ICGD SY GRR FD+HFQEW+HAHGMR LGIPNTKHFHDI LI
Sbjct:    1 SSSQLELIRLNHELVEKYELAVGDELDVKPNGQKAKVWQQHKLKGLITGITKHSGELKRLYEDSDRTLQEELAVLRTPDLT-SFYAALQASKEYFETFPNAESSNASDIDVKVDVK--FSGEEIFGKYLDLNELHMQFSNVIKRAGIEQDYLQYLERFNDFFYLPEAVK-QSRAYSDYLDNLWTYLADFFQRTNPLSDWNKIMEDIKAGAPASL---LTPKESEETRAT--------NGSAAQPLRLGMFNTAGELEALGMDRLKEALEALGLKCGGTLQDRANRLWSVRGKKPEDIPANLKAKDTGSNKKRKLEAAA-------------------KGDEPDSVAWKEYRVKAVCDLMSSVVNATVRHAEKQQTRTAEEREAELREEEFGLAQLPQSAHGDGTKKGEDDDD----DAPVYNPLNLPLGWDGKPIPYWMYKLHGLGVEYKCQICGDHSYWGRRAFDKHFQEWKHAHGMRSLGIPNTKHFHDITLI 457          
BLAST of mRNA_S-firma_F_contig109.1191.1 vs. uniprot
Match: A0A067DVA8_CITSI (Matrin-type domain-containing protein n=6 Tax=Citrus TaxID=2706 RepID=A0A067DVA8_CITSI)

HSP 1 Score: 349 bits (896), Expect = 8.100e-112
Identity = 203/497 (40.85%), Postives = 287/497 (57.75%), Query Frame = 2
Query:   32 MSSSLLERARGFHEDLEIYERAIIEQLENKPRTQKERVAQQHRIANLCDGSTERSLGLHDIYEDKDGSMREEVASMRGQ-----KVMDNFYDRLKETWSYHTHHPGLPVTFGPNVEAETEVK----VQFSGEELYGKFFDLHDMFVRWVNLPQCKDKQLDYSQFLQALGRFQDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLNEVLGDTDSSFEEAWEAGTLPGW-TSGRAATAAAGDAGKSAAAPRVLDLKKFHDADELRALGMDRLKEGLEALGLKCGGTLEQRADRLFSVKGKKPEDIDPKLKAKGKKGGKXXXXXVXXXXXXXXXXXXXXXXXXXXXKEERRKQLAALETKVKALLEVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEEEDXXXXXEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQ 1492
            MSS+LLE  R  HE++E  ER +++ L+ +P + K+R+ Q HR+ N+ D  T+ +  L +IY DKD + ++E+A++ GQ      V  +FYDRLKE   YH  HP   V    + + E  +K    V+FSGEE YG++ DLH+++ +++N      K+++YS +L    R  +IP + K+  + Y  ++  L EYL  F  RT+PL DL+ +     + FEE W   TL GW T G+       + G   A    LDL  +   +EL  +G +RLKE L A GLK GGTL+QRA+RLF  K    + +D K  AKG +G                             +    K +A +E K+K L ++ ++T++ T + V KKQ  T EE + E +E         ++EE         IYNPL LP+GWDGKPIPYWLYKLHGLG EFKCEICG++SY GRR F+RHF+EWRH HGMRCLGIPNTK+F++I  I+
Sbjct:    1 MSSTLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKF--GKEIEYSAYLDVFSRPHEIPRKLKMT-RQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQ-------ENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARG------------------KEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAEREEXXXXXXXXXDDEEQQ-------IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIE 462          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig109.1191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUU5_ECTSI8.600e-29688.21Matrin-type domain-containing protein n=2 Tax=Ecto... [more]
A0A836CE40_9STRA2.300e-19158.27Matrin-type domain-containing protein n=1 Tax=Trib... [more]
A0A7S2W3N3_9STRA1.820e-13847.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9DC70_9STRA2.430e-13749.21Matrin-type domain-containing protein n=3 Tax=Mono... [more]
A0A7S2HV93_9STRA3.390e-12847.58Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A812TNG2_SYMMI1.880e-11549.48SF3A3 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A5B8MTJ1_9CHLO2.590e-11241.45Subunit 3 of splicing factor 3A n=4 Tax=Chloropico... [more]
UPI001C4E49082.790e-11241.82splicing factor SF3a60 homolog n=2 Tax=Proteaceae ... [more]
A0A7S3HNG2_9STRA3.600e-11243.23Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A067DVA8_CITSI8.100e-11240.85Matrin-type domain-containing protein n=6 Tax=Citr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig109contigS-firma_F_contig109:551..7927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FUU5
Preferred nameSF3A3
PFAMsDUF3449,PRP9_N,SF3A3,SF3a60_bindingd,Telomere_Sde2_2,zf-C2H2_jaz,zf-met
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00443
KEGG koko:K01676,ko:K10777,ko:K12827
KEGG ReactionR00381,R01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko03040,ko03450,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map03040,map03450
KEGG ModuleM00009,M00011,M00173,M00352,M00374
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000389,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009566,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043900,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045292,GO:0045595,GO:0045694,GO:0046483,GO:0050789,GO:0050793,GO:0050794,GO:0051239,GO:0051704,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904,GO:2000026,GO:2000241
Evalue1.35e-296
EggNOG OGsCOG5188@1|root,KOG2636@2759|Eukaryota
EC4.2.1.2,6.5.1.1
DescriptionmRNA splicing, via spliceosome
COG categoryA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Exons12
Model size1492
Cds size1461
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.346611-CDS-S-firma_F_contig109:550..6501622815633.346611-CDS-S-firma_F_contig109:550..650Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 551..650 -
1696949467.8211248-CDS-S-firma_F_contig109:550..6501696949467.8211248-CDS-S-firma_F_contig109:550..650Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 551..650 -
1622815633.3582752-CDS-S-firma_F_contig109:1140..13041622815633.3582752-CDS-S-firma_F_contig109:1140..1304Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 1141..1304 -
1696949467.833001-CDS-S-firma_F_contig109:1140..13041696949467.833001-CDS-S-firma_F_contig109:1140..1304Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 1141..1304 -
1622815633.3718305-CDS-S-firma_F_contig109:1960..21011622815633.3718305-CDS-S-firma_F_contig109:1960..2101Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 1961..2101 -
1696949467.8511696-CDS-S-firma_F_contig109:1960..21011696949467.8511696-CDS-S-firma_F_contig109:1960..2101Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 1961..2101 -
1622815633.3879173-CDS-S-firma_F_contig109:2741..28881622815633.3879173-CDS-S-firma_F_contig109:2741..2888Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 2742..2888 -
1696949467.8602805-CDS-S-firma_F_contig109:2741..28881696949467.8602805-CDS-S-firma_F_contig109:2741..2888Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 2742..2888 -
1622815633.3998837-CDS-S-firma_F_contig109:3652..38121622815633.3998837-CDS-S-firma_F_contig109:3652..3812Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 3653..3812 -
1696949467.8737023-CDS-S-firma_F_contig109:3652..38121696949467.8737023-CDS-S-firma_F_contig109:3652..3812Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 3653..3812 -
1622815633.4141097-CDS-S-firma_F_contig109:4167..43101622815633.4141097-CDS-S-firma_F_contig109:4167..4310Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 4168..4310 -
1696949467.8832548-CDS-S-firma_F_contig109:4167..43101696949467.8832548-CDS-S-firma_F_contig109:4167..4310Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 4168..4310 -
1622815633.426389-CDS-S-firma_F_contig109:4950..50461622815633.426389-CDS-S-firma_F_contig109:4950..5046Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 4951..5046 -
1696949467.898332-CDS-S-firma_F_contig109:4950..50461696949467.898332-CDS-S-firma_F_contig109:4950..5046Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 4951..5046 -
1622815633.4386373-CDS-S-firma_F_contig109:5507..56331622815633.4386373-CDS-S-firma_F_contig109:5507..5633Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 5508..5633 -
1696949467.9081087-CDS-S-firma_F_contig109:5507..56331696949467.9081087-CDS-S-firma_F_contig109:5507..5633Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 5508..5633 -
1622815633.4494717-CDS-S-firma_F_contig109:5974..60491622815633.4494717-CDS-S-firma_F_contig109:5974..6049Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 5975..6049 -
1696949467.9182277-CDS-S-firma_F_contig109:5974..60491696949467.9182277-CDS-S-firma_F_contig109:5974..6049Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 5975..6049 -
1622815633.462208-CDS-S-firma_F_contig109:6403..64961622815633.462208-CDS-S-firma_F_contig109:6403..6496Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 6404..6496 -
1696949467.928923-CDS-S-firma_F_contig109:6403..64961696949467.928923-CDS-S-firma_F_contig109:6403..6496Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 6404..6496 -
1622815633.475259-CDS-S-firma_F_contig109:6839..69501622815633.475259-CDS-S-firma_F_contig109:6839..6950Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 6840..6950 -
1696949467.9367564-CDS-S-firma_F_contig109:6839..69501696949467.9367564-CDS-S-firma_F_contig109:6839..6950Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 6840..6950 -
1622815633.4910066-CDS-S-firma_F_contig109:7791..78961622815633.4910066-CDS-S-firma_F_contig109:7791..7896Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 7792..7896 -
1696949467.945322-CDS-S-firma_F_contig109:7791..78961696949467.945322-CDS-S-firma_F_contig109:7791..7896Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig109 7792..7896 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.506456-UTR-S-firma_F_contig109:7896..79271622815633.506456-UTR-S-firma_F_contig109:7896..7927Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig109 7897..7927 -
1696949467.9578748-UTR-S-firma_F_contig109:7896..79271696949467.9578748-UTR-S-firma_F_contig109:7896..7927Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig109 7897..7927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig109.1191.1prot_S-firma_F_contig109.1191.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig109 551..7896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig109.1191.1

>prot_S-firma_F_contig109.1191.1 ID=prot_S-firma_F_contig109.1191.1|Name=mRNA_S-firma_F_contig109.1191.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=487bp
MSSSLLERARGFHEDLEIYERAIIEQLENKPRTQKERVAQQHRIANLCDG
STERSLGLHDIYEDKDGSMREEVASMRGQKVMDNFYDRLKETWSYHTHHP
GLPVTFGPNVEAETEVKVQFSGEELYGKFFDLHDMFVRWVNLPQCKDKQL
DYSQFLQALGRFQDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDL
NEVLGDTDSSFEEAWEAGTLPGWTSGRAATAAAGDAGKSAAAPRVLDLKK
FHDADELRALGMDRLKEGLEALGLKCGGTLEQRADRLFSVKGKKPEDIDP
KLKAKGKKGGKGKSNGVAPGHGADANASANGAGSGGGGKEERRKQLAALE
TKVKALLEVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEE
EDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSY
KGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQ
back to top

mRNA from alignment at S-firma_F_contig109:551..7927-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig109.1191.1 ID=mRNA_S-firma_F_contig109.1191.1|Name=mRNA_S-firma_F_contig109.1191.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=7377bp|location=Sequence derived from alignment at S-firma_F_contig109:551..7927- (Sphaerotrichia firma ET2_F female)
ATAATCGCCGGGCTTGCTTTGATCACAAGCCATGTCTTCTTCGCTGCTTG AGAGAGCGCGGGGTTTTCACGAGGACCTCGAGATCTACGAGCGCGCGATC ATCGAGCAGCTGGAGAACAAGCCGCGTACACAAAAGGTTAGGGAGAGAGG GAGATCGCCTCTCCTTGGGCACACCGGTCTTTGCTGTTGCTGCAGGGACA ACATCACACGAGATGAATCGTTTGTCGGTGTTGGTAAACGTGGCGGGTTG TTAGCTTTGGGATCTGGCATTTCAGTGGGTGTGTCTAGCTGCTGCTGGCT GCCCCTGTCGGATGGATGATACAACACGCGTGGGATGGGTCTTAACCCCC CCACCCTACTCACTACTGCTGTTGCGGCCACCATGTGTAAGATCTCGTAG TGCTAGGTAAGGTAGCCGTGGATGGGCGGCGTTGTGTCACCCAATTCTCG GTGAGCTTTCGTGGGCCCATCTACGGAGCCGCGAAGAAGCAGCCTATCGA CATACTGCTTGTAGGTGGCCTGTGTGCCGCGCTGCCGCAGCTGAGAGTAC ACGACTGCTGTAGCGGCAACCATGTACCCATCTCAGTCATGCCTACCATC GACCACAGGAAGTACAGCAGTAGTGAGCAAACGTGCAACCGCACTGGGTG CTTGGCACGTTGTGCGGAGCACGGCCAGAACCGGGATCGCTGGAAGGACT TGCAGCCGTCAGCCGTACTCAACCAGAGGGCGCGCCGCGGCCACTTTCTG CCTATTACGTGCTGCTGTGTGCGCGTCTCGCTCCAGAAAGACGCTGCGTC GCTGCTCTCGGCAATAATCCATTACTTTTGGTGACAGGCTCGTTGCAGGA AGACAGCAGTAGTAGTGGCATCACATACGGTACGTAGAACACTTTTTTTC ACCTTCACGTTCCGGTGGTTTAAAACCACAACTTCCCATCCGCTGCCCCC CCCTCCCTTCGTACCCACGCGAACCAGGAGCGCGTGGCACAACAGCACCG CATAGCCAACCTCTGCGACGGTTCTACCGAGCGCAGCCTGGGTCTCCATG ACATTTACGAAGATAAGGACGGCTCTATGAGGGAAGAGGTGCGATCATCA GCAACTTCCATAGCAACTTTGTTTCCACCTTCCACCTGGACTGCGTGGAG CGCGGGGCGGGGTTTTGTGGCGGATGTCCTGGTCTTTTGGCTCTCCTCCT CTCTCCTGCCCTCTGCGAAGCCTCCCCCCTGTTCATCATGTCATCTCTCT GTGTATCCCTCTGTCTCTGTTCCTCTCCCGGACCTTCATATGTATGGGTC CCGTCTCCCCTGTCAGACAGCAGTGCACCTCCGTGCCAACAGTCAGAAGT CTCCTGCTTGACCCCCAACCCAAGCCATCCTCGGTTCGAACCCCCCATCT TAACATCAACCCCCGTTGTCTCGAAAAACAGGTTGCGTCCATGAGGGGCC AGAAGGTGATGGACAACTTCTACGACCGGTTGAAGGAGACGTGGAGCTAC CACACGCATCACCCCGGGCTGCCGGTGAGGGTCAAGAGTGTGGGCGGAGT TGTTTCTGTGGGGAGGCTTTCTACGGGAGGAGCTGAGGCATTGGTTTTTG TTGTTCACGCGGAAAGCATCCCGGGTACTAGTGGTTGTACGTGACTTGCC TGCAGTTTCGATCTACGTTCTTGTTTCTGCTTCCGCCTCATGTCCGGGGA GCCACGACGTCCCGTTCAACGTTTGTTGCGAAGGCAAGGCCCCCGAGCAA CCGTGACTTTGCGGTCGGCCTTGCTCCCAGTTTGGTTTTGCGCGTCCGAG CACCGAAGTCACAGCTGCCGCCGGCCTGTGGCGCGTTCTAACGTAGACTT TTGGCCCGTTTTTGTTGTTGTTTTGCAGGTGACTTTCGGGCCTAATGTGG AGGCGGAGACGGAGGTGAAGGTGCAGTTCTCCGGAGAAGAGCTATACGGC AAGGTGAGGGAGGTTCTGAGGTTCTGGGGTGGGGCGCGGATGTGGGTGTG GGGGCAGGGTACCGCGCCCAGTAAACACGTGGCAGAGTTGCGTACAATCA AACAAGGATGCGGCGGAGACAGCTGTTTCGGGCTCCCACGTAACCTACAT CTCGGTTGGTGTGGGCGCGAATGTTTTATGTTTTCTCTCAGCGATTGAAC TGGCAAGCAGTTGCAACCTATTTAGCTGCTGTCCTTTCATTGAGTTTGTG CTGCATCATTGGCTGGCTTTCCGTTCACCTCGTCGAATCGACTCTTTCGT CTGATGCGTTGGCTGCCGTCGTCGCGTGTCGCCGGCCGCGTCAGTTCTTC GACCTGCACGACATGTTCGTGCGGTGGGTGAACCTCCCGCAGTGCAAGGA CAAGCAGCTGGACTACTCGCAGTTCCTGCAGGCCTTGGGGAGGTTCCAGG ACATCCCCGAGCAGGAGAAGGTGCGCGGCTTATGTGGGAGCTAGATTTCT TGGGGCCGTACGCCGTCGGTGTCTGTCAACGGTCGGTAGTCAACGGTCGG GCTGCGGGGTAAGAGCTGTCCCTCTGAGTGGAGACACCGCACTGCTTGGC ATGAAAGATCCATGCTTGGTTGTGGCTCGGCCCCCTTTTGTTCTTCTCCC CTCATGCACCACGTTCAGCATACCTTGCCGTTTGGTTCCCGGCACGTAGT GCTTTTGATGGTTCATTGGGGATGTCCGGCTTGTGTTTGTTGTGGGGTGC TGCTCTGCGCTGCTGCTGCTGTCGCTGCCGTTTGGTTTCTCGTCGCTGTC GTTGCCGTCGTGTCCCGACTGCGGTCACGAGGCAAATGGCAAGACCGGAC TTGTTTCAAGCATGGTATCTCACGCTCTCGCTTCGCTGTGTTTTTTTTTT TGGCTCTCTCGGCTGTTCCTCGTCCCGCCAGCTCCGCGGGAAAGCCTACG CGGGGTTCTTGGCCGACCTGAGGGAGTACCTGGGAGGCTTTCTCACCCGC ACGCAACCCCTCGTCGACCTCAACGAGGTAGGGTGGCGTCTGGTGGTGGG GAGATGGCCGCGCTGTGACGTTTCCACCAAGGCCTTTTCGATGTGCTGCG GGTAGATGCTCTCTTGCTTGCCACGCCTTGTCGGACGGCTGTCCCGTGTG TGGTGTCCTAGCCTTTTGGAACAGTTCCCTTTGTTGCTGTTGCATCTGTT GCAGTTGTTGGTTGCTGCCGCCGCCGCTGTTGTTGTTGTTGTCGTCGTCG TTGATGTTTCTTGGGTGCGAACCATGCATTGGTCTCTCGCCCCAATAGCC TTGGACGCGGGACTGTCGAGGGTTTCGGACGCTGCCGACAACGGCCCGTA CCTCACGACCGCCTTTTCTCTTTCGTGCTTTTTTTGGGGGCGGGGTGTCA CCCTGCTCTGTCTCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT TCTTCTTGTTGGTTTACCTCACGACCGCTTTTTCTCTTTCGTGCTTATTT TGGAGGCGGGGTGTCACCCTGCTCTGTCTCTTTTTTTCTTCTTCTTCTGC TTCTTCTTCTTATTGGTTTACCTCACGACCGCTTTTTCTCTTTCGTGCTT TTTTTGGGGGCGGGGTGTCACCTTGCTCCGTCTCTCTTTTTTTTCTTCTT CTTGGGTTGCCAACAAGGTGTTGGGTGACACCGACAGCTCGTTCGAAGAG GCGTGGGAGGCTGGAACGTTACCGGGGTGGACCTCCGGGCGAGCCGCGAC GGCAGCGGCTGGGGATGCGGGGAAAAGCGCGGCGGCTCCGAGAGTATTGG ACTTGAAGAAGTGAGCTTTCATACCTTCGGTGGTGGCGGGCGGGAGCGGT GGCAGTGGTGTTGGTGTTTGCTGTAGGAGGGGATCGTAGGCATGCTTGTT CGCCGGAGAGGAGGTGGTCGGATGGCGTCGATCTTCGTGCTCACACGGCA TCGCCTCATTCGTTTGTATCATACGCGGTGATGCGCGCTGCCTGTCGGCG GTCGCATGGCGTCCGGTGCTGCTCGAGTGGCGTTTGTTGTTGCGGTGTGC TCGGACGACCTTGTTTTCTTGCCCCTTTCGGCGCTGGCGTCAGTCATCTC TTGCCGTGCGACAACTTGATGTGGCGATGCCACCCTCCTGTTTTCGGCGT TGCTTTTGCGTTCAGGTTCCACGACGCAGACGAGCTTCGCGCTCTGGGCA TGGATCGCTTGAAGGAGGGGCTTGAGGCGCTCGGCCTCAAGTGCGGCGGA ACCCTGGAGCAGAGGGCGGACCGGCTGTTTTCCGTGAAGGGGAAGAAGCC GGAGGATATTGACCCGAAGCTCAAGGTATGTTGTCTCTCTGAATGTTGAT GTACTTCTGTTGAGTGGTGCAAGGCATCCCTTTGGATGTTGAATGTTCTG GTTAGTGTAGCTGGTAGCTCGGAACCCACCGAGCTGTTGGGTTGGTTAAA TGAGTGGAGTTTTTTTTTGTGCAGGGGTATCGAGTCGCTCGTTGGGTGGT TTCGAGGGAGTTGTTATGTGGTTGATGATGATGATGAGGAAGGAGGGAGT GAAAAAGCCGAAACACCCCGTTTGTGAGACCGAAGTTAGAGGGGGAGGCC GCTGCAACACCGTCTTGGGTAAGCTTAAAGTCAGGCAAAGCGCAAGGTCT TGAAAAAGACTCGGCGACACGACGATCACAACGAAACAAAACACGACGCA GAGCAGAGGGGGTGTGGGTGCGTGCGCACAACCGAAGTCGGTGGTTCGGG GCATTTATGCAGTCGCGCATGCTGAACGTGCACGTTCACGTCTGTGTGGT TAAAGGGTGATGTCCAAAACTTGAAAACTTGCCCTTGGCAAACCCGGTTG GCGTTAGAGAACACGAGGATGATTACTAGCAGCCGCTCAACCGTATCGTT GGGACGCACTGCGGTGGGTTCGTTCTCGCTGGTTGCATACATAGCCTCGT GGGCGCAATGCTCCCATCTGTCATTCGTGCACACGTTTGCGAGCGAGGTC AGGGGAATTGCCTCGAAACTTCGGACGTGCGCGTTTTCTCGTGAGGTTCC GCCGACGCTCACCGCCGCGTGTGCGCGCGCGACCATCAGGCAAAGGGAAA GAAGGGAGGAAAGGGCAAGAGCAACGGAGTGGCGCCGGGTCACGGCGCGG ACGCTAACGCGAGCGCGAACGGGGCGGGGAGTGGCGGCGGCGGCAAGGAG GAGAGGCGCAAGCAGCTGGCCGCTTTAGAGACAAAGGTACCCTTGTGTTT CGAGTTCGGGGGTATAGCATATGCCGGGCGTATTACCGGCACAACATCAG GGGCAACAGCAGCACCAACACCAGCAGCACTAGAACAACATCGTCCGCCT TGGTGCACCTGTTGCGCAGATGTACAATTTAAAACTCGCTGGATTGGTTC GTGTTAAAATAGTACTCCACCAACTTTTGACGTCCTGAATCGTATGTATG CACCACCGGGGAAAAAGCTTGAGTGTTTTTGCCGTAGCCAGAAAAGCCCC CACAGTCAACCTTTCGCTCCCCGAACAACGCGAGTCGTGCGATGTTGTGT GTACCCTAGCGTACCGACGTCTGGCGTTGAGCTGCTGCCAGTGTCGACGC GGGTCGTTGGTGCGCGGAAGGGTAAAAGCTTACAACTTAGGTGCCTGCTA AGAGGTGCAGCTCTGCTGTGGTGCACTTGATGCGGTTTGTCGTACATACT GACAGGTCCGACACGGATTCCGAAGCGTAAAGTACCACATCAGTCTTGAC CGTTGCGGTGTCACTTTCCGTTGTGTTTTGTGTCTATTTGTTTTCCCCTT GCGCGCGTGCCCTCTGAGTTACCTCTCTTCTTTCCTCTTGTCTCCACCCA CCTGTCCTGTTCTGTCCTGTCCACAGGTGAAGGCCCTTCTCGAGGTGCAG ACGGACACGTTGGATGCGACGAAGCGACAGGTGGACAAGAAGCAGACGAG GACGGTCGAGGAGCGAGACCAGGAGATCCAGGAGGAGGAGCAGGGGGCAC TCCCGGAGTTCAACGAGGTATGCATGTAGTATTGTTTGATACGGCGGTGC CGCCCCTGACCTTAAGGCGCTTCACATGGAGGGATCCTGGACTCCCACGA GCACAAGGAGTCGGTTGGGCTGCTTGTTTGTTGGTGCCGACAACCGAGCA GCAGAAAACCTGGTCGTGGCGTTTTGATCTGGTTTGAGGTCGACCTGATG TGGCCGTCGACCCCGATTTGTGGTACCGCCTTCTTTTTAACGCCCTGTCT CGGCTAGTTACTTCGATACAAGCCACCGTTTGTCCAAACTCCGGGCCGCT GGAAAATGTACAACAACCCAATGCACATGCTCGCATCTGTCAACCATGAG GTAGATGTGGTGTGACGTGCATACCGCACTTCGCGGTCCGCTGCGGGGGT GTGGGAGAAAGCTCGATCATGTAGCCGGCAAAAGAAGAGGCGCTGAAAGC ATCGAAATACGGCGCCCCAGTCTCCCCAAGAAATCATGCAGCGACAAATG GCTCTTTTGTTCTTGTTGGTCTTCCATTCCAGCCAGCTTTTCCACCCACG TATTCTATATCCGTCACCACGCATTGTTGTAACCTCGCCTTTATTTATTT TTTTTTGTTTTGTCGAACTGCTGTATCTGTTTTTTCACACGTATCAATCG TATGATGTGATACGGTACCCCAGGAGGAAGACGAGGAGAGCGACGAGGAA GGCCCGATCTACAACCCCCTCAACCTTCCCCTCGGATGGGACGGCAAGCC GATCCCCTACTGGCTCTACAAGCTTCACGGGCTCGGGGTCGAGTTCAAGT GCGAGATCTGCGGCGACTTCAGCTACAAGGGTCGGAGGTGCGTGCGCGGA GTGTTAGTGTTGTGTGTGGAGGCGTTTGGGTTCATCCGGCTGTTTGTCTT GTTTGCTTGCTCGCGCACGAGGGCGGCGGTGGGGAACAGTCGGCGTCCAG CGCCACCCAGGAAACAAGGAAGACGTGCGTGCACGTCGCGTTTTTTTGGG GTGGACAATTGTCGGCGGGGTCGGAGACGTGTGTAGTTTAGTTTACGTAG TTTACGACTCAGAGGTGGTGTCTTCTTTTTTCTTGTCCAGGATGTGCACC ATTGTTTCTGTCGCGAGTCGTCTTCATGCCGGGCTGACCTGCGCGGCGAG GCGGAGGGCCCCTTTTTGGCTACTTGATCGATGCTCTGCAGCGGAGTGAA AGAACAGCTGTCCATTATTGTACGTGCGGACAGGGGAGATTGCTGCTCCC TCCCTCTCGTGGTGTCAAAGGTCGTGCGATGTGATCTCTTGTGGTGGGCT GTGCTGTGCTGTGCTGTGCTGCCACAGGAACTTCGACCGACACTTCCAGG AGTGGCGTCACGCGCACGGCATGCGCTGCTTGGGCATCCCGAACACCAAG CACTTCCACGACATCATCCTTATCCAG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig109:551..7927-

>mRNA_S-firma_F_contig109.1191.1 ID=mRNA_S-firma_F_contig109.1191.1|Name=mRNA_S-firma_F_contig109.1191.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2922bp|location=Sequence derived from alignment at S-firma_F_contig109:551..7927- (Sphaerotrichia firma ET2_F female)
ATGTCTTCTTCGCTGCTTGAGAGAGCGCGGGGTTTTCACGAGGACCTCGA
GATCTACGAGCGCGCGATCATCGAGCAGCTGGAGAACAAGCCGCGTACAC
AAAAGATGTCTTCTTCGCTGCTTGAGAGAGCGCGGGGTTTTCACGAGGAC
CTCGAGATCTACGAGCGCGCGATCATCGAGCAGCTGGAGAACAAGCCGCG
TACACAAAAGGAGCGCGTGGCACAACAGCACCGCATAGCCAACCTCTGCG
ACGGTTCTACCGAGCGCAGCCTGGGTCTCCATGACATTTACGAAGATAAG
GACGGCTCTATGAGGGAAGAGGAGCGCGTGGCACAACAGCACCGCATAGC
CAACCTCTGCGACGGTTCTACCGAGCGCAGCCTGGGTCTCCATGACATTT
ACGAAGATAAGGACGGCTCTATGAGGGAAGAGGTTGCGTCCATGAGGGGC
CAGAAGGTGATGGACAACTTCTACGACCGGTTGAAGGAGACGTGGAGCTA
CCACACGCATCACCCCGGGCTGCCGGTTGCGTCCATGAGGGGCCAGAAGG
TGATGGACAACTTCTACGACCGGTTGAAGGAGACGTGGAGCTACCACACG
CATCACCCCGGGCTGCCGGTGACTTTCGGGCCTAATGTGGAGGCGGAGAC
GGAGGTGAAGGTGCAGTTCTCCGGAGAAGAGCTATACGGCAAGGTGACTT
TCGGGCCTAATGTGGAGGCGGAGACGGAGGTGAAGGTGCAGTTCTCCGGA
GAAGAGCTATACGGCAAGTTCTTCGACCTGCACGACATGTTCGTGCGGTG
GGTGAACCTCCCGCAGTGCAAGGACAAGCAGCTGGACTACTCGCAGTTCC
TGCAGGCCTTGGGGAGGTTCCAGGACATCCCCGAGCAGGAGAAGTTCTTC
GACCTGCACGACATGTTCGTGCGGTGGGTGAACCTCCCGCAGTGCAAGGA
CAAGCAGCTGGACTACTCGCAGTTCCTGCAGGCCTTGGGGAGGTTCCAGG
ACATCCCCGAGCAGGAGAAGCTCCGCGGGAAAGCCTACGCGGGGTTCTTG
GCCGACCTGAGGGAGTACCTGGGAGGCTTTCTCACCCGCACGCAACCCCT
CGTCGACCTCAACGAGCTCCGCGGGAAAGCCTACGCGGGGTTCTTGGCCG
ACCTGAGGGAGTACCTGGGAGGCTTTCTCACCCGCACGCAACCCCTCGTC
GACCTCAACGAGGTGTTGGGTGACACCGACAGCTCGTTCGAAGAGGCGTG
GGAGGCTGGAACGTTACCGGGGTGGACCTCCGGGCGAGCCGCGACGGCAG
CGGCTGGGGATGCGGGGAAAAGCGCGGCGGCTCCGAGAGTATTGGACTTG
AAGAAGTGTTGGGTGACACCGACAGCTCGTTCGAAGAGGCGTGGGAGGCT
GGAACGTTACCGGGGTGGACCTCCGGGCGAGCCGCGACGGCAGCGGCTGG
GGATGCGGGGAAAAGCGCGGCGGCTCCGAGAGTATTGGACTTGAAGAAGT
TCCACGACGCAGACGAGCTTCGCGCTCTGGGCATGGATCGCTTGAAGGAG
GGGCTTGAGGCGCTCGGCCTCAAGTGCGGCGGAACCCTGGAGCAGAGGGC
GGACCGGCTGTTTTCCGTGAAGGGGAAGAAGCCGGAGGATATTGACCCGA
AGCTCAAGGTTCCACGACGCAGACGAGCTTCGCGCTCTGGGCATGGATCG
CTTGAAGGAGGGGCTTGAGGCGCTCGGCCTCAAGTGCGGCGGAACCCTGG
AGCAGAGGGCGGACCGGCTGTTTTCCGTGAAGGGGAAGAAGCCGGAGGAT
ATTGACCCGAAGCTCAAGGCAAAGGGAAAGAAGGGAGGAAAGGGCAAGAG
CAACGGAGTGGCGCCGGGTCACGGCGCGGACGCTAACGCGAGCGCGAACG
GGGCGGGGAGTGGCGGCGGCGGCAAGGAGGAGAGGCGCAAGCAGCTGGCC
GCTTTAGAGACAAAGGCAAAGGGAAAGAAGGGAGGAAAGGGCAAGAGCAA
CGGAGTGGCGCCGGGTCACGGCGCGGACGCTAACGCGAGCGCGAACGGGG
CGGGGAGTGGCGGCGGCGGCAAGGAGGAGAGGCGCAAGCAGCTGGCCGCT
TTAGAGACAAAGGTGAAGGCCCTTCTCGAGGTGCAGACGGACACGTTGGA
TGCGACGAAGCGACAGGTGGACAAGAAGCAGACGAGGACGGTCGAGGAGC
GAGACCAGGAGATCCAGGAGGAGGAGCAGGGGGCACTCCCGGAGTTCAAC
GAGGTGAAGGCCCTTCTCGAGGTGCAGACGGACACGTTGGATGCGACGAA
GCGACAGGTGGACAAGAAGCAGACGAGGACGGTCGAGGAGCGAGACCAGG
AGATCCAGGAGGAGGAGCAGGGGGCACTCCCGGAGTTCAACGAGGAGGAA
GACGAGGAGAGCGACGAGGAAGGCCCGATCTACAACCCCCTCAACCTTCC
CCTCGGATGGGACGGCAAGCCGATCCCCTACTGGCTCTACAAGCTTCACG
GGCTCGGGGTCGAGTTCAAGTGCGAGATCTGCGGCGACTTCAGCTACAAG
GGTCGGAGGAGGAAGACGAGGAGAGCGACGAGGAAGGCCCGATCTACAAC
CCCCTCAACCTTCCCCTCGGATGGGACGGCAAGCCGATCCCCTACTGGCT
CTACAAGCTTCACGGGCTCGGGGTCGAGTTCAAGTGCGAGATCTGCGGCG
ACTTCAGCTACAAGGGTCGGAGGAACTTCGACCGACACTTCCAGGAGTGG
CGTCACGCGCACGGCATGCGCTGCTTGGGCATCCCGAACACCAAGCACTT
CCACGACATCATCCTTATCCAGGAACTTCGACCGACACTTCCAGGAGTGG
CGTCACGCGCACGGCATGCGCTGCTTGGGCATCCCGAACACCAAGCACTT
CCACGACATCATCCTTATCCAG
back to top