mRNA_S-firma_F_contig10898.1190.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10898.1190.1
Unique NamemRNA_S-firma_F_contig10898.1190.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10898.1190.1 vs. uniprot
Match: D8LU43_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU43_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.280e-22
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 3 
Query:  228 MGDPAS-AQKRGLEALEKARPLDKAGRTKEAAVLYKEHIACFQVALRAPDLSPAMRNILSESAREWQKRVTEIESQQQQQAGAGG 479
            MGD AS AQ+RGL ALE+AR LDKAG+ +EAAVLYKEH+ACF+ A+RAP+LS  MR +LS+S  EWQKRV +IE QQQ   G GG
Sbjct:    1 MGDAASDAQERGLAALERARALDKAGKIQEAAVLYKEHVACFKTAMRAPNLSGGMRKLLSDSIEEWQKRVAQIEPQQQ--GGVGG 83
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BLAST of mRNA_S-firma_F_contig10898.1190.1 vs. uniprot
Match: D8LU45_ECTSI (Similar to calpain 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU45_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 6.810e-14
Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 3 
Query:  228 MGDPASA-QKRGLEALEKARPLDKAGRTKEAAVLYKEHIACFQVALRAPDLSPAMRNILSESAREWQKRVTEIESQQQQQAGAGG 479
            MGD A   Q  GL A E+AR LD+AG T+EAAVLYKEHIAC +  L+AP LS  +R +LS+S  E QKRVTEI  +Q   +G GG
Sbjct:    1 MGDAAGGTQASGLTAAERARSLDEAGNTQEAAVLYKEHIACARRTLQAPSLSNTVRKLLSDSIEECQKRVTEIVFRQ---SGGGG 82
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10898.1190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU43_ECTSI2.280e-2267.06Calpain catalytic domain-containing protein n=1 Ta... [more]
D8LU45_ECTSI6.810e-1457.65Similar to calpain 7 n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10898contigS-firma_F_contig10898:2131..3752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size486
Cds size444
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10898.1190.1prot_S-firma_F_contig10898.1190.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10898 2131..3712 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.163828-CDS-S-firma_F_contig10898:2130..21691622815633.163828-CDS-S-firma_F_contig10898:2130..2169Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10898 2131..2169 +
1696949467.727286-CDS-S-firma_F_contig10898:2130..21691696949467.727286-CDS-S-firma_F_contig10898:2130..2169Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10898 2131..2169 +
1622815633.1781867-CDS-S-firma_F_contig10898:2885..31781622815633.1781867-CDS-S-firma_F_contig10898:2885..3178Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10898 2886..3178 +
1696949467.7391546-CDS-S-firma_F_contig10898:2885..31781696949467.7391546-CDS-S-firma_F_contig10898:2885..3178Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10898 2886..3178 +
1622815633.1911266-CDS-S-firma_F_contig10898:3600..37121622815633.1911266-CDS-S-firma_F_contig10898:3600..3712Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10898 3601..3712 +
1696949467.7508154-CDS-S-firma_F_contig10898:3600..37121696949467.7508154-CDS-S-firma_F_contig10898:3600..3712Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10898 3601..3712 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.2024195-UTR-S-firma_F_contig10898:3712..37521622815633.2024195-UTR-S-firma_F_contig10898:3712..3752Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10898 3713..3752 +
1696949467.759384-UTR-S-firma_F_contig10898:3712..37521696949467.759384-UTR-S-firma_F_contig10898:3712..3752Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10898 3713..3752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10898.1190.1

>prot_S-firma_F_contig10898.1190.1 ID=prot_S-firma_F_contig10898.1190.1|Name=mRNA_S-firma_F_contig10898.1190.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=148bp
LPHTRSRRGWYLETGDSSLPRRQLGGSLPQFGVRGPKHCIKKKRHRRYRV
VTKQVPRPSGRTISLLPRGSLPNVPRWATRRARRREAWRRWRRRGRWTRP
AGPRKRPCCTRNTSRASRWPCERRICPRPCETYSRRVRGSGRSESQR*
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mRNA from alignment at S-firma_F_contig10898:2131..3752+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10898.1190.1 ID=mRNA_S-firma_F_contig10898.1190.1|Name=mRNA_S-firma_F_contig10898.1190.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1622bp|location=Sequence derived from alignment at S-firma_F_contig10898:2131..3752+ (Sphaerotrichia firma ET2_F female)
TTGCCGCACACCCGCTCTCGACGTGGCTGGTATTTAGAGGTGAAGTACCC
GTGCTCAATGACCTCGCCTGCTTCATTCGATTCCAGGAAATTGTGTAGTC
TGAGAGAGCAACTGAACAACAGGGACATTCAAATTTGTCCGATTGCGCCG
CACCTGCTGCTGTGCTGTTTGCAGTTGAGAGTCGAAGCACACGTCGTAGC
CGTGGCCGCCTGTCTCTCTCCCTCCCGTTCCTCTGCTGGCTTCTGGTAAC
AACCCCTGCAAATGAGACCCCTGAATAGTCTAGTATGTGCGATGCCGCAG
CTTGATATTGGTCCAAGTTCGCTTTACCCACGAGAGAGTATGATCGAGAT
GATGGTGTTCCCCACTCTCGCTCTTTTATGTACATGTACCTCACGAGCAC
CTACTGCAGTAGGCCATCGGGGGTTATGTGCACGTCAGTTGGCACGAAAA
ACAAGCTGTGCATTTGCTTCGACGTTTTGTACGCTGGTCTCCAAGGGAAG
AGCGGTACATACCGCTGTAGATTTACGAAACGTAAATTATATTTTGTGCA
GTCTTCACCAACTCACCGCGGCGTGTCTCCTGACTGCTCCAGTGGCGGCT
GGCTTTCGTGCTCGCCGGCAGCCCTGACGGTGCTGCTCTCTCGGCTGCTA
GACCAAATTGCATCGACCACCCTGAACTTCCCCCCTCACCTCACCATTAG
TTCGTCCACCGATGCTCTTTCGTGTTGATCGGTTGCACGCCGTAAACGAC
AACAGACAGGTGACAGCTCTCTACCGCGACGGCAACTTGGAGGAAGTCTG
CCGCAGTTTGGGGTTCGGGGCCCGAAACATTGCATAAAAAAAAAACGGCA
CAGGCGATACAGAGTAGTAACTAAGCAGGTGCCCCGTCCTTCGGGACGAA
CGATTTCCCTCCTCCCTAGAGGGTCTCTGCCCAACGTGCCAAGATGGGCG
ACCCGGCGAGCGCGCAGAAGAGAGGCCTGGAGGCGCTGGAGAAGGCGAGG
CCGCTGGACAAGGCCGGCAGGACCAAGGAAGCGGCCGTGCTGTACAAGGT
GCGCTTGTGTGTGCCTGTGTGTACGTCCGTAGACGACGTACAGCAGCGTG
TCATGAGGATGTGGTTTACTCTTTGGCGGGCGCACAACCTTGGGGTGGGT
GGTGGGTGGGTGGGTGGGTGGTTGGGTTCGCATGATCGGCATGTTCCAGG
CAGTTGTCGGTGGATGATCCGGAGATCGGATGTACTTCTTAACACGTAGC
ACGGCGTCCTCGAGTCTTTTGGCAGACGCCATCCGCTTGCATTCTACACA
ATCTACGTGCCTGGATCAGAAAAACACCGCTCTCCCGGCCCCGGCGCCGA
TTTTTTTCCCAACCCCAACCGCAACCCCAACCCGCGCCCCATCTTCTCGT
CCGTCTCTCCCCTCCCCCCCCCCCCTCTCTCTCTCTCTCTCTCTCCCTCT
CCCGCTTCTCGCCCGATCAGGAACACATCGCGTGCTTCCAGGTGGCCCTG
CGAGCGCCGGATCTGTCCCCGGCCATGCGAAACATACTCTCGGAGAGTGC
GCGGGAGTGGCAGAAGCGAGTCACAGAGATAGAGTCGCAGCAGCAGCAGC
AGGCGGGCGCGGGGGGGGCGGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10898:2131..3752+

>mRNA_S-firma_F_contig10898.1190.1 ID=mRNA_S-firma_F_contig10898.1190.1|Name=mRNA_S-firma_F_contig10898.1190.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=888bp|location=Sequence derived from alignment at S-firma_F_contig10898:2131..3752+ (Sphaerotrichia firma ET2_F female)
TTGCCGCACACCCGCTCTCGACGTGGCTGGTATTTAGAGTTGCCGCACAC
CCGCTCTCGACGTGGCTGGTATTTAGAGACAGGTGACAGCTCTCTACCGC
GACGGCAACTTGGAGGAAGTCTGCCGCAGTTTGGGGTTCGGGGCCCGAAA
CATTGCATAAAAAAAAAACGGCACAGGCGATACAGAGTAGTAACTAAGCA
GGTGCCCCGTCCTTCGGGACGAACGATTTCCCTCCTCCCTAGAGGGTCTC
TGCCCAACGTGCCAAGATGGGCGACCCGGCGAGCGCGCAGAAGAGAGGCC
TGGAGGCGCTGGAGAAGGCGAGGCCGCTGGACAAGGCCGGCAGGACCAAG
GAAGCGGCCGTGCTGTACAAGACAGGTGACAGCTCTCTACCGCGACGGCA
ACTTGGAGGAAGTCTGCCGCAGTTTGGGGTTCGGGGCCCGAAACATTGCA
TAAAAAAAAAACGGCACAGGCGATACAGAGTAGTAACTAAGCAGGTGCCC
CGTCCTTCGGGACGAACGATTTCCCTCCTCCCTAGAGGGTCTCTGCCCAA
CGTGCCAAGATGGGCGACCCGGCGAGCGCGCAGAAGAGAGGCCTGGAGGC
GCTGGAGAAGGCGAGGCCGCTGGACAAGGCCGGCAGGACCAAGGAAGCGG
CCGTGCTGTACAAGGAACACATCGCGTGCTTCCAGGTGGCCCTGCGAGCG
CCGGATCTGTCCCCGGCCATGCGAAACATACTCTCGGAGAGTGCGCGGGA
GTGGCAGAAGCGAGTCACAGAGATAGGAACACATCGCGTGCTTCCAGGTG
GCCCTGCGAGCGCCGGATCTGTCCCCGGCCATGCGAAACATACTCTCGGA
GAGTGCGCGGGAGTGGCAGAAGCGAGTCACAGAGATAG
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