mRNA_S-firma_F_contig10897.1189.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10897.1189.1
Unique NamemRNA_S-firma_F_contig10897.1189.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10897.1189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10897contigS-firma_F_contig10897:2602..3339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size370
Cds size369
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10897.1189.1prot_S-firma_F_contig10897.1189.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10897 2603..3339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.9623482-CDS-S-firma_F_contig10897:2602..28421622815632.9623482-CDS-S-firma_F_contig10897:2602..2842Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 2603..2842 -
1696949467.584814-CDS-S-firma_F_contig10897:2602..28421696949467.584814-CDS-S-firma_F_contig10897:2602..2842Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 2603..2842 -
1622815632.9767392-CDS-S-firma_F_contig10897:3022..31141622815632.9767392-CDS-S-firma_F_contig10897:3022..3114Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 3023..3114 -
1696949467.5950015-CDS-S-firma_F_contig10897:3022..31141696949467.5950015-CDS-S-firma_F_contig10897:3022..3114Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 3023..3114 -
1622815632.9934506-CDS-S-firma_F_contig10897:3302..33391622815632.9934506-CDS-S-firma_F_contig10897:3302..3339Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 3303..3339 -
1696949467.6058211-CDS-S-firma_F_contig10897:3302..33391696949467.6058211-CDS-S-firma_F_contig10897:3302..3339Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 3303..3339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10897.1189.1

>prot_S-firma_F_contig10897.1189.1 ID=prot_S-firma_F_contig10897.1189.1|Name=mRNA_S-firma_F_contig10897.1189.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=123bp
LLFILASLIVFAVLTAGVYDLEESSSITQLWAISGTRGEDERAFFESAFS
GATRNEALMAVHPTNVLTADSFNEVIAGLSLLLVETEGTTTAPAGSVFLD
STDSSGAAMRLTQKDMCSAPTVP
back to top

mRNA from alignment at S-firma_F_contig10897:2602..3339-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10897.1189.1 ID=mRNA_S-firma_F_contig10897.1189.1|Name=mRNA_S-firma_F_contig10897.1189.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=738bp|location=Sequence derived from alignment at S-firma_F_contig10897:2602..3339- (Sphaerotrichia firma ET2_F female)
CTCCTCTTCATCCTCGCCTCCCTCATTGTCTTCGCCGGTAAGTCCACCCT
CCCCAATTCCCTCGATCCTCCGCTGACACCTGCGTTCACGTTTTTACCGG
CCCCCACGTCGGTGGATGTTTCACTCGCACACACTCACGTCCACACGTTG
CACACCCTCCCTGCCGCACCCCGGGGCCCCAACCGACCCCTCCCCACGTT
TCATTCCTCACTTTACACCGCACAGTCCTCACCGCCGGCGTTTACGACCT
TGAGGAGTCCAGCTCCATCACTCAGCTGTGGGCCATTTCAGGCACCCGTG
GCGAGGATGAGCGCGCGGTGAGTGTGTGGACTTGTGGTGGCTGCCCACGT
GGCAACTCTGATGACTGTGTGGGCTGTACGTATTTGTGTGTGTGTGTGTG
TGTGTGTTTTTGTTATGTGTGTGTCATGTGCTTTGTGTTTTTTGTTGTGT
GTGTGTTTCCGCACTTGCACTTGTTCACCGCCCCTGCTGCCTTCCAGTTT
TTTGAGTCGGCGTTTAGCGGCGCCACACGGAACGAAGCCCTGATGGCGGT
TCACCCCACCAACGTCCTCACCGCGGACAGCTTCAATGAGGTCATTGCCG
GCCTGTCCTTGCTGCTGGTGGAGACGGAGGGCACCACCACCGCTCCCGCC
GGCTCCGTTTTCCTTGACTCCACCGACTCCTCCGGCGCCGCCATGCGCCT
GACCCAAAAGGACATGTGCAGCGCGCCCACGGTACCCG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10897:2602..3339-

>mRNA_S-firma_F_contig10897.1189.1 ID=mRNA_S-firma_F_contig10897.1189.1|Name=mRNA_S-firma_F_contig10897.1189.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=738bp|location=Sequence derived from alignment at S-firma_F_contig10897:2602..3339- (Sphaerotrichia firma ET2_F female)
CTCCTCTTCATCCTCGCCTCCCTCATTGTCTTCGCCGCTCCTCTTCATCC
TCGCCTCCCTCATTGTCTTCGCCGTCCTCACCGCCGGCGTTTACGACCTT
GAGGAGTCCAGCTCCATCACTCAGCTGTGGGCCATTTCAGGCACCCGTGG
CGAGGATGAGCGCGCGTCCTCACCGCCGGCGTTTACGACCTTGAGGAGTC
CAGCTCCATCACTCAGCTGTGGGCCATTTCAGGCACCCGTGGCGAGGATG
AGCGCGCGTTTTTTGAGTCGGCGTTTAGCGGCGCCACACGGAACGAAGCC
CTGATGGCGGTTCACCCCACCAACGTCCTCACCGCGGACAGCTTCAATGA
GGTCATTGCCGGCCTGTCCTTGCTGCTGGTGGAGACGGAGGGCACCACCA
CCGCTCCCGCCGGCTCCGTTTTCCTTGACTCCACCGACTCCTCCGGCGCC
GCCATGCGCCTGACCCAAAAGGACATGTGCAGCGCGCCCACGGTACCCTT
TTTTGAGTCGGCGTTTAGCGGCGCCACACGGAACGAAGCCCTGATGGCGG
TTCACCCCACCAACGTCCTCACCGCGGACAGCTTCAATGAGGTCATTGCC
GGCCTGTCCTTGCTGCTGGTGGAGACGGAGGGCACCACCACCGCTCCCGC
CGGCTCCGTTTTCCTTGACTCCACCGACTCCTCCGGCGCCGCCATGCGCC
TGACCCAAAAGGACATGTGCAGCGCGCCCACGGTACCC
back to top