mRNA_S-firma_F_contig10897.1188.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10897.1188.1
Unique NamemRNA_S-firma_F_contig10897.1188.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: A0A7S0L2J5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L2J5_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 3.090e-19
Identity = 48/141 (34.04%), Postives = 88/141 (62.41%), Query Frame = 1
Query:    1 VSDSTELDGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFHI--IQERTLTAHMRKTWELAGPSILLTSLSNFTAFIITSIT 417
            + D+++ + + +  GY+++I++   A   + C +S+         LGL G+ V+ALST+A FG+  +F   + PL++N++PFL+LG+G+DD++VL+ T  +  +        M +T  +AGPS+ LTSL+N  AF + ++T
Sbjct:  253 IKDASKPEAILVITGYLVLIIYTALALCRFPCVYSRAG-------LGLMGIFVVALSTVAGFGLTAFFE-KLNPLSTNLVPFLSLGIGVDDMYVLIQTLVLQAVDSSDPEKRMEETMAVAGPSVFLTSLTNTCAFFVAALT 385          
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: A7RK33_NEMVE (Predicted protein (Fragment) n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RK33_NEMVE)

HSP 1 Score: 89.7 bits (221), Expect = 3.750e-18
Identity = 49/136 (36.03%), Postives = 80/136 (58.82%), Query Frame = 1
Query:    7 DSTELDGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFHIIQERTLTAHMRKTWELAGPSILLTSLSNFTAFIITSI 414
            D ++   V LA+GYIIM+++  W+   W         + SH  LG+AGV ++ LS +A  G+  + GI     ++ +LPFLALGLG+DD+F++ HT+  + +   +  +      AG S+LLTS +N  AF++ +I
Sbjct:  381 DFSKSSTVQLAIGYIIMVLYAGWSLKRWTNG------VQSHGGLGVAGVILVTLSVVAGMGLCSFCGIAFNAASTQVLPFLALGLGVDDMFLIAHTYAAMSDIHPSDQVGYALGSAGVSVLLTSFNNMVAFLMAAI 510          
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: A0A7S1C5K8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5K8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.420e-18
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   34 LALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFHIIQER--------TLTAHMRKTWELAGPSILLTSLSNFTAFI 402
            +  GY +MIV+V+ A GN           +   + G+AG+A +A++T++SFG     G+     ++ +LPFLALGLG+DD+FVL HT   +++             H+ +T E AGPS+ LTSL+N  AF+
Sbjct:  343 IVAGYGVMIVYVLLALGN-----------EGLALTGMAGLATVAVATLSSFGFTSLLGVTFNAASTQVLPFLALGLGVDDMFVLSHTLSNVRDADGGERGGAVAQTHISRTLEAAGPSVTLTSLANLCAFL 462          
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: A0A7M7INC9_APIME (NPC intracellular cholesterol transporter 1 homolog 1b n=6 Tax=Apis TaxID=7459 RepID=A0A7M7INC9_APIME)

HSP 1 Score: 86.3 bits (212), Expect = 6.150e-17
Identity = 46/135 (34.07%), Postives = 77/135 (57.04%), Query Frame = 1
Query:   10 STELDGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFHI---IQERTLTAHMRKTWELAGPSILLTSLSNFTAFII 405
            S+  + +T+ + Y+IM V+V  A    KC   KE   +S I+L + GV ++  S   S G+ G+ G+  T L   ++PFL L +G+D++F+L+HT+       + T+  H+ +     GPS+LLTS+S    F+I
Sbjct:  601 SSRAEAITVVISYVIMFVYVSLALSEIKCSV-KEYFANSKIMLSVGGVVIVIASVACSLGIFGYVGVPTTLLTIEVIPFLVLAVGVDNIFILIHTYEKNPKCDDETIHEHVGRILGEVGPSMLLTSISECLCFLI 734          
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: A0A6H5IJ76_9HYME (SSD domain-containing protein n=5 Tax=Trichogramma TaxID=7490 RepID=A0A6H5IJ76_9HYME)

HSP 1 Score: 85.9 bits (211), Expect = 8.340e-17
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 1
Query:   22 DGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFHIIQER---TLTAHMRKTWELAGPSILLTSLSNFTAF 399
            D +T+ + Y+IM V++  + G WK    K  L+DS I LGL GV ++  S I S G+ G+ G+  T +   ++PFL L +G+D++F+L+ T      R   ++  H+ +T    GPS+LLTS+S    F
Sbjct:  497 DVITILISYLIMFVYIAISLGQWKS--FKTFLIDSKITLGLGGVLIVLASVICSVGIFGYIGLPATLIIIEVIPFLVLAVGVDNIFILVQTHQREGRRPDESIAEHIGRTLGQVGPSMLLTSVSESCCF 623          
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: A9V563_MONBE (Patched-like protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V563_MONBE)

HSP 1 Score: 85.9 bits (211), Expect = 8.490e-17
Identity = 50/135 (37.04%), Postives = 81/135 (60.00%), Query Frame = 1
Query:    1 VSDSTELDGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLL--HTFHIIQERTLTAHMRKTWELAGPSILLTSLSNFTAF 399
            V ++++L+   L  GY+ M+ +V   F N++      + + SH  + +  V VIA ST A+ G+  WFGI  TP+++N++PF+ALG+G+DD FV+L  +T  +    T+   M +T   AGPS+  TS+ N  AF
Sbjct:  864 VEEASKLETGLLVGGYLAMLAYVFLQFTNFR------NSIYSHGWIAVGSVIVIAFSTGAALGLTAWFGIPFTPISNNVIPFIALGIGIDDAFVVLRAYTREVALGGTVQDVMGRTMADAGPSVFFTSVVNAVAF 992          
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: A0A7R9JJ10_TIMCA ((California timema) hypothetical protein n=1 Tax=Timema californicum TaxID=61474 RepID=A0A7R9JJ10_TIMCA)

HSP 1 Score: 82.8 bits (203), Expect = 8.940e-17
Identity = 42/136 (30.88%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    1 VSDSTELDGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFHIIQER---TLTAHMRKTWELAGPSILLTSLSNFTAF 399
            +   ++ +  T+ + Y++M V++  A G  +    +  +LDS I LG+ G+ ++ ++ +++ G+ G+ G+V T L   ++PFL L +G+D++F+L+      + R   T   H+ +T    GPS+LLTSLS  T F
Sbjct:   81 IDRESKAEVATVVISYVVMFVYISLALGRVRSL--RTLMLDSKITLGVGGIVIVLMAVVSAIGIFGYCGVVTTLLTIEVIPFLVLAVGVDNIFILVQAHQRDERRKGETHAQHIGRTLSKVGPSMLLTSLSESTCF 214          
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: UPI001432FC71 (NPC intracellular cholesterol transporter 1 isoform X2 n=1 Tax=Drosophila busckii TaxID=30019 RepID=UPI001432FC71)

HSP 1 Score: 85.1 bits (209), Expect = 1.530e-16
Identity = 47/137 (34.31%), Postives = 83/137 (60.58%), Query Frame = 1
Query:   13 TELDGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFHIIQERT---LTAHMRKTWELAGPSILLTSLSNFTAFIITSI 414
            ++ D +T+ + Y+IM +++  + GN +    K SL+DS I LG+ GV ++  S I+S G+ G+ G+  T +   ++PFL L +G+D++F+L+ TF   Q +T   +  H+ +     GPS+LLTS+S    F + S+
Sbjct:  625 SQSDVLTILVSYLIMFLYIAISLGNVQEL--KRSLIDSKITLGIGGVIIVLASVISSVGIFGYIGVPATLIIVEVIPFLVLAVGVDNIFILVQTFQRDQRKTNETIEEHVGRVLGRVGPSMLLTSVSESCCFFLGSL 759          
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: UPI001432C9C2 (NPC intracellular cholesterol transporter 1 isoform X1 n=1 Tax=Drosophila busckii TaxID=30019 RepID=UPI001432C9C2)

HSP 1 Score: 85.1 bits (209), Expect = 1.560e-16
Identity = 47/137 (34.31%), Postives = 83/137 (60.58%), Query Frame = 1
Query:   13 TELDGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFHIIQERT---LTAHMRKTWELAGPSILLTSLSNFTAFIITSI 414
            ++ D +T+ + Y+IM +++  + GN +    K SL+DS I LG+ GV ++  S I+S G+ G+ G+  T +   ++PFL L +G+D++F+L+ TF   Q +T   +  H+ +     GPS+LLTS+S    F + S+
Sbjct:  625 SQSDVLTILVSYLIMFLYIAISLGNVQEL--KRSLIDSKITLGIGGVIIVLASVISSVGIFGYIGVPATLIIVEVIPFLVLAVGVDNIFILVQTFQRDQRKTNETIEEHVGRVLGRVGPSMLLTSVSESCCFFLGSL 759          
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: A0A5J4YRZ0_PORPP (Protein patched-like 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRZ0_PORPP)

HSP 1 Score: 84.7 bits (208), Expect = 2.120e-16
Identity = 49/145 (33.79%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    4 SDSTELDGVTLALG-----YIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFV----LLHTFHIIQERTLTAHMRKTWELAGPSILLTSLSNFTAFIITS 411
            SD    +G  + +G     Y +M V+   +F N+  P    +++ S +V+   G+  +AL+T+  FGV  W  + I+P+  N+ PFL+LG+GLDD+FV    L+ + ++  + T    MR     AGPS++LT+ +N +AF I S
Sbjct:  521 SDDVAEEGNRVPVGLIVASYAVMTVYTSLSFLNYSRPVGWRNVVYSRLVVAWCGLVSVALATLCGFGVLSWANVAISPVGINLAPFLSLGVGLDDIFVVAGGLIESGNL--QNTPEERMRAVMRAAGPSVMLTTFANMSAFFIAS 663          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0L2J5_9EUKA3.090e-1934.04Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A7RK33_NEMVE3.750e-1836.03Predicted protein (Fragment) n=3 Tax=Nematostella ... [more]
A0A7S1C5K8_9STRA8.420e-1837.40Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7M7INC9_APIME6.150e-1734.07NPC intracellular cholesterol transporter 1 homolo... [more]
A0A6H5IJ76_9HYME8.340e-1736.43SSD domain-containing protein n=5 Tax=Trichogramma... [more]
A9V563_MONBE8.490e-1737.04Patched-like protein n=1 Tax=Monosiga brevicollis ... [more]
A0A7R9JJ10_TIMCA8.940e-1730.88(California timema) hypothetical protein n=1 Tax=T... [more]
UPI001432FC711.530e-1634.31NPC intracellular cholesterol transporter 1 isofor... [more]
UPI001432C9C21.560e-1634.31NPC intracellular cholesterol transporter 1 isofor... [more]
A0A5J4YRZ0_PORPP2.120e-1633.79Protein patched-like 1 n=1 Tax=Porphyridium purpur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10897contigS-firma_F_contig10897:937..1569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog45351.EDO48180
Preferred namePTCH1
PFAMsPatched
Max annot lvl33208|Metazoa
KEGG koko:K06225,ko:K11101
KEGG Pathwayko04024,ko04340,ko04341,ko04360,ko05200,ko05205,ko05217,map04024,map04340,map04341,map04360,map05200,map05205,map05217
KEGG ModuleM00678
GOsGO:0000003,GO:0000122,GO:0000578,GO:0000902,GO:0000904,GO:0001101,GO:0001503,GO:0001649,GO:0001654,GO:0001655,GO:0001656,GO:0001657,GO:0001658,GO:0001664,GO:0001701,GO:0001708,GO:0001709,GO:0001746,GO:0001763,GO:0001822,GO:0001823,GO:0001838,GO:0001840,GO:0001841,GO:0001843,GO:0002009,GO:0002064,GO:0002065,GO:0002066,GO:0002165,GO:0003002,GO:0003006,GO:0003007,GO:0003674,GO:0004888,GO:0005102,GO:0005113,GO:0005119,GO:0005488,GO:0005496,GO:0005515,GO:0005539,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0005887,GO:0005901,GO:0005929,GO:0006355,GO:0006357,GO:0006508,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006898,GO:0006928,GO:0006935,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007389,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0007420,GO:0007422,GO:0007423,GO:0007444,GO:0007445,GO:0007447,GO:0007448,GO:0007455,GO:0007472,GO:0007476,GO:0007507,GO:0007548,GO:0007552,GO:0007560,GO:0008104,GO:0008150,GO:0008152,GO:0008158,GO:0008201,GO:0008270,GO:0008283,GO:0008285,GO:0008289,GO:0008406,GO:0008544,GO:0008589,GO:0009605,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009798,GO:0009880,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009913,GO:0009952,GO:0009953,GO:0009954,GO:0009957,GO:0009966,GO:0009968,GO:0009987,GO:0010002,GO:0010033,GO:0010035,GO:0010157,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010632,GO:0010646,GO:0010648,GO:0010874,GO:0010875,GO:0010941,GO:0012506,GO:0014020,GO:0014069,GO:0014070,GO:0015485,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016311,GO:0016324,GO:0016331,GO:0016485,GO:0017145,GO:0018996,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021532,GO:0021904,GO:0021915,GO:0021953,GO:0021997,GO:0022008,GO:0022412,GO:0022414,GO:0022612,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030139,GO:0030154,GO:0030182,GO:0030228,GO:0030278,GO:0030279,GO:0030326,GO:0030332,GO:0030334,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030496,GO:0030659,GO:0030666,GO:0030707,GO:0030855,GO:0030856,GO:0030858,GO:0030879,GO:0031090,GO:0031175,GO:0031224,GO:0031226,GO:0031253,GO:0031290,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031410,GO:0031982,GO:0032279,GO:0032368,GO:0032370,GO:0032371,GO:0032373,GO:0032374,GO:0032376,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032934,GO:0032989,GO:0032990,GO:0033036,GO:0033267,GO:0033500,GO:0033993,GO:0034613,GO:0035051,GO:0035107,GO:0035108,GO:0035113,GO:0035114,GO:0035120,GO:0035137,GO:0035148,GO:0035161,GO:0035214,GO:0035215,GO:0035220,GO:0035222,GO:0035225,GO:0035239,GO:0035295,GO:0036094,GO:0036314,GO:0036315,GO:0036477,GO:0038023,GO:0038024,GO:0040008,GO:0040011,GO:0040012,GO:0040014,GO:0040015,GO:0042078,GO:0042127,GO:0042221,GO:0042303,GO:0042330,GO:0042592,GO:0042593,GO:0042633,GO:0042981,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043067,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043178,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043433,GO:0043588,GO:0043616,GO:0044092,GO:0044237,GO:0044238,GO:0044292,GO:0044294,GO:0044295,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044853,GO:0044877,GO:0045121,GO:0045137,GO:0045165,GO:0045177,GO:0045202,GO:0045595,GO:0045596,GO:0045597,GO:0045604,GO:0045606,GO:0045667,GO:0045668,GO:0045682,GO:0045684,GO:0045879,GO:0045892,GO:0045893,GO:0045926,GO:0045934,GO:0045935,GO:0046872,GO:0046914,GO:0048099,GO:0048100,GO:0048103,GO:0048468,GO:0048471,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048568,GO:0048569,GO:0048583,GO:0048585,GO:0048592,GO:0048598,GO:0048608,GO:0048609,GO:0048634,GO:0048635,GO:0048638,GO:0048640,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048737,GO:0048754,GO:0048812,GO:0048856,GO:0048858,GO:0048863,GO:0048869,GO:0048878,GO:0050673,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051090,GO:0051093,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0051254,GO:0051270,GO:0051301,GO:0051302,GO:0051604,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0051782,GO:0055034,GO:0055088,GO:0060037,GO:0060089,GO:0060170,GO:0060173,GO:0060255,GO:0060322,GO:0060429,GO:0060443,GO:0060562,GO:0060603,GO:0060606,GO:0060644,GO:0060675,GO:0060831,GO:0060896,GO:0060993,GO:0061005,GO:0061053,GO:0061138,GO:0061180,GO:0061326,GO:0061333,GO:0061458,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070723,GO:0070727,GO:0070887,GO:0071310,GO:0071396,GO:0071397,GO:0071407,GO:0071679,GO:0071704,GO:0071840,GO:0071944,GO:0072001,GO:0072006,GO:0072009,GO:0072028,GO:0072073,GO:0072078,GO:0072080,GO:0072088,GO:0072111,GO:0072163,GO:0072164,GO:0072171,GO:0072175,GO:0072203,GO:0072359,GO:0072657,GO:0072659,GO:0080090,GO:0090596,GO:0097108,GO:0097159,GO:0097305,GO:0097306,GO:0097367,GO:0097447,GO:0097458,GO:0097485,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098794,GO:0098805,GO:0098857,GO:0098984,GO:0099572,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0150034,GO:1901564,GO:1901681,GO:1901700,GO:1901701,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905952,GO:1905954,GO:1990778,GO:2000026,GO:2000112,GO:2000113,GO:2000145,GO:2000274,GO:2001141
Evalue6.15e-19
EggNOG OGsKOG1935@1|root,KOG1935@2759|Eukaryota,38BI2@33154|Opisthokonta,3BA9R@33208|Metazoa
Descriptionhedgehog receptor activity
COG categoryT
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Exons5
Model size419
Cds size417
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10897.1188.1prot_S-firma_F_contig10897.1188.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10897 939..1569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.0847695-CDS-S-firma_F_contig10897:938..10531622815633.0847695-CDS-S-firma_F_contig10897:938..1053Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 939..1053 -
1696949467.659254-CDS-S-firma_F_contig10897:938..10531696949467.659254-CDS-S-firma_F_contig10897:938..1053Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 939..1053 -
1622815633.0973363-CDS-S-firma_F_contig10897:1102..11421622815633.0973363-CDS-S-firma_F_contig10897:1102..1142Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 1103..1142 -
1696949467.681487-CDS-S-firma_F_contig10897:1102..11421696949467.681487-CDS-S-firma_F_contig10897:1102..1142Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 1103..1142 -
1622815633.10876-CDS-S-firma_F_contig10897:1195..12441622815633.10876-CDS-S-firma_F_contig10897:1195..1244Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 1196..1244 -
1696949467.6931257-CDS-S-firma_F_contig10897:1195..12441696949467.6931257-CDS-S-firma_F_contig10897:1195..1244Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 1196..1244 -
1622815633.1190236-CDS-S-firma_F_contig10897:1301..14681622815633.1190236-CDS-S-firma_F_contig10897:1301..1468Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 1302..1468 -
1696949467.7038522-CDS-S-firma_F_contig10897:1301..14681696949467.7038522-CDS-S-firma_F_contig10897:1301..1468Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 1302..1468 -
1622815633.130317-CDS-S-firma_F_contig10897:1523..15691622815633.130317-CDS-S-firma_F_contig10897:1523..1569Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 1524..1569 -
1696949467.7144177-CDS-S-firma_F_contig10897:1523..15691696949467.7144177-CDS-S-firma_F_contig10897:1523..1569Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 1524..1569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10897.1188.1

>prot_S-firma_F_contig10897.1188.1 ID=prot_S-firma_F_contig10897.1188.1|Name=mRNA_S-firma_F_contig10897.1188.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=139bp
VSDSTELDGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAG
VAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFH
IIQERTLTAHMRKTWELAGPSILLTSLSNFTAFIITSIT
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mRNA from alignment at S-firma_F_contig10897:937..1569-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10897.1188.1 ID=mRNA_S-firma_F_contig10897.1188.1|Name=mRNA_S-firma_F_contig10897.1188.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=633bp|location=Sequence derived from alignment at S-firma_F_contig10897:937..1569- (Sphaerotrichia firma ET2_F female)
GTGTCTGACTCCACTGAGCTCGACGGCGTCACCCTGGCCCTTGGCTGTGC GTGTTGTTGCGCTGGCTGTGATTGTTTGGCTTGGTTCACCCCCCCCTTCA GACATCATCATGATTGTGTTTGTCATTTGGGCGTTTGGCAACTGGAAGTG CCCGTTCTCCAAGGAGTCCCTGTTGGACTCCCACATTGTGCTTGGGCTTG CCGGCGTCGCCGTGATTGCCTTGTCCACGATTGCCAGCTTTGGCGTTGCG GGCTGGTTTGGCATCGTCGTACGTTTCCCTGTACGTGTGTTGCGGTATGG TGTTTCTTGAGCCCCTTCCCCACAGATTACCCCGCTGAACTCCAACATCC TGCCCTTCCTTGCCCTGGGTTTGGGTGCGTCACGTCTTTTTTTCTGGCAC CACCCCCTGCGCTCACCACCTCCCCAGGCCTGGATGACTTGTTTGTGCTG CTGCACACGTTCCACATGTGCGCCCCCTTCCTCCCCTCCTTCTCCTCCTT CACCCCCACCCAACAGCATCCAAGAGCGCACCCTGACGGCCCACATGCGC AAGACCTGGGAGTTGGCCGGCCCCTCCATCTTGCTGACCTCGCTGTCCAA CTTTACGGCGTTCATCATCACGTCTATCACGCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10897:937..1569-

>mRNA_S-firma_F_contig10897.1188.1 ID=mRNA_S-firma_F_contig10897.1188.1|Name=mRNA_S-firma_F_contig10897.1188.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=834bp|location=Sequence derived from alignment at S-firma_F_contig10897:937..1569- (Sphaerotrichia firma ET2_F female)
GTGTCTGACTCCACTGAGCTCGACGGCGTCACCCTGGCCCTTGGCTGTGT
CTGACTCCACTGAGCTCGACGGCGTCACCCTGGCCCTTGGCTACATCATC
ATGATTGTGTTTGTCATTTGGGCGTTTGGCAACTGGAAGTGCCCGTTCTC
CAAGGAGTCCCTGTTGGACTCCCACATTGTGCTTGGGCTTGCCGGCGTCG
CCGTGATTGCCTTGTCCACGATTGCCAGCTTTGGCGTTGCGGGCTGGTTT
GGCATCGTCACATCATCATGATTGTGTTTGTCATTTGGGCGTTTGGCAAC
TGGAAGTGCCCGTTCTCCAAGGAGTCCCTGTTGGACTCCCACATTGTGCT
TGGGCTTGCCGGCGTCGCCGTGATTGCCTTGTCCACGATTGCCAGCTTTG
GCGTTGCGGGCTGGTTTGGCATCGTCATTACCCCGCTGAACTCCAACATC
CTGCCCTTCCTTGCCCTGGGTTTGGATTACCCCGCTGAACTCCAACATCC
TGCCCTTCCTTGCCCTGGGTTTGGGCCTGGATGACTTGTTTGTGCTGCTG
CACACGTTCCACATGCCTGGATGACTTGTTTGTGCTGCTGCACACGTTCC
ACATCATCCAAGAGCGCACCCTGACGGCCCACATGCGCAAGACCTGGGAG
TTGGCCGGCCCCTCCATCTTGCTGACCTCGCTGTCCAACTTTACGGCGTT
CATCATCACGTCTATCACGCATCCAAGAGCGCACCCTGACGGCCCACATG
CGCAAGACCTGGGAGTTGGCCGGCCCCTCCATCTTGCTGACCTCGCTGTC
CAACTTTACGGCGTTCATCATCACGTCTATCACG
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