mRNA_S-firma_F_contig10897.1188.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: A0A7S0L2J5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L2J5_9EUKA) HSP 1 Score: 92.8 bits (229), Expect = 3.090e-19 Identity = 48/141 (34.04%), Postives = 88/141 (62.41%), Query Frame = 1
Query: 1 VSDSTELDGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFHI--IQERTLTAHMRKTWELAGPSILLTSLSNFTAFIITSIT 417
+ D+++ + + + GY+++I++ A + C +S+ LGL G+ V+ALST+A FG+ +F + PL++N++PFL+LG+G+DD++VL+ T + + M +T +AGPS+ LTSL+N AF + ++T
Sbjct: 253 IKDASKPEAILVITGYLVLIIYTALALCRFPCVYSRAG-------LGLMGIFVVALSTVAGFGLTAFFE-KLNPLSTNLVPFLSLGIGVDDMYVLIQTLVLQAVDSSDPEKRMEETMAVAGPSVFLTSLTNTCAFFVAALT 385
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: A7RK33_NEMVE (Predicted protein (Fragment) n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RK33_NEMVE) HSP 1 Score: 89.7 bits (221), Expect = 3.750e-18 Identity = 49/136 (36.03%), Postives = 80/136 (58.82%), Query Frame = 1
Query: 7 DSTELDGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFHIIQERTLTAHMRKTWELAGPSILLTSLSNFTAFIITSI 414
D ++ V LA+GYIIM+++ W+ W + SH LG+AGV ++ LS +A G+ + GI ++ +LPFLALGLG+DD+F++ HT+ + + + + AG S+LLTS +N AF++ +I
Sbjct: 381 DFSKSSTVQLAIGYIIMVLYAGWSLKRWTNG------VQSHGGLGVAGVILVTLSVVAGMGLCSFCGIAFNAASTQVLPFLALGLGVDDMFLIAHTYAAMSDIHPSDQVGYALGSAGVSVLLTSFNNMVAFLMAAI 510
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: A0A7S1C5K8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5K8_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 8.420e-18 Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 1
Query: 34 LALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFHIIQER--------TLTAHMRKTWELAGPSILLTSLSNFTAFI 402
+ GY +MIV+V+ A GN + + G+AG+A +A++T++SFG G+ ++ +LPFLALGLG+DD+FVL HT +++ H+ +T E AGPS+ LTSL+N AF+
Sbjct: 343 IVAGYGVMIVYVLLALGN-----------EGLALTGMAGLATVAVATLSSFGFTSLLGVTFNAASTQVLPFLALGLGVDDMFVLSHTLSNVRDADGGERGGAVAQTHISRTLEAAGPSVTLTSLANLCAFL 462
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: A0A7M7INC9_APIME (NPC intracellular cholesterol transporter 1 homolog 1b n=6 Tax=Apis TaxID=7459 RepID=A0A7M7INC9_APIME) HSP 1 Score: 86.3 bits (212), Expect = 6.150e-17 Identity = 46/135 (34.07%), Postives = 77/135 (57.04%), Query Frame = 1
Query: 10 STELDGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFHI---IQERTLTAHMRKTWELAGPSILLTSLSNFTAFII 405
S+ + +T+ + Y+IM V+V A KC KE +S I+L + GV ++ S S G+ G+ G+ T L ++PFL L +G+D++F+L+HT+ + T+ H+ + GPS+LLTS+S F+I
Sbjct: 601 SSRAEAITVVISYVIMFVYVSLALSEIKCSV-KEYFANSKIMLSVGGVVIVIASVACSLGIFGYVGVPTTLLTIEVIPFLVLAVGVDNIFILIHTYEKNPKCDDETIHEHVGRILGEVGPSMLLTSISECLCFLI 734
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: A0A6H5IJ76_9HYME (SSD domain-containing protein n=5 Tax=Trichogramma TaxID=7490 RepID=A0A6H5IJ76_9HYME) HSP 1 Score: 85.9 bits (211), Expect = 8.340e-17 Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 1
Query: 22 DGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFHIIQER---TLTAHMRKTWELAGPSILLTSLSNFTAF 399
D +T+ + Y+IM V++ + G WK K L+DS I LGL GV ++ S I S G+ G+ G+ T + ++PFL L +G+D++F+L+ T R ++ H+ +T GPS+LLTS+S F
Sbjct: 497 DVITILISYLIMFVYIAISLGQWKS--FKTFLIDSKITLGLGGVLIVLASVICSVGIFGYIGLPATLIIIEVIPFLVLAVGVDNIFILVQTHQREGRRPDESIAEHIGRTLGQVGPSMLLTSVSESCCF 623
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: A9V563_MONBE (Patched-like protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V563_MONBE) HSP 1 Score: 85.9 bits (211), Expect = 8.490e-17 Identity = 50/135 (37.04%), Postives = 81/135 (60.00%), Query Frame = 1
Query: 1 VSDSTELDGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLL--HTFHIIQERTLTAHMRKTWELAGPSILLTSLSNFTAF 399
V ++++L+ L GY+ M+ +V F N++ + + SH + + V VIA ST A+ G+ WFGI TP+++N++PF+ALG+G+DD FV+L +T + T+ M +T AGPS+ TS+ N AF
Sbjct: 864 VEEASKLETGLLVGGYLAMLAYVFLQFTNFR------NSIYSHGWIAVGSVIVIAFSTGAALGLTAWFGIPFTPISNNVIPFIALGIGIDDAFVVLRAYTREVALGGTVQDVMGRTMADAGPSVFFTSVVNAVAF 992
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: A0A7R9JJ10_TIMCA ((California timema) hypothetical protein n=1 Tax=Timema californicum TaxID=61474 RepID=A0A7R9JJ10_TIMCA) HSP 1 Score: 82.8 bits (203), Expect = 8.940e-17 Identity = 42/136 (30.88%), Postives = 79/136 (58.09%), Query Frame = 1
Query: 1 VSDSTELDGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFHIIQER---TLTAHMRKTWELAGPSILLTSLSNFTAF 399
+ ++ + T+ + Y++M V++ A G + + +LDS I LG+ G+ ++ ++ +++ G+ G+ G+V T L ++PFL L +G+D++F+L+ + R T H+ +T GPS+LLTSLS T F
Sbjct: 81 IDRESKAEVATVVISYVVMFVYISLALGRVRSL--RTLMLDSKITLGVGGIVIVLMAVVSAIGIFGYCGVVTTLLTIEVIPFLVLAVGVDNIFILVQAHQRDERRKGETHAQHIGRTLSKVGPSMLLTSLSESTCF 214
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: UPI001432FC71 (NPC intracellular cholesterol transporter 1 isoform X2 n=1 Tax=Drosophila busckii TaxID=30019 RepID=UPI001432FC71) HSP 1 Score: 85.1 bits (209), Expect = 1.530e-16 Identity = 47/137 (34.31%), Postives = 83/137 (60.58%), Query Frame = 1
Query: 13 TELDGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFHIIQERT---LTAHMRKTWELAGPSILLTSLSNFTAFIITSI 414
++ D +T+ + Y+IM +++ + GN + K SL+DS I LG+ GV ++ S I+S G+ G+ G+ T + ++PFL L +G+D++F+L+ TF Q +T + H+ + GPS+LLTS+S F + S+
Sbjct: 625 SQSDVLTILVSYLIMFLYIAISLGNVQEL--KRSLIDSKITLGIGGVIIVLASVISSVGIFGYIGVPATLIIVEVIPFLVLAVGVDNIFILVQTFQRDQRKTNETIEEHVGRVLGRVGPSMLLTSVSESCCFFLGSL 759
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: UPI001432C9C2 (NPC intracellular cholesterol transporter 1 isoform X1 n=1 Tax=Drosophila busckii TaxID=30019 RepID=UPI001432C9C2) HSP 1 Score: 85.1 bits (209), Expect = 1.560e-16 Identity = 47/137 (34.31%), Postives = 83/137 (60.58%), Query Frame = 1
Query: 13 TELDGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFVLLHTFHIIQERT---LTAHMRKTWELAGPSILLTSLSNFTAFIITSI 414
++ D +T+ + Y+IM +++ + GN + K SL+DS I LG+ GV ++ S I+S G+ G+ G+ T + ++PFL L +G+D++F+L+ TF Q +T + H+ + GPS+LLTS+S F + S+
Sbjct: 625 SQSDVLTILVSYLIMFLYIAISLGNVQEL--KRSLIDSKITLGIGGVIIVLASVISSVGIFGYIGVPATLIIVEVIPFLVLAVGVDNIFILVQTFQRDQRKTNETIEEHVGRVLGRVGPSMLLTSVSESCCFFLGSL 759
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Match: A0A5J4YRZ0_PORPP (Protein patched-like 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRZ0_PORPP) HSP 1 Score: 84.7 bits (208), Expect = 2.120e-16 Identity = 49/145 (33.79%), Postives = 82/145 (56.55%), Query Frame = 1
Query: 4 SDSTELDGVTLALG-----YIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGVAVIALSTIASFGVAGWFGIVITPLNSNILPFLALGLGLDDLFV----LLHTFHIIQERTLTAHMRKTWELAGPSILLTSLSNFTAFIITS 411
SD +G + +G Y +M V+ +F N+ P +++ S +V+ G+ +AL+T+ FGV W + I+P+ N+ PFL+LG+GLDD+FV L+ + ++ + T MR AGPS++LT+ +N +AF I S
Sbjct: 521 SDDVAEEGNRVPVGLIVASYAVMTVYTSLSFLNYSRPVGWRNVVYSRLVVAWCGLVSVALATLCGFGVLSWANVAISPVGINLAPFLSLGVGLDDIFVVAGGLIESGNL--QNTPEERMRAVMRAAGPSVMLTTFANMSAFFIAS 663 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10897.1188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10897.1188.1 >prot_S-firma_F_contig10897.1188.1 ID=prot_S-firma_F_contig10897.1188.1|Name=mRNA_S-firma_F_contig10897.1188.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=139bp VSDSTELDGVTLALGYIIMIVFVIWAFGNWKCPFSKESLLDSHIVLGLAGback to top mRNA from alignment at S-firma_F_contig10897:937..1569- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10897.1188.1 ID=mRNA_S-firma_F_contig10897.1188.1|Name=mRNA_S-firma_F_contig10897.1188.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=633bp|location=Sequence derived from alignment at S-firma_F_contig10897:937..1569- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10897:937..1569- >mRNA_S-firma_F_contig10897.1188.1 ID=mRNA_S-firma_F_contig10897.1188.1|Name=mRNA_S-firma_F_contig10897.1188.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=834bp|location=Sequence derived from alignment at S-firma_F_contig10897:937..1569- (Sphaerotrichia firma ET2_F female)back to top |