mRNA_S-firma_F_contig10892.1185.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10892.1185.1
Unique NamemRNA_S-firma_F_contig10892.1185.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10892.1185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10892contigS-firma_F_contig10892:3427..3849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog8364.ENSXETP00000017348
Preferred nameHMMR
PFAMsHMMR_C,HMMR_N
Max annot lvl33208|Metazoa
KEGG koko:K06267
KEGG Pathwayko04512,map04512
GOsGO:0003674,GO:0005488,GO:0005539,GO:0005540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0006022,GO:0006026,GO:0006027,GO:0006082,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0016020,GO:0016054,GO:0019752,GO:0030203,GO:0030212,GO:0030214,GO:0031406,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0071704,GO:0071944,GO:0097367,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901990,GO:1902749,GO:1903510
Evalue0.000708
EggNOG OGs28I9A@1|root,2QQJM@2759|Eukaryota,39RKZ@33154|Opisthokonta,3BIEX@33208|Metazoa,3D4VR@33213|Bilateria,488XH@7711|Chordata,48X0P@7742|Vertebrata
Descriptionhyaluronic acid binding
COG categoryS
BRITEko00000,ko00001,ko00536,ko04090
Hectar predicted targeting categoryother localisation
Exons1
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.8739922-CDS-S-firma_F_contig10892:3426..38491622815632.8739922-CDS-S-firma_F_contig10892:3426..3849Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10892 3427..3849 +
1696949467.533042-CDS-S-firma_F_contig10892:3426..38491696949467.533042-CDS-S-firma_F_contig10892:3426..3849Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10892 3427..3849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10892.1185.1prot_S-firma_F_contig10892.1185.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10892 3427..3849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10892.1185.1

>prot_S-firma_F_contig10892.1185.1 ID=prot_S-firma_F_contig10892.1185.1|Name=mRNA_S-firma_F_contig10892.1185.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=141bp
AEAAEGTVLELTARLKENEEQRNSLVELVEKIRSKGPIEDLLTAKDRLVE
LERVEGAAHKEAMKMAVEMGKLAGHRNHKQRLNYLSSLKLENTALKDQNS
KLQARLARIKAKRGDAEALDDSITTAMTPVKENRRPAMAL*
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mRNA from alignment at S-firma_F_contig10892:3427..3849+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10892.1185.1 ID=mRNA_S-firma_F_contig10892.1185.1|Name=mRNA_S-firma_F_contig10892.1185.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=423bp|location=Sequence derived from alignment at S-firma_F_contig10892:3427..3849+ (Sphaerotrichia firma ET2_F female)
GCAGAGGCCGCGGAGGGCACTGTGTTGGAGCTGACGGCGCGCCTGAAGGA
GAACGAGGAGCAGCGCAACAGCCTGGTGGAGCTCGTGGAGAAGATCCGGT
CGAAGGGCCCCATTGAGGACTTGCTGACGGCGAAGGACCGCCTGGTGGAG
CTGGAGCGCGTGGAGGGCGCTGCCCACAAGGAAGCCATGAAGATGGCGGT
GGAAATGGGCAAGCTGGCCGGGCACCGCAACCACAAGCAGCGCCTCAACT
ACTTGTCTTCCCTGAAGCTGGAAAACACGGCCCTCAAGGATCAGAACTCC
AAGCTCCAGGCCCGCCTGGCCCGCATCAAGGCCAAGCGTGGCGACGCCGA
GGCCCTGGACGACTCCATCACCACGGCCATGACGCCCGTCAAGGAGAACC
GCCGCCCGGCGATGGCTTTGTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10892:3427..3849+

>mRNA_S-firma_F_contig10892.1185.1 ID=mRNA_S-firma_F_contig10892.1185.1|Name=mRNA_S-firma_F_contig10892.1185.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=846bp|location=Sequence derived from alignment at S-firma_F_contig10892:3427..3849+ (Sphaerotrichia firma ET2_F female)
GCAGAGGCCGCGGAGGGCACTGTGTTGGAGCTGACGGCGCGCCTGAAGGA
GAACGAGGAGCAGCGCAACAGCCTGGTGGAGCTCGTGGAGAAGATCCGGT
CGAAGGGCCCCATTGAGGACTTGCTGACGGCGAAGGACCGCCTGGTGGAG
CTGGAGCGCGTGGAGGGCGCTGCCCACAAGGAAGCCATGAAGATGGCGGT
GGAAATGGGCAAGCTGGCCGGGCACCGCAACCACAAGCAGCGCCTCAACT
ACTTGTCTTCCCTGAAGCTGGAAAACACGGCCCTCAAGGATCAGAACTCC
AAGCTCCAGGCCCGCCTGGCCCGCATCAAGGCCAAGCGTGGCGACGCCGA
GGCCCTGGACGACTCCATCACCACGGCCATGACGCCCGTCAAGGAGAACC
GCCGCCCGGCGATGGCTTTGTGAGCAGAGGCCGCGGAGGGCACTGTGTTG
GAGCTGACGGCGCGCCTGAAGGAGAACGAGGAGCAGCGCAACAGCCTGGT
GGAGCTCGTGGAGAAGATCCGGTCGAAGGGCCCCATTGAGGACTTGCTGA
CGGCGAAGGACCGCCTGGTGGAGCTGGAGCGCGTGGAGGGCGCTGCCCAC
AAGGAAGCCATGAAGATGGCGGTGGAAATGGGCAAGCTGGCCGGGCACCG
CAACCACAAGCAGCGCCTCAACTACTTGTCTTCCCTGAAGCTGGAAAACA
CGGCCCTCAAGGATCAGAACTCCAAGCTCCAGGCCCGCCTGGCCCGCATC
AAGGCCAAGCGTGGCGACGCCGAGGCCCTGGACGACTCCATCACCACGGC
CATGACGCCCGTCAAGGAGAACCGCCGCCCGGCGATGGCTTTGTGA
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