mRNA_S-firma_F_contig10890.1182.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10890.1182.1 vs. uniprot
Match: D7G6A9_ECTSI (Guanylate kinase-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A9_ECTSI) HSP 1 Score: 294 bits (753), Expect = 3.410e-93 Identity = 168/255 (65.88%), Postives = 187/255 (73.33%), Query Frame = 1
Query: 1 MARRGAQAWGTLALAAGAAGWWVELGVQHGCCSLTATQTTSYPGLFVVGAQRYRLLSSAPR----GFGVASSAKWWLASSSRDTVEQESGKEHDGVDAEDAVDVEARPYPKVGDVVRFKGKWKNDVSFGEVRQLQQVEETGEWRAYVLGLEPIGDDQYARK-NQKSKAEDAATLRPVRAFYVRSVDGFKVMHNSATGEPRYISDGYELEGFALPKIEVDPVKFAAELESYEDLKRRLVVDAALFGAVGAFATFQV 750
M R GA G L LAAGAA W L L + S+P + + AQRYR L SAP + V+ A L SSS D E ED VD+EARP+PKVGDVVR+KGKW+N+VSFGE+RQL++VEE+G WRAYVLGL+ IG+DQYARK NQKSKAED TLRPVRAFYVRSVDGFKVMHNS +GEPRYISD YELEGF LPKIEVDPVKFAAELESYEDLKRRLVVDAALFGAVGAFA FQ+
Sbjct: 1 MVRWGAHVLGILTLAAGAAAWNFALPRMGPSSQL---RMASHPRVSGIQAQRYRRLPSAPHDHRHNYWVSRHATSRLGSSSPDASVAE---------GEDVVDLEARPFPKVGDVVRYKGKWENEVSFGEIRQLRKVEESGGWRAYVLGLDSIGNDQYARKKNQKSKAEDVTTLRPVRAFYVRSVDGFKVMHNSDSGEPRYISDAYELEGFELPKIEVDPVKFAAELESYEDLKRRLVVDAALFGAVGAFAAFQI 243
BLAST of mRNA_S-firma_F_contig10890.1182.1 vs. uniprot
Match: A0A7S3UZL7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZL7_HETAK) HSP 1 Score: 140 bits (352), Expect = 6.960e-36 Identity = 72/150 (48.00%), Postives = 95/150 (63.33%), Query Frame = 1
Query: 307 RPYPKVGDVVRFKGKWKNDVSFGEVRQLQQVEETGEWRAYVLGLEPIGDDQY-ARKNQKSKAEDAATLRPVRAFYVRSVDGFKVMHNSATGEPRYISDGYELEGFALPKIEVDPVKFAAELESYEDLKRRLVVDAALFGAV--GAFATFQ 747
RPYP+ GD+V F GKW+++ SFG +R LQ +E W A VL L IG++ Y A++ +++ D LRPVR+FYVRS DG+KV+ G P + +D YE+EGF LPK +VD +A Y DLK RL+ D ALFGA A A FQ
Sbjct: 75 RPYPRAGDIVTFPGKWQDETSFGRIRNLQYIESRNAWIADVLPLSDIGENIYSAKRAARTEVYDVKDLRPVRSFYVRSSDGYKVIFGK-DGAPAFFADSYEVEGFKLPKPKVDEAAYAQSAVEYRDLKGRLLRDTALFGAACAAAAAVFQ 223
BLAST of mRNA_S-firma_F_contig10890.1182.1 vs. uniprot
Match: A0A6H5JKB3_9PHAE (Guanylate kinase-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKB3_9PHAE) HSP 1 Score: 124 bits (311), Expect = 1.660e-29 Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 1
Query: 547 FKVMHNSATGEPRYISDGYELEGFALPKIEVDPVKFAAELESYEDLKRRLVVDAALFGAVGAFATFQV 750
++VMHNS +GEPRYISD YELEGF LPKIEVDPVKFAAELESYEDLKRRLVVDAALFGAVGAFA FQV
Sbjct: 5 WQVMHNSDSGEPRYISDAYELEGFELPKIEVDPVKFAAELESYEDLKRRLVVDAALFGAVGAFAAFQV 72
BLAST of mRNA_S-firma_F_contig10890.1182.1 vs. uniprot
Match: A0A835YPD8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPD8_9STRA) HSP 1 Score: 120 bits (302), Expect = 1.190e-27 Identity = 70/146 (47.95%), Postives = 86/146 (58.90%), Query Frame = 1
Query: 310 PYPKVGDVVRFKGKWKNDVSFGEVRQLQQVEETGEWRAYVLGLEPIGDDQYARKNQ-KSKAEDAATLRPVRAFYVRSVDGFKVMHNSAT-GEPRYISDGYELEGFALPKIE-VDPVKFAAELESYEDLKRRLVVDAALFGAVGAFA 738
P P++GDVVR+ GKW +DVS GE++ LQ + W A VL L+ IGD QYAR+ + ED LRPVRAFYVRSVD F+V NS G+ Y Y ++ F LP VD L YE LK RL+ D LFGA G+ A
Sbjct: 94 PEPQIGDVVRYPGKWADDVSLGEIKGLQYIAARNTWIADVLPLKEIGDGQYARRRGWGTNVEDVEKLRPVRAFYVRSVDAFQVRTNSDDPGDLVYAGPCYNIKDFELPPPPPVDSASAEMSLAEYEALKVRLLRDTLLFGAAGSVA 239
BLAST of mRNA_S-firma_F_contig10890.1182.1 vs. uniprot
Match: W7T8G9_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T8G9_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.400e-21 Identity = 57/155 (36.77%), Postives = 80/155 (51.61%), Query Frame = 1
Query: 310 PYPKVGDVVRFKGKWKNDVSFGEVRQLQQVEETG---EWRAYVLGLEPIGDDQY-ARKNQKSKAEDAATLRPVRAFYVRSVDGFKVMHNSATG--------EPRYISDGYELEGFALPKIEVDPVKFAAELESYEDLKRRLVVDAALFGAVGAFA 738
PYP++GDVV F GKW D G++R LQ + EW A + + +G+D Y A K +++ + L+P+ FY+ S D FKV H G EP ++ GY EGF+L +VD A Y DLKRR++ D A FG + A
Sbjct: 95 PYPRLGDVVLFPGKWVGDTGIGQIRFLQLTGDGRGGKEWIADLTPFKDVGEDLYRAEKGARARTFPVSALQPLSHFYIGSSDAFKVPHKEEAGGEGMGRRREPVRMAPGYRTEGFSLAPAKVDAEAMEAARSKYRDLKRRILTDTAAFGGLATVA 249
BLAST of mRNA_S-firma_F_contig10890.1182.1 vs. uniprot
Match: K8YPQ0_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YPQ0_NANGC) HSP 1 Score: 97.8 bits (242), Expect = 1.610e-20 Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 1
Query: 310 PYPKVGDVVRFKGKWKNDVSFGEVRQLQQVEETG---EWRAYVLGLEPIGDDQY-ARKNQKSKAEDAATLRPVRAFYVRSVDGFKVMHNSATG--------EPRYISDGYELEGFALPKIEVDPVKFAAELESYEDLKRRLVVDAA 711
PYP++GDVV F GKW D G++R LQ + EW A + + +G+D Y A K +++ + L+P+ FY+ S D FKV H G EP ++ GY EGF+L +VD A Y DLKRR++ D A
Sbjct: 64 PYPRLGDVVLFPGKWVGDTGIGQIRFLQLTGDGRGGKEWIADLTPFKDVGEDLYRAEKGARARTFPVSALQPLSHFYIGSSDAFKVPHKEEAGGEGMGRRREPVRMAPGYRTEGFSLAPAKVDAEAMEAARSKYRDLKRRILTDTA 209
BLAST of mRNA_S-firma_F_contig10890.1182.1 vs. uniprot
Match: A0A7S2CPA4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPA4_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 2.470e-13 Identity = 45/128 (35.16%), Postives = 74/128 (57.81%), Query Frame = 1
Query: 313 YPKVGDVVRFKGKWKNDVSFGEVRQLQQVEETGEWRAYVLGLEPIGDDQYAR-KNQK-SKAEDAATLRPVRAFYVRSVDGFKVMHNSATGEPRYISDGYELE-GFALPKIEVDPVKFAAELESYEDLK 687
YP +GD+V F G + D++ G + +Q ++ EW V+ ++ GD+ Y+ KN++ S+ + LRP+RA +VRS +G+K+ + G +DGY ++ F LPK V+ K LE YE+LK
Sbjct: 49 YPALGDIVSFPGAY-GDLAVGRLAFIQYIKSREEWIGDVVLMKETGDNYYSEIKNRRVSETRPLSELRPMRANFVRSTNGWKISSDKE-GNLLAFADGYVIDDSFQLPKPVVNETKMTESLEDYEELK 174
BLAST of mRNA_S-firma_F_contig10890.1182.1 vs. uniprot
Match: A0A7S0SS28_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SS28_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 7.950e-10 Identity = 43/151 (28.48%), Postives = 76/151 (50.33%), Query Frame = 1
Query: 301 EARPYPKVGDVVRFKGKWKNDVSFGEVRQLQQVEETGEWRAYVLGLEPI----GDDQYA-RKNQKSKAEDAATLRPVRAFYVRSVDGFKVMHNSATGEPRYISDGYEL--EGFALPKIEVDPVKFAAELESYEDLKRRLVVDAALFGAVGA 732
E RP P+ GDVV +GKW+ + G +R L++ E +Y+ + P+ D+ Y ++ +S + L+PV+ +YVRS +G+K++ S + + + Y L G LP ++ ++ Y+ LKRRL G +G+
Sbjct: 77 EIRPLPREGDVVLCQGKWETEEILGNIRSLRESYYNNE-TSYIADVTPLKEGKSDNVYVIDRSSRSLSMPITKLKPVKFYYVRSENGYKILFQSNSTKYALRAPSYRLIEPGAKLPTKAINLATLEEDMVDYDVLKRRLQSYTLQIGGIGS 226 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10890.1182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10890.1182.1 >prot_S-firma_F_contig10890.1182.1 ID=prot_S-firma_F_contig10890.1182.1|Name=mRNA_S-firma_F_contig10890.1182.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=250bp MARRGAQAWGTLALAAGAAGWWVELGVQHGCCSLTATQTTSYPGLFVVGAback to top mRNA from alignment at S-firma_F_contig10890:315..3382- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10890.1182.1 ID=mRNA_S-firma_F_contig10890.1182.1|Name=mRNA_S-firma_F_contig10890.1182.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3068bp|location=Sequence derived from alignment at S-firma_F_contig10890:315..3382- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10890:315..3382- >mRNA_S-firma_F_contig10890.1182.1 ID=mRNA_S-firma_F_contig10890.1182.1|Name=mRNA_S-firma_F_contig10890.1182.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1500bp|location=Sequence derived from alignment at S-firma_F_contig10890:315..3382- (Sphaerotrichia firma ET2_F female)back to top |