mRNA_S-firma_F_contig10887.1178.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE) HSP 1 Score: 211 bits (537), Expect = 5.950e-61 Identity = 138/276 (50.00%), Postives = 165/276 (59.78%), Query Frame = 1
Query: 10 WKSTSIKYPRSNKKARDKATEAQFFEDWWPYHSGGSIVPRLRDLRHAIEAAEVAAEPREKRPRDCHRSSA--QHARPEKRGGKREGAGRPRGSFGPKKLREVLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
W S IK P+ RD A E +F W P S G+ VP A AA PREKRPRDC ++A + A K GG R G+GRP+GS+G K++RE + E G+ A IA R+LP M AVK+ Q + W PAFL+RQ RGV + ALRKL K R Q EKA + ACR GWE +Y RAV KEC A A S GL+ESV VSHAQAG L KAL L+ VY KLL GA KRQAFEDTA+ EVA +T++ WE +R KGHI
Sbjct: 59 WCSPYIKCPKGRNTGRDWAAEDRFAATWRPSFSSGN-VPHT----DASAGEAEAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPGDMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 329
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE) HSP 1 Score: 211 bits (537), Expect = 2.570e-59 Identity = 138/276 (50.00%), Postives = 165/276 (59.78%), Query Frame = 1
Query: 10 WKSTSIKYPRSNKKARDKATEAQFFEDWWPYHSGGSIVPRLRDLRHAIEAAEVAAEPREKRPRDCHRSSA--QHARPEKRGGKREGAGRPRGSFGPKKLREVLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
W S IK P+ RD A E +F W P S G+ VP A AA PREKRPRDC ++A + A K GG R G+GRP+GS+G K++RE + E G+ A IA R+LP M AVK+ Q + W PAFL+RQ RGV + ALRKL K R Q EKA + ACR GWE +Y RAV KEC A A S GL+ESV VSHAQAG L KAL L+ VY KLL GA KRQAFEDTA+ EVA +T++ WE +R KGHI
Sbjct: 59 WCSPYIKCPKGRNTGRDWAAEDRFAATWRPSFSSGN-VPHT----DASAGEAEAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPGDMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 329
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: A0A6H5K534_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K534_9PHAE) HSP 1 Score: 186 bits (471), Expect = 5.930e-53 Identity = 125/279 (44.80%), Postives = 159/279 (56.99%), Query Frame = 1
Query: 1 RTQWKSTSIKYPRSNKKARDKATEAQFFEDWWPYHSGGSIVPRLRDLRHAIEAAEVAAEPREKRPRDCHRS--SAQHARPEKRGGKREGAGRPRGSFGPKKLREVLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
R +W S K+P+ RD A E ++ W P+ G++ D+R A EA AA PREK DC + S A P KRGG R GAGRP+GS+G K+LR+ + E G+L AQ+ R+LP M AVK++ QQ + PAFL+RQ RG+ K AA + ACR GWE +Y R V KEC A AV S GL+ESV VSH QAG L KAL L +Y KLL G +KRQAFE+TA+ EVA +T++ WE +R KGHI
Sbjct: 65 RQRWCSPYNKFPKGRTTGRDWAAEDRWAATWRPFFCSGNVPHN--DVR-AREAE--AAPPREKWQPDCQHAAESTGDAPPGKRGGARPGAGRPKGSYGRKRLRQAAQQLNDDLERGKLQCAQMVSRDLPGAMSDAVKEAHQQEEACRPAFLKRQSNRGLEKAAAA----------------SAACRSGWERGQDYFRVVIKECQSAVAVTSAGLNESVLVSHTQAGSLQFKALALNGLYHKLLRGVSKRQAFEETAEFFEVAFSTLREWELSYRTKGHI 322
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE) HSP 1 Score: 189 bits (481), Expect = 6.060e-52 Identity = 119/241 (49.38%), Postives = 150/241 (62.24%), Query Frame = 1
Query: 115 SIVPRLRDLRHAIEAAEVAAEPREKRPRDCHRS--SAQHARPEKRGGKREGAGRPRGSFGPKKLREVLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
S+ L L H AEV PREKRPRDC + S A P KRGG R GAGRP+GS+G +LR+ + E G+L AQ+ R+LP M AVK++ QQ + PAFL+RQ RG+ + ALRKL K + Q +K + ACR GWE RAV KEC A AV S GL+ESV VSH+QAG L KAL + +Y KLL G +KRQAFE+TA+ EVA++T++ WE +R KGHI
Sbjct: 9 SLATILATLAHRGGEAEVTP-PREKRPRDCQHAAESTGDAPPGKRGGARPGAGRPKGSYGRNRLRQAAQQLNGYLERGQLQCAQMVSRDLPGAMLDAVKEAHQQEVVYRPAFLKRQSNRGLGRKEALRKLAKHQSQLQKEAAASAACRSGWERGQGCLRAVIKECQSAIAVTSAGLNESVLVSHSQAGSLQFKALARKGLYHKLLRGVSKRQAFEETAEFFEVASSTLREWELSYRTKGHI 248
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE) HSP 1 Score: 177 bits (450), Expect = 4.270e-49 Identity = 115/231 (49.78%), Postives = 144/231 (62.34%), Query Frame = 1
Query: 178 PREKRPRDC-HR---SSAQHARPEKRGGKREGAGRPRGSFGPKKLREVLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAA---------VHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
PREKR RDC HR A P KRGG R GAGRP+GS+G K+LR+ + E G+L AQ+ R+LP M AVK++ QQ + + PAFL+RQ RGV + ALRKL K R Q EKA + + ACR GWE +Y RAV KEC ++ V +T ESV VSHAQAG L KAL L+ +Y LL G +KRQAFE+TA+ EVA++T + WE +R KGHI
Sbjct: 114 PREKRLRDCQHRLCCGITGDAPPGKRGGARPGAGRPKGSYGRKRLRQAAQQLNYYLERGQLQCAQMVSRDLPGAMSYAVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAVASAACRSGWEGGQDYFRAVIKECQSCSSHTCWTQCKRVWATRCSESVLVSHAQAGSLQFKALALKGLYHMLLRGVSKRQAFEETAEFFEVASSTPREWELSYRTKGHI 344
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: D7G1V5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V5_ECTSI) HSP 1 Score: 154 bits (390), Expect = 1.620e-43 Identity = 80/145 (55.17%), Postives = 107/145 (73.79%), Query Frame = 1
Query: 397 AVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
A ++ ++ ++W+PAFL+RQ RGV + ALRKL K R Q EKA L + AC+ GWE+ +EY RAV KEC GA A S GL+E++DVSHAQAGKL+ +A LR VY KLL G +KRQAFE +A+ LE+A T+++WE ++R KGHI
Sbjct: 4 ASQEVDKHEKDWQPAFLKRQSNRGVGRKEALRKLAKHRSQLEKASLASAACKAGWEKGLEYFRAVAKECNGAVAATSAGLEETIDVSHAQAGKLLTQAQALRAVYSKLLQGVSKRQAFEGSAEFLELAVGTIKQWELEYRTKGHI 148
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: A0A6H5JGM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM4_9PHAE) HSP 1 Score: 162 bits (410), Expect = 2.650e-43 Identity = 108/225 (48.00%), Postives = 138/225 (61.33%), Query Frame = 1
Query: 169 AAEPREKRPRDCHRSSAQ--HARPEKRGGKREGAGRPRGSFGPKKLREVLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPA--FLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
AA PREKRPRDC ++A A P RGG R GAGRP+GS+G K+L + + E G+L AQ+ R+LP M AVK++ QQ + + PA FL+RQ ++ ALRKL K R Q EKA + ACR GWE +Y RAV KEC A AV S GL+ AG L KAL L+ +Y KLL G KRQAFE+TA+ +VA++T++ WE +R KGHI
Sbjct: 68 AAPPREKRPRDCQHAAASTGDAPPGTRGGARPGAGRPKGSYGRKRLPQAAQQLNDYLERGQLQCAQMVSRDLPGAMSDAVKEAHQQEEVYRPAXAFLKRQSN---SRKEALRKLTKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAVTSAGLN---------AGSLQFKALALKGLYHKLLRGVPKRQAFEETAEFFQVASSTLREWELSYRTKGHI 280
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: D8LEU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU9_ECTSI) HSP 1 Score: 149 bits (377), Expect = 2.350e-41 Identity = 84/175 (48.00%), Postives = 118/175 (67.43%), Query Frame = 1
Query: 307 VLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
+++ Y+A E+ +L A +R L M A ++ ++ ++W AFL+RQ RGV +T AL KL R Q EKA L + A + GWE+ VEY RAV KEC A A S GLDE++DVSHAQAGKL+ KAL LR VY KLL G ++R+AFE +A+ +E++ T+++WE ++R KGHI
Sbjct: 1 MMETYQACVEQDQLAFAGWHVRALSSAMFDAAREVDRHEKDWRQAFLKRQSNRGVRRTEALGKLANHRSQLEKAALASAARKAGWEKGVEYFRAVVKECQSAVAATSAGLDETMDVSHAQAGKLLIKALALRAVYSKLLEGVSRREAFEASAEFVEMSEGTIKQWELEYRTKGHI 175
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: A0A6H5LDJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDJ5_9PHAE) HSP 1 Score: 149 bits (375), Expect = 5.280e-41 Identity = 83/145 (57.24%), Postives = 102/145 (70.34%), Query Frame = 1
Query: 397 AVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
AVK++ QQ + + PAFL+RQ RGV + ALRKL K R Q EKA + ACR GWE +Y RAV KEC A AV S GL+ESV VSHAQAG L KAL L+ +Y KLL G +KRQAFE+TA+ EVA++T++ WE +R KGHI
Sbjct: 4 AVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQFAVAVSSAGLNESVLVSHAQAGSLQLKALALKGLYHKLLRGVSKRQAFEETAEFFEVASSTLREWELSYRTKGHI 148
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: A0A6H5JXV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV4_9PHAE) HSP 1 Score: 137 bits (345), Expect = 1.940e-35 Identity = 94/212 (44.34%), Postives = 115/212 (54.25%), Query Frame = 1
Query: 4 TQWKSTSIKYPRSNKKARDKATEAQFFEDWWPYHSGGSIVPRLRDLRHAIEAAEVAAEPREKRPRDC------------HRSSAQHARPEKRGGKREGAGRPRGSFGPKKLREVLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKEC 603
T+W++ IKYP+SNKKARD A EA W P H R L E A PR KRPRDC H AQ A P GAGRP+GSFG K+L E++ YKA E+G+L A + +R+L M A + ++ W PAFL+RQ RG+ + ALRKL K R Q EKA L AC+ GWE+ VEY RAV KEC
Sbjct: 49 TRWRTDCIKYPKSNKKARDWAAEAALAAVWRPSH-----CDRYATLSKDTSKVEPAP-PRTKRPRDCCQQDLSCGRDHCHTPPAQRAAP-------AGAGRPKGSFGRKRLHEMMATYKARVEQGQLEFADMHVRDLSTAMLDAAVEVDKHEDVWRPAFLKRQSDRGMRRAEALRKLAKHRSQLEKAALAATACKAGWEKGVEYFRAVVKEC 247 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10887.1178.1 >prot_S-firma_F_contig10887.1178.1 ID=prot_S-firma_F_contig10887.1178.1|Name=mRNA_S-firma_F_contig10887.1178.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=277bp RTQWKSTSIKYPRSNKKARDKATEAQFFEDWWPYHSGGSIVPRLRDLRHAback to top mRNA from alignment at S-firma_F_contig10887:3272..4367- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10887.1178.1 ID=mRNA_S-firma_F_contig10887.1178.1|Name=mRNA_S-firma_F_contig10887.1178.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1096bp|location=Sequence derived from alignment at S-firma_F_contig10887:3272..4367- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10887:3272..4367- >mRNA_S-firma_F_contig10887.1178.1 ID=mRNA_S-firma_F_contig10887.1178.1|Name=mRNA_S-firma_F_contig10887.1178.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1662bp|location=Sequence derived from alignment at S-firma_F_contig10887:3272..4367- (Sphaerotrichia firma ET2_F female)back to top |