mRNA_S-firma_F_contig10887.1178.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10887.1178.1
Unique NamemRNA_S-firma_F_contig10887.1178.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 5.950e-61
Identity = 138/276 (50.00%), Postives = 165/276 (59.78%), Query Frame = 1
Query:   10 WKSTSIKYPRSNKKARDKATEAQFFEDWWPYHSGGSIVPRLRDLRHAIEAAEVAAEPREKRPRDCHRSSA--QHARPEKRGGKREGAGRPRGSFGPKKLREVLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
            W S  IK P+     RD A E +F   W P  S G+ VP       A      AA PREKRPRDC  ++A  + A   K GG R G+GRP+GS+G K++RE  +      E G+   A IA R+LP  M  AVK+  Q  + W PAFL+RQ  RGV +  ALRKL K R Q EKA   + ACR GWE   +Y RAV KEC  A A  S GL+ESV VSHAQAG L  KAL L+ VY KLL GA KRQAFEDTA+  EVA +T++ WE  +R KGHI
Sbjct:   59 WCSPYIKCPKGRNTGRDWAAEDRFAATWRPSFSSGN-VPHT----DASAGEAEAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPGDMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 329          
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 2.570e-59
Identity = 138/276 (50.00%), Postives = 165/276 (59.78%), Query Frame = 1
Query:   10 WKSTSIKYPRSNKKARDKATEAQFFEDWWPYHSGGSIVPRLRDLRHAIEAAEVAAEPREKRPRDCHRSSA--QHARPEKRGGKREGAGRPRGSFGPKKLREVLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
            W S  IK P+     RD A E +F   W P  S G+ VP       A      AA PREKRPRDC  ++A  + A   K GG R G+GRP+GS+G K++RE  +      E G+   A IA R+LP  M  AVK+  Q  + W PAFL+RQ  RGV +  ALRKL K R Q EKA   + ACR GWE   +Y RAV KEC  A A  S GL+ESV VSHAQAG L  KAL L+ VY KLL GA KRQAFEDTA+  EVA +T++ WE  +R KGHI
Sbjct:   59 WCSPYIKCPKGRNTGRDWAAEDRFAATWRPSFSSGN-VPHT----DASAGEAEAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPGDMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 329          
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: A0A6H5K534_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K534_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 5.930e-53
Identity = 125/279 (44.80%), Postives = 159/279 (56.99%), Query Frame = 1
Query:    1 RTQWKSTSIKYPRSNKKARDKATEAQFFEDWWPYHSGGSIVPRLRDLRHAIEAAEVAAEPREKRPRDCHRS--SAQHARPEKRGGKREGAGRPRGSFGPKKLREVLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
            R +W S   K+P+     RD A E ++   W P+   G++     D+R A EA   AA PREK   DC  +  S   A P KRGG R GAGRP+GS+G K+LR+  +      E G+L  AQ+  R+LP  M  AVK++ QQ +   PAFL+RQ  RG+ K AA                 + ACR GWE   +Y R V KEC  A AV S GL+ESV VSH QAG L  KAL L  +Y KLL G +KRQAFE+TA+  EVA +T++ WE  +R KGHI
Sbjct:   65 RQRWCSPYNKFPKGRTTGRDWAAEDRWAATWRPFFCSGNVPHN--DVR-AREAE--AAPPREKWQPDCQHAAESTGDAPPGKRGGARPGAGRPKGSYGRKRLRQAAQQLNDDLERGKLQCAQMVSRDLPGAMSDAVKEAHQQEEACRPAFLKRQSNRGLEKAAAA----------------SAACRSGWERGQDYFRVVIKECQSAVAVTSAGLNESVLVSHTQAGSLQFKALALNGLYHKLLRGVSKRQAFEETAEFFEVAFSTLREWELSYRTKGHI 322          
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 6.060e-52
Identity = 119/241 (49.38%), Postives = 150/241 (62.24%), Query Frame = 1
Query:  115 SIVPRLRDLRHAIEAAEVAAEPREKRPRDCHRS--SAQHARPEKRGGKREGAGRPRGSFGPKKLREVLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
            S+   L  L H    AEV   PREKRPRDC  +  S   A P KRGG R GAGRP+GS+G  +LR+  +      E G+L  AQ+  R+LP  M  AVK++ QQ   + PAFL+RQ  RG+ +  ALRKL K + Q +K    + ACR GWE      RAV KEC  A AV S GL+ESV VSH+QAG L  KAL  + +Y KLL G +KRQAFE+TA+  EVA++T++ WE  +R KGHI
Sbjct:    9 SLATILATLAHRGGEAEVTP-PREKRPRDCQHAAESTGDAPPGKRGGARPGAGRPKGSYGRNRLRQAAQQLNGYLERGQLQCAQMVSRDLPGAMLDAVKEAHQQEVVYRPAFLKRQSNRGLGRKEALRKLAKHQSQLQKEAAASAACRSGWERGQGCLRAVIKECQSAIAVTSAGLNESVLVSHSQAGSLQFKALARKGLYHKLLRGVSKRQAFEETAEFFEVASSTLREWELSYRTKGHI 248          
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 4.270e-49
Identity = 115/231 (49.78%), Postives = 144/231 (62.34%), Query Frame = 1
Query:  178 PREKRPRDC-HR---SSAQHARPEKRGGKREGAGRPRGSFGPKKLREVLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAA---------VHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
            PREKR RDC HR        A P KRGG R GAGRP+GS+G K+LR+  +      E G+L  AQ+  R+LP  M  AVK++ QQ + + PAFL+RQ  RGV +  ALRKL K R Q EKA + + ACR GWE   +Y RAV KEC   ++         V +T   ESV VSHAQAG L  KAL L+ +Y  LL G +KRQAFE+TA+  EVA++T + WE  +R KGHI
Sbjct:  114 PREKRLRDCQHRLCCGITGDAPPGKRGGARPGAGRPKGSYGRKRLRQAAQQLNYYLERGQLQCAQMVSRDLPGAMSYAVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAVASAACRSGWEGGQDYFRAVIKECQSCSSHTCWTQCKRVWATRCSESVLVSHAQAGSLQFKALALKGLYHMLLRGVSKRQAFEETAEFFEVASSTPREWELSYRTKGHI 344          
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: D7G1V5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V5_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.620e-43
Identity = 80/145 (55.17%), Postives = 107/145 (73.79%), Query Frame = 1
Query:  397 AVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
            A ++ ++  ++W+PAFL+RQ  RGV +  ALRKL K R Q EKA L + AC+ GWE+ +EY RAV KEC GA A  S GL+E++DVSHAQAGKL+ +A  LR VY KLL G +KRQAFE +A+ LE+A  T+++WE ++R KGHI
Sbjct:    4 ASQEVDKHEKDWQPAFLKRQSNRGVGRKEALRKLAKHRSQLEKASLASAACKAGWEKGLEYFRAVAKECNGAVAATSAGLEETIDVSHAQAGKLLTQAQALRAVYSKLLQGVSKRQAFEGSAEFLELAVGTIKQWELEYRTKGHI 148          
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: A0A6H5JGM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM4_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.650e-43
Identity = 108/225 (48.00%), Postives = 138/225 (61.33%), Query Frame = 1
Query:  169 AAEPREKRPRDCHRSSAQ--HARPEKRGGKREGAGRPRGSFGPKKLREVLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPA--FLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
            AA PREKRPRDC  ++A    A P  RGG R GAGRP+GS+G K+L +  +      E G+L  AQ+  R+LP  M  AVK++ QQ + + PA  FL+RQ     ++  ALRKL K R Q EKA   + ACR GWE   +Y RAV KEC  A AV S GL+         AG L  KAL L+ +Y KLL G  KRQAFE+TA+  +VA++T++ WE  +R KGHI
Sbjct:   68 AAPPREKRPRDCQHAAASTGDAPPGTRGGARPGAGRPKGSYGRKRLPQAAQQLNDYLERGQLQCAQMVSRDLPGAMSDAVKEAHQQEEVYRPAXAFLKRQSN---SRKEALRKLTKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAVTSAGLN---------AGSLQFKALALKGLYHKLLRGVPKRQAFEETAEFFQVASSTLREWELSYRTKGHI 280          
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: D8LEU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU9_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 2.350e-41
Identity = 84/175 (48.00%), Postives = 118/175 (67.43%), Query Frame = 1
Query:  307 VLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
            +++ Y+A  E+ +L  A   +R L   M  A ++ ++  ++W  AFL+RQ  RGV +T AL KL   R Q EKA L + A + GWE+ VEY RAV KEC  A A  S GLDE++DVSHAQAGKL+ KAL LR VY KLL G ++R+AFE +A+ +E++  T+++WE ++R KGHI
Sbjct:    1 MMETYQACVEQDQLAFAGWHVRALSSAMFDAAREVDRHEKDWRQAFLKRQSNRGVRRTEALGKLANHRSQLEKAALASAARKAGWEKGVEYFRAVVKECQSAVAATSAGLDETMDVSHAQAGKLLIKALALRAVYSKLLEGVSRREAFEASAEFVEMSEGTIKQWELEYRTKGHI 175          
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: A0A6H5LDJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDJ5_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 5.280e-41
Identity = 83/145 (57.24%), Postives = 102/145 (70.34%), Query Frame = 1
Query:  397 AVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKECLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAFEDTAKLLEVAATTVQRWERKFRNKGHI 831
            AVK++ QQ + + PAFL+RQ  RGV +  ALRKL K R Q EKA   + ACR GWE   +Y RAV KEC  A AV S GL+ESV VSHAQAG L  KAL L+ +Y KLL G +KRQAFE+TA+  EVA++T++ WE  +R KGHI
Sbjct:    4 AVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQFAVAVSSAGLNESVLVSHAQAGSLQLKALALKGLYHKLLRGVSKRQAFEETAEFFEVASSTLREWELSYRTKGHI 148          
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Match: A0A6H5JXV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV4_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.940e-35
Identity = 94/212 (44.34%), Postives = 115/212 (54.25%), Query Frame = 1
Query:    4 TQWKSTSIKYPRSNKKARDKATEAQFFEDWWPYHSGGSIVPRLRDLRHAIEAAEVAAEPREKRPRDC------------HRSSAQHARPEKRGGKREGAGRPRGSFGPKKLREVLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPAFLERQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKEC 603
            T+W++  IKYP+SNKKARD A EA     W P H       R   L       E A  PR KRPRDC            H   AQ A P        GAGRP+GSFG K+L E++  YKA  E+G+L  A + +R+L   M  A  + ++    W PAFL+RQ  RG+ +  ALRKL K R Q EKA L   AC+ GWE+ VEY RAV KEC
Sbjct:   49 TRWRTDCIKYPKSNKKARDWAAEAALAAVWRPSH-----CDRYATLSKDTSKVEPAP-PRTKRPRDCCQQDLSCGRDHCHTPPAQRAAP-------AGAGRPKGSFGRKRLHEMMATYKARVEQGQLEFADMHVRDLSTAMLDAAVEVDKHEDVWRPAFLKRQSDRGMRRAEALRKLAKHRSQLEKAALAATACKAGWEKGVEYFRAVVKEC 247          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10887.1178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5KAS5_9PHAE5.950e-6150.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU25_9PHAE2.570e-5950.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K534_9PHAE5.930e-5344.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUL0_9PHAE6.060e-5249.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVH8_9PHAE4.270e-4949.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1V5_ECTSI1.620e-4355.17Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JGM4_9PHAE2.650e-4348.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEU9_ECTSI2.350e-4148.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LDJ5_9PHAE5.280e-4157.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV4_9PHAE1.940e-3544.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10887contigS-firma_F_contig10887:3272..4367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size833
Cds size831
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.2697423-CDS-S-firma_F_contig10887:3271..34631622815632.2697423-CDS-S-firma_F_contig10887:3271..3463Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10887 3272..3463 -
1696949467.1645691-CDS-S-firma_F_contig10887:3271..34631696949467.1645691-CDS-S-firma_F_contig10887:3271..3463Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10887 3272..3463 -
1622815632.2823877-CDS-S-firma_F_contig10887:3728..43671622815632.2823877-CDS-S-firma_F_contig10887:3728..4367Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10887 3729..4367 -
1696949467.1762562-CDS-S-firma_F_contig10887:3728..43671696949467.1762562-CDS-S-firma_F_contig10887:3728..4367Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10887 3729..4367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10887.1178.1prot_S-firma_F_contig10887.1178.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10887 3272..4367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10887.1178.1

>prot_S-firma_F_contig10887.1178.1 ID=prot_S-firma_F_contig10887.1178.1|Name=mRNA_S-firma_F_contig10887.1178.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=277bp
RTQWKSTSIKYPRSNKKARDKATEAQFFEDWWPYHSGGSIVPRLRDLRHA
IEAAEVAAEPREKRPRDCHRSSAQHARPEKRGGKREGAGRPRGSFGPKKL
REVLKVYKAATEEGRLMDAQIALRELPQLMRRAVKDSEQQFQNWEPAFLE
RQRTRGVAKTAALRKLRKKRKQWEKAMLRTRACRQGWEEAVEYCRAVEKE
CLGAAAVHSTGLDESVDVSHAQAGKLMQKALVLRIVYQKLLAGATKRQAF
EDTAKLLEVAATTVQRWERKFRNKGHI
back to top

mRNA from alignment at S-firma_F_contig10887:3272..4367-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10887.1178.1 ID=mRNA_S-firma_F_contig10887.1178.1|Name=mRNA_S-firma_F_contig10887.1178.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1096bp|location=Sequence derived from alignment at S-firma_F_contig10887:3272..4367- (Sphaerotrichia firma ET2_F female)
AGAACGCAGTGGAAGAGTACATCCATCAAGTATCCAAGGAGCAACAAGAA AGCACGCGACAAGGCCACCGAGGCCCAGTTCTTTGAGGACTGGTGGCCAT ACCACTCGGGAGGAAGCATCGTGCCGCGCCTTCGAGACCTCAGGCATGCC ATCGAGGCTGCGGAGGTTGCTGCCGAACCACGAGAAAAGAGACCGCGGGA CTGTCATCGCAGCAGTGCCCAACATGCACGCCCCGAGAAGCGCGGCGGCA AGCGCGAAGGCGCCGGTCGGCCACGCGGCAGCTTCGGCCCGAAGAAGCTA CGCGAGGTGCTGAAAGTATACAAGGCGGCGACGGAGGAAGGACGGCTCAT GGACGCGCAGATTGCTCTGCGCGAGCTTCCACAGCTCATGCGGCGTGCGG TAAAAGATTCGGAGCAGCAGTTCCAGAACTGGGAGCCGGCTTTTCTCGAG CGCCAGAGGACCAGGGGAGTCGCCAAGACTGCTGCTCTTCGCAAGCTGAG GAAGAAGAGGAAGCAGTGGGAGAAAGCGATGCTGCGCACAAGAGCCTGCA GGCAGGGGTGGGAGGAAGCAGTCGAGTACTGCAGGGCGGTCGAGAAGGAG TGTCTCGGAGCTGCTGCAGTCCACTCCACCGGGCTGGATGTGAGTACAGC TGACGCTGCTTGAGTATGTTAAGCTGTCTGGGCTTGCTGATACTGCCGCT GAAATACATGCACTGCTGCCAACCGAACTCTACGCATGCTACCGGAAACA CAGCAGTATATACTGCTGAATAAACATGTGTGCGCGTGTCTGTTTCCCTA CCAAATATGAGTGTGTGCAGTGCATCGAATGACCCCGACGCACTTTTTTT GTCTCCTTCTTTCCCCTTTGTTGTCACCGCTCAATTTCTGTGCGGCTGTT GCAGGAGTCTGTGGACGTTTCGCATGCACAAGCTGGCAAGCTCATGCAAA AGGCGCTTGTTTTGCGGATCGTGTACCAGAAGCTGCTGGCGGGAGCGACG AAAAGACAAGCGTTCGAGGACACGGCGAAGTTGCTGGAGGTGGCAGCGAC AACCGTGCAACGTTGGGAGCGCAAGTTCAGGAACAAGGGACACATC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10887:3272..4367-

>mRNA_S-firma_F_contig10887.1178.1 ID=mRNA_S-firma_F_contig10887.1178.1|Name=mRNA_S-firma_F_contig10887.1178.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1662bp|location=Sequence derived from alignment at S-firma_F_contig10887:3272..4367- (Sphaerotrichia firma ET2_F female)
AGAACGCAGTGGAAGAGTACATCCATCAAGTATCCAAGGAGCAACAAGAA
AGCACGCGACAAGGCCACCGAGGCCCAGTTCTTTGAGGACTGGTGGCCAT
ACCACTCGGGAGGAAGCATCGTGCCGCGCCTTCGAGACCTCAGGCATGCC
ATCGAGGCTGCGGAGGTTGCTGCCGAACCACGAGAAAAGAGACCGCGGGA
CTGTCATCGCAGCAGTGCCCAACATGCACGCCCCGAGAAGCGCGGCGGCA
AGCGCGAAGGCGCCGGTCGGCCACGCGGCAGCTTCGGCCCGAAGAAGCTA
CGCGAGGTGCTGAAAGTATACAAGGCGGCGACGGAGGAAGGACGGCTCAT
GGACGCGCAGATTGCTCTGCGCGAGCTTCCACAGCTCATGCGGCGTGCGG
TAAAAGATTCGGAGCAGCAGTTCCAGAACTGGGAGCCGGCTTTTCTCGAG
CGCCAGAGGACCAGGGGAGTCGCCAAGACTGCTGCTCTTCGCAAGCTGAG
GAAGAAGAGGAAGCAGTGGGAGAAAGCGATGCTGCGCACAAGAGCCTGCA
GGCAGGGGTGGGAGGAAGCAGTCGAGTACTGCAGGGCGGTCGAGAAGGAG
TGTCTCGGAGCTGCTGCAGTCCACTCCACCGGGCTGGATAGAACGCAGTG
GAAGAGTACATCCATCAAGTATCCAAGGAGCAACAAGAAAGCACGCGACA
AGGCCACCGAGGCCCAGTTCTTTGAGGACTGGTGGCCATACCACTCGGGA
GGAAGCATCGTGCCGCGCCTTCGAGACCTCAGGCATGCCATCGAGGCTGC
GGAGGTTGCTGCCGAACCACGAGAAAAGAGACCGCGGGACTGTCATCGCA
GCAGTGCCCAACATGCACGCCCCGAGAAGCGCGGCGGCAAGCGCGAAGGC
GCCGGTCGGCCACGCGGCAGCTTCGGCCCGAAGAAGCTACGCGAGGTGCT
GAAAGTATACAAGGCGGCGACGGAGGAAGGACGGCTCATGGACGCGCAGA
TTGCTCTGCGCGAGCTTCCACAGCTCATGCGGCGTGCGGTAAAAGATTCG
GAGCAGCAGTTCCAGAACTGGGAGCCGGCTTTTCTCGAGCGCCAGAGGAC
CAGGGGAGTCGCCAAGACTGCTGCTCTTCGCAAGCTGAGGAAGAAGAGGA
AGCAGTGGGAGAAAGCGATGCTGCGCACAAGAGCCTGCAGGCAGGGGTGG
GAGGAAGCAGTCGAGTACTGCAGGGCGGTCGAGAAGGAGTGTCTCGGAGC
TGCTGCAGTCCACTCCACCGGGCTGGATGAGTCTGTGGACGTTTCGCATG
CACAAGCTGGCAAGCTCATGCAAAAGGCGCTTGTTTTGCGGATCGTGTAC
CAGAAGCTGCTGGCGGGAGCGACGAAAAGACAAGCGTTCGAGGACACGGC
GAAGTTGCTGGAGGTGGCAGCGACAACCGTGCAACGTTGGGAGCGCAAGT
TCAGGAACAAGGGACACATCGAGTCTGTGGACGTTTCGCATGCACAAGCT
GGCAAGCTCATGCAAAAGGCGCTTGTTTTGCGGATCGTGTACCAGAAGCT
GCTGGCGGGAGCGACGAAAAGACAAGCGTTCGAGGACACGGCGAAGTTGC
TGGAGGTGGCAGCGACAACCGTGCAACGTTGGGAGCGCAAGTTCAGGAAC
AAGGGACACATC
back to top