mRNA_S-firma_F_contig10884.1177.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10884.1177.1
Unique NamemRNA_S-firma_F_contig10884.1177.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10884.1177.1 vs. uniprot
Match: A0A835L1N0_SPOEX (Uncharacterized protein n=5 Tax=Spodoptera TaxID=7106 RepID=A0A835L1N0_SPOEX)

HSP 1 Score: 77.8 bits (190), Expect = 1.420e-14
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   32 CVAVLLACALAGRPHVFLGRPRGGFLGSPPAPEGFTPPVIQTYANRVDHFSPTDIRTYKQRFVVNDTFYQ--EGGPLFININGEAPS 286
            C+ ++L  A+ G  H  LGR +GG LG+P   +G   P  Q +  ++DH SP+D+RT+KQR+ VND+FY     GP+F+ I GE P+
Sbjct:    8 CLLLVLCYAVNGGKHFKLGRSKGGNLGAPGGYKGEPLPPAQWFKQKLDHSSPSDLRTWKQRYFVNDSFYDFNNQGPVFLMIGGEGPA 94          
BLAST of mRNA_S-firma_F_contig10884.1177.1 vs. uniprot
Match: UPI001ED8B0DE (putative serine protease K12H4.7 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8B0DE)

HSP 1 Score: 76.3 bits (186), Expect = 4.950e-14
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 2
Query:   20 LKPFCVAVLLACALAGRPHVFLGRPRGGFLGSPPAPEGFTPPVIQTYANRVDHFSPTDIRTYKQRFVVNDTFYQEGGPLFININGEAPSA 289
            L PF  + L  C   G       R  GG LG P     F+ P  Q ++ ++DHF+PTD+RT+KQR+  NDTFY  GGP+F+ I GE  ++
Sbjct:    7 LLPFLASAL--CFATGWKLSKKARYHGGLLGEPVMDRNFSLPPDQYFSQKLDHFNPTDVRTWKQRYFTNDTFYYAGGPVFLMIGGEGTAS 94          
BLAST of mRNA_S-firma_F_contig10884.1177.1 vs. uniprot
Match: A0A7R9MNW7_9ACAR (Hypothetical protein (Fragment) n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9MNW7_9ACAR)

HSP 1 Score: 71.2 bits (173), Expect = 7.560e-14
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 2
Query:   32 CVAVLLACALAG-RPHVFLGRP--RGGFLGSPPAPEG-----FTPPVIQTYANRVDHFSPTDIRTYKQRFVVNDTFYQEGGPLFININGE 277
            C+ +++ C L    P  F GRP  + G LGSP + +         P  Q +  R+DHF+P +I T+KQR+ +NDTFY +GGP+F+ + GE
Sbjct:    6 CILLIINCGLISCGPLFFRGRPLTKHGMLGSPVSTDNVYYNSLKLPEEQWFDQRLDHFNPVEITTWKQRYFINDTFYTKGGPIFLQLGGE 95          
BLAST of mRNA_S-firma_F_contig10884.1177.1 vs. uniprot
Match: A0A2G8JM64_STIJA (Uncharacterized protein n=2 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JM64_STIJA)

HSP 1 Score: 75.5 bits (184), Expect = 9.230e-14
Identity = 36/85 (42.35%), Postives = 50/85 (58.82%), Query Frame = 2
Query:   32 CVAVLLACALAGRPHVFLGRPRGGFLGSPPAPEGFTPPVIQTYANRVDHFSPTDIRTYKQRFVVNDTFYQEGGPLFININGEAPS 286
            C+ +L     +       GRPRGGFLGSP        P  Q    ++D+F+  D+RT+ QR+ VNDTFY+ GGP+F+ I GE P+
Sbjct:    7 CILLLFLGLTSSTKLFHHGRPRGGFLGSPKVAYEGELPKDQWITQKLDNFNDADLRTWSQRYFVNDTFYKSGGPVFLMIGGEGPA 91          
BLAST of mRNA_S-firma_F_contig10884.1177.1 vs. uniprot
Match: UPI0014254D13 (putative serine protease K12H4.7 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014254D13)

HSP 1 Score: 75.5 bits (184), Expect = 9.300e-14
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 2
Query:   35 VAVLLACALAGRPHVFLGRPRGGFLGSPPAPEGFTPPVIQTYANRVDHFSPTDIRTYKQRFVVNDTFYQEGGPLFININGE 277
            ++ ++  + A  P   LGRPRGG L  P   +    P  Q    ++DHF PT+ +T+KQR+ VNDTF++EGGP+F+ I GE
Sbjct:   22 LSFVIVVSEAAYPKYLLGRPRGGMLPPPVTNKYHVLPPDQWIEQKLDHFDPTNTKTWKQRYFVNDTFFKEGGPVFLMIGGE 102          
BLAST of mRNA_S-firma_F_contig10884.1177.1 vs. uniprot
Match: UPI0018D7117A (thymus-specific serine protease-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D7117A)

HSP 1 Score: 73.9 bits (180), Expect = 3.220e-13
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 2
Query:   71 PHVFLGRPRGGFLGSPPAPEGFTPPVIQTYANRVDHFSPTDIRTYKQRFVVNDTFYQEGGPLFININGE 277
            P    GRPRGG LG+P    G + P  Q    ++DHF+  D+RT++QR+ VNDTF++ GGP+F+ I GE
Sbjct:   23 PRFLHGRPRGGMLGAPRRRSGGSLPPDQWLEQKLDHFNDADLRTWQQRYFVNDTFFKPGGPVFLMIGGE 91          
BLAST of mRNA_S-firma_F_contig10884.1177.1 vs. uniprot
Match: UPI001454EE15 (thymus-specific serine protease-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001454EE15)

HSP 1 Score: 73.2 bits (178), Expect = 6.020e-13
Identity = 37/80 (46.25%), Postives = 48/80 (60.00%), Query Frame = 2
Query:   44 LLACALAGR--PHVFLGRPRGGFLGSPPAPEGFTPPVIQTYANRVDHFSPTDIRTYKQRFVVNDTFYQEGGPLFININGE 277
            LL C    R  P    GRPRGG +G+P        P  Q    ++DHF+  D+RT+KQR+ VNDTFY+ GGP+F+ I GE
Sbjct:   15 LLCCVGLTRSLPRFLHGRPRGGMVGAPRRQTDGPLPPDQWLEQKLDHFNDADLRTWKQRYFVNDTFYKPGGPVFLMIGGE 94          
BLAST of mRNA_S-firma_F_contig10884.1177.1 vs. uniprot
Match: A0A2A4JNU2_HELVI (Uncharacterized protein n=3 Tax=Heliothinae TaxID=95178 RepID=A0A2A4JNU2_HELVI)

HSP 1 Score: 72.8 bits (177), Expect = 7.940e-13
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 2
Query:   32 CVAVLLACALAGRPHVFLGRPRGGFLGSPPAPEGFTPPVIQTYANRVDHFSPTDIRTYKQRFVVNDTFY--QEGGPLFININGEAPS 286
            C+ ++L+    G     LGR +GG LG+P    G   P  Q +  ++DH SP+D+RT+KQR+ VND+FY  +  GP+F+ I GE P+
Sbjct:    9 CLILILSNVAYGGKQFRLGRSKGGNLGAPGGYSGEQLPPAQWFIQKLDHSSPSDLRTWKQRYFVNDSFYDFKNQGPVFLMIGGEGPA 95          
BLAST of mRNA_S-firma_F_contig10884.1177.1 vs. uniprot
Match: UPI0019D064C1 (putative serine protease F56F10.1 n=1 Tax=Pararge aegeria TaxID=116150 RepID=UPI0019D064C1)

HSP 1 Score: 72.4 bits (176), Expect = 1.050e-12
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 2
Query:   29 FCVAVLLACALAGRPHVFLGRPRGGFLGSPPAPEGFTPPVIQTYANRVDHFSPTDIRTYKQRFVVNDTFYQ--EGGPLFININGEAPS 286
            F + + + CA        LGR +GG LG+P   +G T P  Q +  ++DH SPTD+RT+KQR+ VN++FY     GP+F+ I GE P+
Sbjct:   12 FQLIIFVQCAK----RFHLGRSKGGNLGAPAGIKGVTLPPEQWFVQKLDHSSPTDMRTWKQRYFVNESFYDFNNPGPIFLMIGGEGPA 95          
BLAST of mRNA_S-firma_F_contig10884.1177.1 vs. uniprot
Match: UPI0003F0B4EE (putative serine protease K12H4.7-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0B4EE)

HSP 1 Score: 72.4 bits (176), Expect = 1.120e-12
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 2
Query:   32 CVAVLLACALAGRPHVFLGRPRGGFLGSPPAPEG-FTPPVIQTYANRVDHFSPTDIRTYKQRFVVNDTFYQEGGPLFININGEAP 283
            CV + +  ++   P+   GRPRGG +G P   E   T P  Q  + R+DH++  D+RT++QR+ ++D+ Y  GGP+F+NI GE P
Sbjct:   12 CVFLTVLPSVFSLPYFMNGRPRGGMVGVPVLSERPHTEPQEQWISQRLDHYNDADLRTWQQRYYIDDSHYIAGGPVFLNIGGEGP 96          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10884.1177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835L1N0_SPOEX1.420e-1443.68Uncharacterized protein n=5 Tax=Spodoptera TaxID=7... [more]
UPI001ED8B0DE4.950e-1442.22putative serine protease K12H4.7 n=1 Tax=Ischnura ... [more]
A0A7R9MNW7_9ACAR7.560e-1440.00Hypothetical protein (Fragment) n=1 Tax=Oppiella n... [more]
A0A2G8JM64_STIJA9.230e-1442.35Uncharacterized protein n=2 Tax=Stichopus japonicu... [more]
UPI0014254D139.300e-1443.21putative serine protease K12H4.7 n=1 Tax=Anneissia... [more]
UPI0018D7117A3.220e-1347.83thymus-specific serine protease-like n=1 Tax=Patir... [more]
UPI001454EE156.020e-1346.25thymus-specific serine protease-like n=1 Tax=Aster... [more]
A0A2A4JNU2_HELVI7.940e-1341.38Uncharacterized protein n=3 Tax=Heliothinae TaxID=... [more]
UPI0019D064C11.050e-1242.05putative serine protease F56F10.1 n=1 Tax=Pararge ... [more]
UPI0003F0B4EE1.120e-1240.00putative serine protease K12H4.7-like n=1 Tax=Sacc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10884contigS-firma_F_contig10884:2280..2952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog10224.XP_006823961.1
Preferred nameprss16
PFAMsPeptidase_S28
Max annot lvl33208|Metazoa
GOsGO:0003674,GO:0003824,GO:0004177,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Evalue1.53e-13
EggNOG OGsKOG2182@1|root,KOG2182@2759|Eukaryota,38H6D@33154|Opisthokonta,3BBCG@33208|Metazoa,3CS02@33213|Bilateria
Descriptionserine-type peptidase activity
COG categoryO
Hectar predicted targeting categorysignal peptide
Exons2
Model size310
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10884.1177.1prot_S-firma_F_contig10884.1177.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10884 2296..2952 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.1973197-UTR-S-firma_F_contig10884:2279..22951622815632.1973197-UTR-S-firma_F_contig10884:2279..2295Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10884 2280..2295 +
1696949467.1283052-UTR-S-firma_F_contig10884:2279..22951696949467.1283052-UTR-S-firma_F_contig10884:2279..2295Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10884 2280..2295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.2130227-CDS-S-firma_F_contig10884:2295..24371622815632.2130227-CDS-S-firma_F_contig10884:2295..2437Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10884 2296..2437 +
1696949467.1439931-CDS-S-firma_F_contig10884:2295..24371696949467.1439931-CDS-S-firma_F_contig10884:2295..2437Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10884 2296..2437 +
1622815632.2266917-CDS-S-firma_F_contig10884:2800..29521622815632.2266917-CDS-S-firma_F_contig10884:2800..2952Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10884 2801..2952 +
1696949467.1537647-CDS-S-firma_F_contig10884:2800..29521696949467.1537647-CDS-S-firma_F_contig10884:2800..2952Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10884 2801..2952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10884.1177.1

>prot_S-firma_F_contig10884.1177.1 ID=prot_S-firma_F_contig10884.1177.1|Name=mRNA_S-firma_F_contig10884.1177.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=98bp
MLKPFCVAVLLACALAGRPHVFLGRPRGGFLGSPPAPEGFTPPVIQTYAN
RVDHFSPTDIRTYKQRFVVNDTFYQEGGPLFININGEAPSAFVSGVV*
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mRNA from alignment at S-firma_F_contig10884:2280..2952+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10884.1177.1 ID=mRNA_S-firma_F_contig10884.1177.1|Name=mRNA_S-firma_F_contig10884.1177.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=673bp|location=Sequence derived from alignment at S-firma_F_contig10884:2280..2952+ (Sphaerotrichia firma ET2_F female)
GTTTGAAGTGACAGCCATGTTGAAGCCTTTTTGCGTCGCGGTGTTGCTTG CCTGCGCTTTGGCCGGGCGCCCGCATGTTTTCCTTGGACGTCCCCGCGGA GGCTTCCTTGGCTCCCCGCCCGCCCCCGAGGGCTTCACACCCCCGGTCAT TCAGACTTGTACGTTTGGCCCTTGGCCATGTCGGCTCTGTGCTGGCTGTG TGTGCATGGTGTGGAATGTTCCGTGTGTGGCTCTGTCTGTGGCTCTTTGT GTGGTTTGTGTGTCCGTGTTTTAAAGAAAGTTTCGTGGTTTTCGGAGACT GGCCTGCGGCTCCTCTCTCACCCAAACTGCGTAGATACCAACTGCGTGGA CCACTTGTCACCACACGTGTGAGGCACTGTCGGCTCCACGCTGGCTGTGT GTTTGCATGTTGTGCGATGAGTGGACCGTGTGGCCTTGTGTGCCGTTTGT GTGTGGCTCTGTGTGTGCCTTGTGTGTCCGTAAAGAGTTTCGTGGCGTTC TATCTCACACGCGCTGCGTAGATGCCAACCGCGTGGACCACTTTTCGCCA ACGGACATTCGCACGTACAAGCAGCGGTTTGTCGTGAACGACACGTTTTA TCAGGAAGGTGGCCCCCTCTTCATCAACATCAACGGCGAAGCCCCCAGTG CGTTTGTCTCGGGTGTTGTTTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10884:2280..2952+

>mRNA_S-firma_F_contig10884.1177.1 ID=mRNA_S-firma_F_contig10884.1177.1|Name=mRNA_S-firma_F_contig10884.1177.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=588bp|location=Sequence derived from alignment at S-firma_F_contig10884:2280..2952+ (Sphaerotrichia firma ET2_F female)
ATGTTGAAGCCTTTTTGCGTCGCGGTGTTGCTTGCCTGCGCTTTGGCCGG
GCGCCCGCATGTTTTCCTTGGACGTCCCCGCGGAGGCTTCCTTGGCTCCC
CGCCCGCCCCCGAGGGCTTCACACCCCCGGTCATTCAGACTTATGTTGAA
GCCTTTTTGCGTCGCGGTGTTGCTTGCCTGCGCTTTGGCCGGGCGCCCGC
ATGTTTTCCTTGGACGTCCCCGCGGAGGCTTCCTTGGCTCCCCGCCCGCC
CCCGAGGGCTTCACACCCCCGGTCATTCAGACTTATGCCAACCGCGTGGA
CCACTTTTCGCCAACGGACATTCGCACGTACAAGCAGCGGTTTGTCGTGA
ACGACACGTTTTATCAGGAAGGTGGCCCCCTCTTCATCAACATCAACGGC
GAAGCCCCCAGTGCGTTTGTCTCGGGTGTTGTTTGAATGCCAACCGCGTG
GACCACTTTTCGCCAACGGACATTCGCACGTACAAGCAGCGGTTTGTCGT
GAACGACACGTTTTATCAGGAAGGTGGCCCCCTCTTCATCAACATCAACG
GCGAAGCCCCCAGTGCGTTTGTCTCGGGTGTTGTTTGA
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