mRNA_S-firma_F_contig10884.1175.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10884.1175.1
Unique NamemRNA_S-firma_F_contig10884.1175.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10884.1175.1 vs. uniprot
Match: A0A7S2V6Y7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6Y7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.200e-18
Identity = 57/122 (46.72%), Postives = 87/122 (71.31%), Query Frame = 1
Query:   49 ALRQELAEQRKEQSSAVRAAKSAEHSQVSADHKLQRALDEVEHLKEALRAEREAKTD-------VARQV----RKAEKQKADLLTAFKKQLRLINILKRQKIHIEAAKLLSFSEEEFNKVLD 381
            ALRQ+LA Q++E ++A RA + ++    + D +L RAL++VE  K+A   +++ + D        AR++    R+ E+QK++L TAF+KQ++LI+ILKRQK+HIEAAKLL F+EEEF K+LD
Sbjct:   78 ALRQQLAAQKEELATAKRAMRQSDERAKALDLRLNRALEDVERYKKAACDQQDDRRDNSAQQQKTARELEAKCRRLERQKSELFTAFRKQMKLIDILKRQKVHIEAAKLLQFTEEEFLKILD 199          
BLAST of mRNA_S-firma_F_contig10884.1175.1 vs. uniprot
Match: A0A2K3DSS2_CHLRE (Uncharacterized protein n=4 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3DSS2_CHLRE)

HSP 1 Score: 85.9 bits (211), Expect = 3.970e-17
Identity = 62/139 (44.60%), Postives = 86/139 (61.87%), Query Frame = 1
Query:    1 LQKVKDEAGEAKATVKALRQELAEQRKEQSSAVRAAKSAEHSQVSADHKLQRALDEVEHLKEALRA----EREAKTDVARQV-------RKAEKQKADLLTAFKKQLRLINILKRQKIHIEAAKLLSFSEEEFNKVLDM 384
            L++ K +A +A+A  ++   ++ E  K  S A R  K+ E    + D +LQRAL+EVE  K+ L      EREAK   A          RK E+Q+ +L+TAFKKQL+LI +LKRQK+H+EAA+ L FSEEEF K L+M
Sbjct:  260 LERSKRQAADAEAAARSTEGQVRELAKADSRAERERKAVEAEVRARDIRLQRALEEVERYKQLLSEVRSQEREAKGSAAADTGRLLAENRKLERQRGELITAFKKQLKLIEVLKRQKVHLEAARALQFSEEEFMKTLEM 398          
BLAST of mRNA_S-firma_F_contig10884.1175.1 vs. uniprot
Match: A0A7S0SZ95_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SZ95_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 6.110e-17
Identity = 57/138 (41.30%), Postives = 86/138 (62.32%), Query Frame = 1
Query:    1 LQKVKDEAGEAKATVKALRQELAEQRKEQSSAVRAAKSAEHSQVSADHKLQRALDEVEHLKEALRAEREAKTD-----------VARQVRKAEKQKADLLTAFKKQLRLINILKRQKIHIEAAKLLSFSEEEFNKVLD 381
            ++K K  A  A+ + +A  +E AE R+E   A R AKS E    + D +L RAL+EVE  +  L A R+A              +A + ++ E+QK +L+ AFKKQ++LI++LK+QKIH+EAA++L F+EE+F K LD
Sbjct:  228 IEKEKHAAAAARVSAEARERECAELRRESERASRGAKSGEQEMKARDVRLNRALEEVERYRHQLEAARDASKGGDAGARQEAERLAGENKRLERQKTELVAAFKKQMKLIDVLKKQKIHMEAARMLQFAEEDFMKTLD 365          
BLAST of mRNA_S-firma_F_contig10884.1175.1 vs. uniprot
Match: UPI0004F0B90A (testis-expressed sequence 9 protein n=1 Tax=Merops nubicus TaxID=57421 RepID=UPI0004F0B90A)

HSP 1 Score: 83.2 bits (204), Expect = 8.650e-17
Identity = 61/137 (44.53%), Postives = 83/137 (60.58%), Query Frame = 1
Query:    4 QKVKDEAGEAKATVKALRQELAEQRKEQSSAVRAAKSAEHSQVSADHKLQRALDEVEHLKEALRAEREAKTDVARQV-----------RKAEKQKADLLTAFKKQLRLINILKRQKIHIEAAKLLSFSEEEFNKVLD 381
            +K K  + EA    + L+QE+    KE  +  R  K A  SQ + + +L RAL+E E  K  L   R+   DVA Q            +K +KQK +L+T FKKQL+LI+ILKRQK+H+EAAK+LSF+EEEF KVL+
Sbjct:  114 EKYKTLSQEANKKSEGLQQEVIALEKELENLRRVQKQAATSQSATEVRLNRALEEAERYKVELNKVRQTNKDVANQELKTIEELKMENKKLQKQKGELMTGFKKQLKLIDILKRQKMHLEAAKMLSFTEEEFMKVLE 250          
BLAST of mRNA_S-firma_F_contig10884.1175.1 vs. uniprot
Match: A0A150GM17_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GM17_GONPE)

HSP 1 Score: 79.7 bits (195), Expect = 3.620e-16
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 1
Query:   79 KEQSSAVRAAKSAEHSQVSADHKLQRALDEVEHLKEALRA----EREAKTDVARQV-------RKAEKQKADLLTAFKKQLRLINILKRQKIHIEAAKLLSFSEEEFNKVLDM 384
            K  S A R  ++AE    + D +LQRAL+EVE  K+ L      ER+AK   A+         RK E+Q+++L+TAFKKQL+LI +LKRQK+H+EAA+ L FSEEEF K L+M
Sbjct:   54 KADSRAERDRRAAEAEVRARDVRLQRALEEVERYKQLLNEVRAQERDAKGSAAQDTGRLLTENRKLERQRSELITAFKKQLKLIEVLKRQKVHLEAARALQFSEEEFLKTLEM 166          
BLAST of mRNA_S-firma_F_contig10884.1175.1 vs. uniprot
Match: UPI001B80D7A8 (testis-expressed protein 9 isoform X1 n=2 Tax=Onychostruthus taczanowskii TaxID=356909 RepID=UPI001B80D7A8)

HSP 1 Score: 83.2 bits (204), Expect = 3.960e-16
Identity = 61/138 (44.20%), Postives = 85/138 (61.59%), Query Frame = 1
Query:    1 LQKVKDEAGEAKATVKALRQELAEQRKEQSSAVRAAKSAEHSQVSADHKLQRALDEVEHLKEALRAEREAKTDVARQVRKA-----------EKQKADLLTAFKKQLRLINILKRQKIHIEAAKLLSFSEEEFNKVLD 381
            ++K K  + EA    + L+QE+    KE  S  RA K A  +Q + + +L RAL++VE  K  L   +++  DVA Q  K            +KQK +L+T FKKQL+LI+ILKRQK+HIEAAK+LSF+EEEF K L+
Sbjct:  274 IEKYKILSQEANKKTEELQQEVTALEKELESLKRAQKQAAATQSATEVRLNRALEDVEKYKVELNKLKQSNKDVANQELKTXXXXXXXXXXXQKQKGELITGFKKQLKLIDILKRQKMHIEAAKMLSFTEEEFMKALE 411          
BLAST of mRNA_S-firma_F_contig10884.1175.1 vs. uniprot
Match: UPI0013F274BF (testis-expressed protein 9-like n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=UPI0013F274BF)

HSP 1 Score: 77.8 bits (190), Expect = 5.490e-16
Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  109 KSAEHSQVSADHKLQRALDEVEHLKEALRAEREAKTDVARQV-----------RKAEKQKADLLTAFKKQLRLINILKRQKIHIEAAKLLSFSEEEFNKVLD 381
            K A  SQ + + +L RAL+E E  K  L   +++  D A Q            R+ EKQK +L+T FKKQL+LI+ILKRQK+HIEAAK+LSF+EEEF K L+
Sbjct:   10 KQASTSQSATEVRLNRALEEAERYKMELNKLKQSNKDTANQEHKKFEELKIANRRLEKQKGELMTGFKKQLKLIDILKRQKMHIEAAKMLSFTEEEFMKALE 111          
BLAST of mRNA_S-firma_F_contig10884.1175.1 vs. uniprot
Match: UPI001A944B42 (testis-expressed protein 9 isoform X6 n=4 Tax=Passeriformes TaxID=9126 RepID=UPI001A944B42)

HSP 1 Score: 80.5 bits (197), Expect = 5.530e-16
Identity = 59/129 (45.74%), Postives = 79/129 (61.24%), Query Frame = 1
Query:   28 EAKATVKALRQELAEQRKEQSSAVRAAKSAEHSQVSADHKLQRALDEVEHLKEALRAEREAKTDVARQVRKAE-----------KQKADLLTAFKKQLRLINILKRQKIHIEAAKLLSFSEEEFNKVLD 381
            EA    + L+QE+    KE  +  RA K A  +Q + + +L RAL+EVE  K  L   +++  DVA Q  K             KQK +L+T FKKQL+LI+ILKRQK+HIEAAK+LSF+EEEF K L+
Sbjct:   92 EANKKTEGLQQEVTALEKELENLKRAQKQAAAAQSATEVRLNRALEEVEKYKVELDKLKQSNKDVANQELKTXXXXXXXXXXXXKQKGELITGFKKQLKLIDILKRQKMHIEAAKMLSFTEEEFMKALE 220          
BLAST of mRNA_S-firma_F_contig10884.1175.1 vs. uniprot
Match: A0A6I9Z8R8_GEOFO (testis-expressed protein 9 n=2 Tax=Passeriformes TaxID=9126 RepID=A0A6I9Z8R8_GEOFO)

HSP 1 Score: 82.4 bits (202), Expect = 6.980e-16
Identity = 61/138 (44.20%), Postives = 84/138 (60.87%), Query Frame = 1
Query:    1 LQKVKDEAGEAKATVKALRQELAEQRKEQSSAVRAAKSAEHSQVSADHKLQRALDEVEHLKEALRAEREAKTDVARQVRKAE-----------KQKADLLTAFKKQLRLINILKRQKIHIEAAKLLSFSEEEFNKVLD 381
            ++K K  + EA    + L+QE+    KE  S  RA K A  +Q + + +L RAL+EVE  K  L   +++  DVA Q  K             KQK +L+T FKKQL+LI+ILKRQK+HIEAA++LSF+EEEF K L+
Sbjct:  258 IEKYKMLSQEANKKTEGLQQEVTALEKELESVKRAQKQAAATQSATEVRLNRALEEVEKYKVELNKLKQSNKDVANQELKXXXXXXXXXXXXXKQKGELITGFKKQLKLIDILKRQKMHIEAARMLSFTEEEFMKALE 395          
BLAST of mRNA_S-firma_F_contig10884.1175.1 vs. uniprot
Match: A0A2I0M706_COLLI (Testis expressed 9 n=2 Tax=Columba livia TaxID=8932 RepID=A0A2I0M706_COLLI)

HSP 1 Score: 82.4 bits (202), Expect = 7.110e-16
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 1
Query:   28 EAKATVKALRQELAEQRKEQSSAVRAAKSAEHSQVSADHKLQRALDEVEHLKEALRAEREAKTDVARQV-----------RKAEKQKADLLTAFKKQLRLINILKRQKIHIEAAKLLSFSEEEFNKVLD 381
            EAK   + L+QE+    KE  +  R  K A  SQ + + +L RAL+E E  K  L   +++  D+A Q            +K +KQK +L+T FKKQL+LI+ILKRQK+HIEAAK+LSF+EEEF K L+
Sbjct:  272 EAKKKSEGLQQEVISLEKELETLKRVQKQAASSQSATEVRLNRALEEAEKYKVELNRLKQSAKDIASQELKTIEELKAENKKLQKQKGELITGFKKQLKLIDILKRQKLHIEAAKMLSFTEEEFMKALE 400          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10884.1175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V6Y7_9STRA2.200e-1846.72Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2K3DSS2_CHLRE3.970e-1744.60Uncharacterized protein n=4 Tax=Chlamydomonas TaxI... [more]
A0A7S0SZ95_9CHLO6.110e-1741.30Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
UPI0004F0B90A8.650e-1744.53testis-expressed sequence 9 protein n=1 Tax=Merops... [more]
A0A150GM17_GONPE3.620e-1648.67Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
UPI001B80D7A83.960e-1644.20testis-expressed protein 9 isoform X1 n=2 Tax=Onyc... [more]
UPI0013F274BF5.490e-1649.02testis-expressed protein 9-like n=1 Tax=Chelonoidi... [more]
UPI001A944B425.530e-1645.74testis-expressed protein 9 isoform X6 n=4 Tax=Pass... [more]
A0A6I9Z8R8_GEOFO6.980e-1644.20testis-expressed protein 9 n=2 Tax=Passeriformes T... [more]
A0A2I0M706_COLLI7.110e-1644.96Testis expressed 9 n=2 Tax=Columba livia TaxID=893... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10884contigS-firma_F_contig10884:164..668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog3055.EDO99962
Max annot lvl3041|Chlorophyta
Evalue6.1e-18
EggNOG OGs28H83@1|root,2QPKV@2759|Eukaryota,37XWR@33090|Viridiplantae,34IUJ@3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons3
Model size393
Cds size393
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10884.1175.1prot_S-firma_F_contig10884.1175.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10884 164..668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.0648794-CDS-S-firma_F_contig10884:163..3311622815632.0648794-CDS-S-firma_F_contig10884:163..331Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10884 164..331 +
1696949467.0531824-CDS-S-firma_F_contig10884:163..3311696949467.0531824-CDS-S-firma_F_contig10884:163..331Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10884 164..331 +
1622815632.0809038-CDS-S-firma_F_contig10884:389..5451622815632.0809038-CDS-S-firma_F_contig10884:389..545Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10884 390..545 +
1696949467.0634813-CDS-S-firma_F_contig10884:389..5451696949467.0634813-CDS-S-firma_F_contig10884:389..545Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10884 390..545 +
1622815632.090851-CDS-S-firma_F_contig10884:599..6681622815632.090851-CDS-S-firma_F_contig10884:599..668Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10884 600..668 +
1696949467.0718248-CDS-S-firma_F_contig10884:599..6681696949467.0718248-CDS-S-firma_F_contig10884:599..668Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10884 600..668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10884.1175.1

>prot_S-firma_F_contig10884.1175.1 ID=prot_S-firma_F_contig10884.1175.1|Name=mRNA_S-firma_F_contig10884.1175.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=131bp
LQKVKDEAGEAKATVKALRQELAEQRKEQSSAVRAAKSAEHSQVSADHKL
QRALDEVEHLKEALRAEREAKTDVARQVRKAEKQKADLLTAFKKQLRLIN
ILKRQKIHIEAAKLLSFSEEEFNKVLDMEL*
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mRNA from alignment at S-firma_F_contig10884:164..668+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10884.1175.1 ID=mRNA_S-firma_F_contig10884.1175.1|Name=mRNA_S-firma_F_contig10884.1175.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=505bp|location=Sequence derived from alignment at S-firma_F_contig10884:164..668+ (Sphaerotrichia firma ET2_F female)
TTGCAAAAGGTGAAGGACGAAGCCGGTGAAGCCAAGGCGACGGTGAAGGC GTTGCGGCAGGAACTTGCCGAGCAGCGCAAGGAGCAGTCCAGCGCTGTGC GGGCGGCAAAGTCGGCGGAACACTCGCAGGTATCTGCGGACCACAAGCTG CAGCGGGCCCTTGACGAGGTGTGAGGTTGTTGTGCTCATGGCTTGTTTGT CTTGTCGTGACCAAGGTGTGGGGCAGGTGGAGCACTTGAAGGAAGCCCTC CGAGCGGAGCGTGAAGCCAAAACTGATGTCGCCCGCCAAGTCCGCAAAGC CGAGAAGCAAAAGGCTGACCTATTGACGGCGTTCAAGAAGCAGCTCCGCT TGATCAACATTCTGAAGCGCCAAAAGATTCACGTGCGCCCCTTGTTGTTG GTGCTGACTGCTCCCCAGCTCATGCCCACTCCACAGATTGAGGCCGCCAA GCTGCTGTCGTTTTCGGAGGAGGAGTTCAATAAGGTGCTTGACATGGAGC TGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10884:164..668+

>mRNA_S-firma_F_contig10884.1175.1 ID=mRNA_S-firma_F_contig10884.1175.1|Name=mRNA_S-firma_F_contig10884.1175.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=786bp|location=Sequence derived from alignment at S-firma_F_contig10884:164..668+ (Sphaerotrichia firma ET2_F female)
TTGCAAAAGGTGAAGGACGAAGCCGGTGAAGCCAAGGCGACGGTGAAGGC
GTTGCGGCAGGAACTTGCCGAGCAGCGCAAGGAGCAGTCCAGCGCTGTGC
GGGCGGCAAAGTCGGCGGAACACTCGCAGGTATCTGCGGACCACAAGCTG
CAGCGGGCCCTTGACGAGTTGCAAAAGGTGAAGGACGAAGCCGGTGAAGC
CAAGGCGACGGTGAAGGCGTTGCGGCAGGAACTTGCCGAGCAGCGCAAGG
AGCAGTCCAGCGCTGTGCGGGCGGCAAAGTCGGCGGAACACTCGCAGGTA
TCTGCGGACCACAAGCTGCAGCGGGCCCTTGACGAGGTGGAGCACTTGAA
GGAAGCCCTCCGAGCGGAGCGTGAAGCCAAAACTGATGTCGCCCGCCAAG
TCCGCAAAGCCGAGAAGCAAAAGGCTGACCTATTGACGGCGTTCAAGAAG
CAGCTCCGCTTGATCAACATTCTGAAGCGCCAAAAGATTCACGTGGAGCA
CTTGAAGGAAGCCCTCCGAGCGGAGCGTGAAGCCAAAACTGATGTCGCCC
GCCAAGTCCGCAAAGCCGAGAAGCAAAAGGCTGACCTATTGACGGCGTTC
AAGAAGCAGCTCCGCTTGATCAACATTCTGAAGCGCCAAAAGATTCACAT
TGAGGCCGCCAAGCTGCTGTCGTTTTCGGAGGAGGAGTTCAATAAGGTGC
TTGACATGGAGCTGTAGATTGAGGCCGCCAAGCTGCTGTCGTTTTCGGAG
GAGGAGTTCAATAAGGTGCTTGACATGGAGCTGTAG
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