mRNA_S-firma_F_contig10880.1173.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10880.1173.1
Unique NamemRNA_S-firma_F_contig10880.1173.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10880.1173.1 vs. uniprot
Match: D7G7E6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E6_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 9.260e-10
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 ADAPGGDDLESAWLLQSRLLSSIARVVSTAPVAVQQLFDLG 123
            ADAP G+ LE  WL+QSRLLSSIARVVSTAPVAVQQLFDLG
Sbjct:  471 ADAPEGE-LEPGWLMQSRLLSSIARVVSTAPVAVQQLFDLG 510
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10880.1173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7E6_ECTSI9.260e-1085.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10880contigS-firma_F_contig10880:3661..4845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size408
Cds size408
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10880.1173.1prot_S-firma_F_contig10880.1173.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10880 3661..4845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.884892-CDS-S-firma_F_contig10880:3660..38881622815631.884892-CDS-S-firma_F_contig10880:3660..3888Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10880 3661..3888 -
1696949466.9559264-CDS-S-firma_F_contig10880:3660..38881696949466.9559264-CDS-S-firma_F_contig10880:3660..3888Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10880 3661..3888 -
1622815631.8964293-CDS-S-firma_F_contig10880:3945..40041622815631.8964293-CDS-S-firma_F_contig10880:3945..4004Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10880 3946..4004 -
1696949466.9664774-CDS-S-firma_F_contig10880:3945..40041696949466.9664774-CDS-S-firma_F_contig10880:3945..4004Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10880 3946..4004 -
1622815631.9108417-CDS-S-firma_F_contig10880:4724..48451622815631.9108417-CDS-S-firma_F_contig10880:4724..4845Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10880 4725..4845 -
1696949466.9760294-CDS-S-firma_F_contig10880:4724..48451696949466.9760294-CDS-S-firma_F_contig10880:4724..4845Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10880 4725..4845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10880.1173.1

>prot_S-firma_F_contig10880.1173.1 ID=prot_S-firma_F_contig10880.1173.1|Name=mRNA_S-firma_F_contig10880.1173.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=136bp
ADAPGGDDLESAWLLQSRLLSSIARVVSTAPVAVQQLFDLGLPSLLRRIL
SDYVWCGDLTGKSMRNRAMTWEPRPLAHERVGEERLLAALGVAAAMLPPP
PPPPPPRAALVSAAAAAASHEAAAAAAAAAAAAAAA
back to top

mRNA from alignment at S-firma_F_contig10880:3661..4845-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10880.1173.1 ID=mRNA_S-firma_F_contig10880.1173.1|Name=mRNA_S-firma_F_contig10880.1173.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1185bp|location=Sequence derived from alignment at S-firma_F_contig10880:3661..4845- (Sphaerotrichia firma ET2_F female)
GCGGACGCTCCGGGCGGCGACGACCTCGAGTCCGCCTGGCTCCTGCAGTC
GCGCCTCCTGTCGTCGATCGCGCGCGTCGTGTCTACGGCCCCCGTCGCGG
TGCAGCAGCTCTTCGACCTCGGTAGGTACAGGTGTTCTTGCTCTGTCCGC
CGCTGTAAGGTCCGAACTGTCCTGTACAGAACATAGCCGCATGATCAAGC
GTATTGTAGATAAGTGTTCTTGGTATACCAGCTCTTCGGCGTCAGTGTCT
CAGTATGTCTCTTCCCTTGTTGCTTGCTCTACCGCTCTAGGGTGCACGAT
TCACCTAGCGTAGGTGTTCTTGGTCTACCGGCTCTTTGGTGTCTCCTCCC
TTGTTGCTTGCTCTACCGCTCTACAGTAGTAGGGTGCACACTGTTTTGGT
CTACCGGCTCTTCGGCTTCAGTGTCTCAGTATGTCTCCACCCTTGTTGCT
TGCTCTGCCGCTCTTCAGTAGGGTGCAAACTGGCCGCACACAATCGATTG
TTTAGGCGGCGGTCTAGTGTAGTGTTCCTACGTCGCCTCCCCCTGCCCTT
CCTGGTGGCTTTGCTTGCGAATCCCGGCGCGCTGCACTACGGGGGTCCTG
GAACGCATGGGCCTTGCCACGGTTGCGCTGTGTTGTCTACCCTGAGTTTG
TGCACGGTGCCGATACCTGCCCCGGCAGTGTCGTTATTTCCCCCCCACCG
CGCCCCCGTCTATCCCGGGTCTGCTCCTGATTTACCTCAACCTCGGTTGT
GTTGACTGTCTTTCCCGTCCGTGGTATTGATACCCGCCACCCCCCGATCG
TGCCCGAAATTACCGTTTCTCGCCCCCCGCTCTTTCCATAGGTCTGCCGT
CCCTGCTGCGGCGCATCCTGTCGGACTACGTGTGGTGCGGTGACTTGACT
GTGTGCTCGGTCTCCAATGGGCCGGCGAAGGGGGCGGGGGCGGGGGCAGG
CGCCGAGGGAAAGTCCATGAGAAACAGGGCGATGACGTGGGAGCCGAGGC
CGTTGGCCCACGAGCGGGTCGGGGAGGAGCGGTTGCTCGCCGCGCTCGGC
GTCGCGGCGGCCATGCTCCCGCCGCCGCCGCCTCCCCCGCCGCCGCGGGC
AGCGCTTGTCTCGGCCGCGGCCGCCGCTGCAAGCCACGAGGCGGCCGCGG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10880:3661..4845-

>mRNA_S-firma_F_contig10880.1173.1 ID=mRNA_S-firma_F_contig10880.1173.1|Name=mRNA_S-firma_F_contig10880.1173.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=816bp|location=Sequence derived from alignment at S-firma_F_contig10880:3661..4845- (Sphaerotrichia firma ET2_F female)
GCGGACGCTCCGGGCGGCGACGACCTCGAGTCCGCCTGGCTCCTGCAGTC
GCGCCTCCTGTCGTCGATCGCGCGCGTCGTGTCTACGGCCCCCGTCGCGG
TGCAGCAGCTCTTCGACCTCGGCGGACGCTCCGGGCGGCGACGACCTCGA
GTCCGCCTGGCTCCTGCAGTCGCGCCTCCTGTCGTCGATCGCGCGCGTCG
TGTCTACGGCCCCCGTCGCGGTGCAGCAGCTCTTCGACCTCGGTCTGCCG
TCCCTGCTGCGGCGCATCCTGTCGGACTACGTGTGGTGCGGTGACTTGAC
TGTCTGCCGTCCCTGCTGCGGCGCATCCTGTCGGACTACGTGTGGTGCGG
TGACTTGACTGGAAAGTCCATGAGAAACAGGGCGATGACGTGGGAGCCGA
GGCCGTTGGCCCACGAGCGGGTCGGGGAGGAGCGGTTGCTCGCCGCGCTC
GGCGTCGCGGCGGCCATGCTCCCGCCGCCGCCGCCTCCCCCGCCGCCGCG
GGCAGCGCTTGTCTCGGCCGCGGCCGCCGCTGCAAGCCACGAGGCGGCCG
CGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAAAGTCCATG
AGAAACAGGGCGATGACGTGGGAGCCGAGGCCGTTGGCCCACGAGCGGGT
CGGGGAGGAGCGGTTGCTCGCCGCGCTCGGCGTCGCGGCGGCCATGCTCC
CGCCGCCGCCGCCTCCCCCGCCGCCGCGGGCAGCGCTTGTCTCGGCCGCG
GCCGCCGCTGCAAGCCACGAGGCGGCCGCGGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCG
back to top