mRNA_S-firma_F_contig1088.1168.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1088.1168.1
Unique NamemRNA_S-firma_F_contig1088.1168.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1088.1168.1 vs. uniprot
Match: RL391_ARATH (60S ribosomal protein L39-1 n=6 Tax=Brassicaceae TaxID=3700 RepID=RL391_ARATH)

HSP 1 Score: 55.1 bits (131), Expect = 9.540e-7
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = -2 
Query:  806 KVTLGKKMKQNRPIPHWIRLRTDNTIR 886
            K  LGKKM+QNRPIPHWIRLRTDNTIR
Sbjct:   10 KKKLGKKMRQNRPIPHWIRLRTDNTIR 36
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BLAST of mRNA_S-firma_F_contig1088.1168.1 vs. uniprot
Match: A0A565CAR9_9BRAS (Uncharacterized protein n=14 Tax=Mesangiospermae TaxID=1437183 RepID=A0A565CAR9_9BRAS)

HSP 1 Score: 55.1 bits (131), Expect = 9.990e-7
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = -2 
Query:  806 KVTLGKKMKQNRPIPHWIRLRTDNTIR 886
            K  LGKKM+QNRPIPHWIRLRTDNTIR
Sbjct:   12 KKKLGKKMRQNRPIPHWIRLRTDNTIR 38
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BLAST of mRNA_S-firma_F_contig1088.1168.1 vs. uniprot
Match: A0A2K1KDY3_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KDY3_PHYPA)

HSP 1 Score: 55.5 bits (132), Expect = 1.630e-6
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = -2 
Query:  806 KVTLGKKMKQNRPIPHWIRLRTDNTIR 886
            K  LGKKMKQNRPIPHWIR+RTDNTIR
Sbjct:   45 KKKLGKKMKQNRPIPHWIRMRTDNTIR 71
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BLAST of mRNA_S-firma_F_contig1088.1168.1 vs. uniprot
Match: R0FYV5_9BRAS (Uncharacterized protein (Fragment) n=1 Tax=Capsella rubella TaxID=81985 RepID=R0FYV5_9BRAS)

HSP 1 Score: 55.1 bits (131), Expect = 1.790e-6
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = -2 
Query:  806 KVTLGKKMKQNRPIPHWIRLRTDNTIR 886
            K  LGKKM+QNRPIPHWIRLRTDNTIR
Sbjct:   36 KKKLGKKMRQNRPIPHWIRLRTDNTIR 62
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BLAST of mRNA_S-firma_F_contig1088.1168.1 vs. uniprot
Match: A0A199VEH0_ANACO (60S ribosomal protein L39 n=45 Tax=cellular organisms TaxID=131567 RepID=A0A199VEH0_ANACO)

HSP 1 Score: 53.1 bits (126), Expect = 4.680e-6
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = -2 
Query:  806 KVTLGKKMKQNRPIPHWIRLRTDNTIR 886
            K+ L KKM+QNRPIPHWIR+RTDNTIR
Sbjct:   10 KMKLAKKMRQNRPIPHWIRMRTDNTIR 36
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BLAST of mRNA_S-firma_F_contig1088.1168.1 vs. uniprot
Match: A0A0D3BLW0_BRAOL (Uncharacterized protein n=9 Tax=rosids TaxID=71275 RepID=A0A0D3BLW0_BRAOL)

HSP 1 Score: 52.8 bits (125), Expect = 6.440e-6
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = -2 
Query:  806 KVTLGKKMKQNRPIPHWIRLRTDNTIR 886
            K  L KKM+QNRPIPHWIRLRTDNTIR
Sbjct:   10 KKKLAKKMRQNRPIPHWIRLRTDNTIR 36
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BLAST of mRNA_S-firma_F_contig1088.1168.1 vs. uniprot
Match: A0A0A0LYE1_CUCSA (Uncharacterized protein n=9 Tax=fabids TaxID=91835 RepID=A0A0A0LYE1_CUCSA)

HSP 1 Score: 52.8 bits (125), Expect = 6.440e-6
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = -2 
Query:  806 KVTLGKKMKQNRPIPHWIRLRTDNTIR 886
            K  L KKM+QNRPIPHWIRLRTDNTIR
Sbjct:   10 KKKLAKKMRQNRPIPHWIRLRTDNTIR 36
[Close]
BLAST of mRNA_S-firma_F_contig1088.1168.1 vs. uniprot
Match: A0A6A1UWI8_9ROSI (60S ribosomal protein L39-1 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1UWI8_9ROSI)

HSP 1 Score: 52.8 bits (125), Expect = 7.410e-6
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = -2 
Query:  806 KVTLGKKMKQNRPIPHWIRLRTDNTIR 886
            K  L KKM+QNRPIPHWIRLRTDNTIR
Sbjct:   16 KKKLAKKMRQNRPIPHWIRLRTDNTIR 42
[Close]
BLAST of mRNA_S-firma_F_contig1088.1168.1 vs. uniprot
Match: F4PA68_BATDJ (60S ribosomal protein L39 n=1 Tax=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) TaxID=684364 RepID=F4PA68_BATDJ)

HSP 1 Score: 52.8 bits (125), Expect = 8.980e-6
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = -2 
Query:  791 TKVTLGKKMKQNRPIPHWIRLRTDNTIR*ESDR 889
            TK  LGKK+KQNRP+P+WIR RTDNTIR  S R
Sbjct:   23 TKRILGKKLKQNRPLPNWIRFRTDNTIRYNSKR 55
[Close]
BLAST of mRNA_S-firma_F_contig1088.1168.1 vs. uniprot
Match: M4FG39_BRARP (Uncharacterized protein n=3 Tax=Pentapetalae TaxID=1437201 RepID=M4FG39_BRARP)

HSP 1 Score: 52.8 bits (125), Expect = 8.980e-6
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = -2 
Query:  806 KVTLGKKMKQNRPIPHWIRLRTDNTIR 886
            K  L KKM+QNRPIPHWIRLRTDNTIR
Sbjct:   10 KKKLAKKMRQNRPIPHWIRLRTDNTIR 36
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1088.1168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RL391_ARATH9.540e-788.8960S ribosomal protein L39-1 n=6 Tax=Brassicaceae T... [more]
A0A565CAR9_9BRAS9.990e-788.89Uncharacterized protein n=14 Tax=Mesangiospermae T... [more]
A0A2K1KDY3_PHYPA1.630e-688.89Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
R0FYV5_9BRAS1.790e-688.89Uncharacterized protein (Fragment) n=1 Tax=Capsell... [more]
A0A199VEH0_ANACO4.680e-681.4860S ribosomal protein L39 n=45 Tax=cellular organi... [more]
A0A0D3BLW0_BRAOL6.440e-685.19Uncharacterized protein n=9 Tax=rosids TaxID=71275... [more]
A0A0A0LYE1_CUCSA6.440e-685.19Uncharacterized protein n=9 Tax=fabids TaxID=91835... [more]
A0A6A1UWI8_9ROSI7.410e-685.1960S ribosomal protein L39-1 n=1 Tax=Morella rubra ... [more]
F4PA68_BATDJ8.980e-672.7360S ribosomal protein L39 n=1 Tax=Batrachochytrium... [more]
M4FG39_BRARP8.980e-685.19Uncharacterized protein n=3 Tax=Pentapetalae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1088contigS-firma_F_contig1088:12322..13211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size891
Cds size663
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.3909547-CDS-S-firma_F_contig1088:12321..129841622815631.3909547-CDS-S-firma_F_contig1088:12321..12984Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 12322..12984 +
1696949466.5805995-CDS-S-firma_F_contig1088:12321..129841696949466.5805995-CDS-S-firma_F_contig1088:12321..12984Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 12322..12984 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.404442-UTR-S-firma_F_contig1088:12984..132111622815631.404442-UTR-S-firma_F_contig1088:12984..13211Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1088 12985..13211 +
1696949466.5942361-UTR-S-firma_F_contig1088:12984..132111696949466.5942361-UTR-S-firma_F_contig1088:12984..13211Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1088 12985..13211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1088.1168.1prot_S-firma_F_contig1088.1168.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1088 12322..12984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1088.1168.1

>prot_S-firma_F_contig1088.1168.1 ID=prot_S-firma_F_contig1088.1168.1|Name=mRNA_S-firma_F_contig1088.1168.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=221bp
CNTVQARLGSQQLLSSCARCLSCSISSCKNSKRPSVRARPGLLAVPLTRA
RFDFATHVSAPCLFLHPSTKNPCAFPRPSIHTRGAAQLRAGRSAWDPKRP
VLPHNTSTTKNGHAWLPIHPVLSTLDHGTPLFAGFFHEGANDGPVIPQPA
SQRSRQHRHAATTHNRKTRERMRPGSPGARQSHSHESANTTVDIRRAERR
WHENAPPQPTDWPSVKAPCS*
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mRNA from alignment at S-firma_F_contig1088:12322..13211+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1088.1168.1 ID=mRNA_S-firma_F_contig1088.1168.1|Name=mRNA_S-firma_F_contig1088.1168.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=890bp|location=Sequence derived from alignment at S-firma_F_contig1088:12322..13211+ (Sphaerotrichia firma ET2_F female)
TGCAATACAGTACAAGCTCGGCTGGGCAGTCAGCAGCTGTTGAGTTCATG
CGCTCGTTGTTTGAGCTGCAGCATCAGCAGCTGCAAAAACAGCAAGCGTC
CGTCGGTGCGCGCGCGTCCAGGTTTGCTTGCCGTTCCACTGACACGCGCT
CGGTTCGATTTCGCGACCCACGTCTCCGCCCCGTGTTTATTTCTGCACCC
ATCAACGAAAAACCCATGCGCGTTCCCAAGACCAAGCATCCATACTAGAG
GGGCTGCACAACTACGGGCAGGGCGCTCGGCCTGGGACCCCAAACGCCCG
GTCCTTCCACACAACACCTCAACAACAAAAAATGGCCACGCGTGGTTGCC
TATCCACCCAGTTCTCTCTACCCTCGACCACGGAACGCCATTGTTTGCGG
GCTTCTTCCACGAAGGGGCTAATGATGGTCCTGTCATCCCTCAACCAGCC
AGCCAACGCAGTCGACAGCACCGCCATGCAGCGACCACGCACAACCGCAA
GACTCGCGAGCGCATGCGCCCAGGTAGCCCCGGCGCACGGCAATCGCACT
CCCATGAGTCTGCCAACACCACTGTAGACATTCGGCGGGCGGAGCGGCGC
TGGCACGAAAATGCACCTCCGCAGCCGACTGACTGGCCTTCCGTTAAAGC
GCCCTGCTCGTGAGGCGAGAGAGTTGGCCTAGCAGAGTATATGTACTGCT
GTCCGTTGGAAGGAAAAAACGAAAAAACACCATCGTTCTGACCCGGAGTT
TTCTTTTTATCGCCGGCACCCCCGCATCGGCGCCGACATCGCGGTCGCTC
TCTTACCGGATGGTGTTGTCCGTGCGGAGACGGATCCAGTGGGGGATCGG
CCTGTTCTGCTTCATCTTCTTGCCAAGGGTCACCTTGGTG
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Coding sequence (CDS) from alignment at S-firma_F_contig1088:12322..13211+

>mRNA_S-firma_F_contig1088.1168.1 ID=mRNA_S-firma_F_contig1088.1168.1|Name=mRNA_S-firma_F_contig1088.1168.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1326bp|location=Sequence derived from alignment at S-firma_F_contig1088:12322..13211+ (Sphaerotrichia firma ET2_F female)
TGCAATACAGTACAAGCTCGGCTGGGCAGTCAGCAGCTGTTGAGTTCATG
CGCTCGTTGTTTGAGCTGCAGCATCAGCAGCTGCAAAAACAGCAAGCGTC
CGTCGGTGCGCGCGCGTCCAGGTTTGCTTGCCGTTCCACTGACACGCGCT
CGGTTCGATTTCGCGACCCACGTCTCCGCCCCGTGTTTATTTCTGCACCC
ATCAACGAAAAACCCATGCGCGTTCCCAAGACCAAGCATCCATACTAGAG
GGGCTGCACAACTACGGGCAGGGCGCTCGGCCTGGGACCCCAAACGCCCG
GTCCTTCCACACAACACCTCAACAACAAAAAATGGCCACGCGTGGTTGCC
TATCCACCCAGTTCTCTCTACCCTCGACCACGGAACGCCATTGTTTGCGG
GCTTCTTCCACGAAGGGGCTAATGATGGTCCTGTCATCCCTCAACCAGCC
AGCCAACGCAGTCGACAGCACCGCCATGCAGCGACCACGCACAACCGCAA
GACTCGCGAGCGCATGCGCCCAGGTAGCCCCGGCGCACGGCAATCGCACT
CCCATGAGTCTGCCAACACCACTGTAGACATTCGGCGGGCGGAGCGGCGC
TGGCACGAAAATGCACCTCCGCAGCCGACTGACTGGCCTTCCGTTAAAGC
GCCCTGCTCGTGATGCAATACAGTACAAGCTCGGCTGGGCAGTCAGCAGC
TGTTGAGTTCATGCGCTCGTTGTTTGAGCTGCAGCATCAGCAGCTGCAAA
AACAGCAAGCGTCCGTCGGTGCGCGCGCGTCCAGGTTTGCTTGCCGTTCC
ACTGACACGCGCTCGGTTCGATTTCGCGACCCACGTCTCCGCCCCGTGTT
TATTTCTGCACCCATCAACGAAAAACCCATGCGCGTTCCCAAGACCAAGC
ATCCATACTAGAGGGGCTGCACAACTACGGGCAGGGCGCTCGGCCTGGGA
CCCCAAACGCCCGGTCCTTCCACACAACACCTCAACAACAAAAAATGGCC
ACGCGTGGTTGCCTATCCACCCAGTTCTCTCTACCCTCGACCACGGAACG
CCATTGTTTGCGGGCTTCTTCCACGAAGGGGCTAATGATGGTCCTGTCAT
CCCTCAACCAGCCAGCCAACGCAGTCGACAGCACCGCCATGCAGCGACCA
CGCACAACCGCAAGACTCGCGAGCGCATGCGCCCAGGTAGCCCCGGCGCA
CGGCAATCGCACTCCCATGAGTCTGCCAACACCACTGTAGACATTCGGCG
GGCGGAGCGGCGCTGGCACGAAAATGCACCTCCGCAGCCGACTGACTGGC
CTTCCGTTAAAGCGCCCTGCTCGTGA
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