mRNA_S-firma_F_contig1088.1166.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1088.1166.1
Unique NamemRNA_S-firma_F_contig1088.1166.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1088.1166.1 vs. uniprot
Match: D8LSX2_ECTSI (Similar to intersectin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX2_ECTSI)

HSP 1 Score: 422 bits (1084), Expect = 2.020e-135
Identity = 247/383 (64.49%), Postives = 270/383 (70.50%), Query Frame = 1 
Query:  508 PRPGPLAFVGAVATGAAIASVVGPPPRRRYPPPRAGYIYVVQQGQGA--GAAAPRAVRAEEASFIIRRVTVASYRTDAGGAVLFEVQVTMNDGYKYGVLRRYSQFDQLRERVAPIVRTVTPPFPPKNNIRSATVGLQPADLEERRSMLQGWLQSLCTAATTNTVALRVPLYDFLETAAYYPXXXXXXXXXXXXXXXXXXXXXAGATGAAATATATPAS--AIDGVPYATATPYAETLPTAAQGAGATAFTHPNLPPEVPRMAKPDPAAASGGGNDGWAVPLESREASDLKLAMTGPDASGRLTGAQAAEALKTGTGAGSEDLRAVWELSDIDRDGMLDRDEFAVAWYLAHQAAAGNKPPSSLPADVVPPSKRKGATRSSANPF 1644
            P PGPL  VGA+ATGAAIA+VVG           AGYIYVVQ+ Q    G A PRAVRA E  FII RV +ASYRT  GG VLFEVQ+TMNDGYKYGVLRRYSQFDQLRERV+ ++RT TPPFPPK++IRS+TVGL PADLEERR MLQ WLQSLCTAA+ NT ALRVPLYDFLETA YYP                       A  A  TA ATPA+  A  GVP A A  YAE LP AA   G        +P   P   KPD          GWAVP ESR+ASDLK+AM GP A+G+LTG QAA AL+TGTGAG EDLRAVW LSDID+DGMLDRDEFAVAWYLAHQAAAGNKPP+SLPAD+VPPSKR+ A  S ANPF
Sbjct:   40 PGPGPLGLVGALATGAAIAAVVGXXXXXXXXXXXAGYIYVVQEPQSGQVGHAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQITMNDGYKYGVLRRYSQFDQLRERVSRVIRTTTPPFPPKSSIRSSTVGLGPADLEERRQMLQAWLQSLCTAASANTPALRVPLYDFLETAMYYPPEAPVTSSDPT------------AASAQHTAVATPAATTATTGVPVAAA--YAEALPPAAGTKGV------GVPSAGPLPPKPDSTGY------GWAVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWALSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQAAQHSLANPF 396
[Close]
BLAST of mRNA_S-firma_F_contig1088.1166.1 vs. uniprot
Match: A0A6H5JHJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ6_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 3.170e-70
Identity = 149/239 (62.34%), Postives = 164/239 (68.62%), Query Frame = 1 
Query:  940 MLQGWLQSLCTAATTNTVALRVPLYDFLETAAYYPXXXXXXXXXXXXXXXXXXXXXAGATGAAATATATPAS--AIDGVPYATATPYAETLPTAA--QGAGATAFTHPNLPPEVPRMAKPDPAAASGGGNDGWAVPLESREASDLKLAMTGPDASGRLTGAQAAEALKTGTGAGSEDLRAVWELSDIDRDGMLDRDEFAVAWYLAHQAAAGNKPPSSLPADVVPPSKRKGATRSSANPF 1644
            MLQ WLQSLCTAA+TNT ALRVPLYDFLETA+YYP                          A  TA ATPA+  A  GVP A A  YAE LP AA  +G G ++   P  PP      KPD A       DGWAVP ESR+ASDLK+AM GP A+G+LTG QAA AL+TGTGAG EDLRAVW LSDID+DGMLDRDEFAVAWYLAHQAAAGNKPP+SLPAD+VPPSKR+ A  S ANPF
Sbjct:    1 MLQAWLQSLCTAASTNTPALRVPLYDFLETASYYPPEAPVTSSDPTT------------ASAQHTAVATPAATTATTGVPVAAA--YAEALPPAAGTKGVGVSSAGPP--PP------KPDSA------EDGWAVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWALSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQAAQHSLANPF 211
[Close]
BLAST of mRNA_S-firma_F_contig1088.1166.1 vs. uniprot
Match: A0A6H5JJX9_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJX9_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 1.270e-45
Identity = 90/117 (76.92%), Postives = 98/117 (83.76%), Query Frame = 1 
Query:  589 RRYPPPRAGYIYVVQQGQ-GAGAAAPRAVRAEEASFIIRRVTVASYRTDAGGAVLFEVQVTMNDGYKYGVLRRYSQFDQLRERVAPIVRTVTPPFPPKNNIRSATVGLQPADLEERR 936
            +RYPPP AGYIYVVQ+ Q G   A PRAVRA E  FII RV +ASYRT  GG VLFEVQVTMNDGYKYGVLRRYSQFDQLRERV+ ++RT TPPFPPK +IRS+TVGL PADLEERR
Sbjct:    2 QRYPPPPAGYIYVVQEPQPGQVHAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQVTMNDGYKYGVLRRYSQFDQLRERVSRVIRTTTPPFPPKCSIRSSTVGLGPADLEERR 118
[Close]
BLAST of mRNA_S-firma_F_contig1088.1166.1 vs. uniprot
Match: A0A7S2SL29_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SL29_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 5.640e-14
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 1 
Query: 1396 RLTGAQAAEALKTGTGAGSEDLRAVWELSDIDRDGMLDRDEFAVAWYLAHQAAAGNKPPSSLPADVVPPSKR 1611
            +L+ AQ  +AL T TG   E LR+VWEL+DIDRDG LDRDEFAVA +L  QA AG+  P+SLP +VVPP KR
Sbjct:  218 KLSPAQVRDALMT-TGLPRETLRSVWELADIDRDGKLDRDEFAVAMFLCRQAQAGSALPASLPVEVVPPGKR 288
[Close]
BLAST of mRNA_S-firma_F_contig1088.1166.1 vs. uniprot
Match: A0A7S2F4E5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F4E5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 8.700e-14
Identity = 60/144 (41.67%), Postives = 79/144 (54.86%), Query Frame = 1 
Query: 1234 TAFTHPNLPPEVPR----MAKPDPAAAS---GGGNDGWAVPLESREASDLKLAMTGPDASGRLTGAQAAEALKTGTGAGSEDLRAVWELSDIDRDGMLDRDEFAVAWYLAHQAAAGNKPPSSLPADVVPPSKRKGATRSSANPF 1644
            +++T P   P V +    +AK   A+A+   G   + WAV     E + +  +  GP  +G+L+ AQ  EAL   TG     LR +WELSDID+DG LD DEFAVA YL  QA  G   P +LP+ VVPPSK+        NPF
Sbjct:   95 SSYTVPTPAPAVAQQQYPVAKTPVASAANPFGASTEEWAVAPYQAEFNQVFYSK-GPS-NGKLSPAQVREALMA-TGVAQGVLRCIWELSDIDKDGQLDMDEFAVAMYLCRQAQRGQPMPQALPSQVVPPSKKSYIV---GNPF 232
[Close]
BLAST of mRNA_S-firma_F_contig1088.1166.1 vs. uniprot
Match: A0A851DMA0_TODME (EPS15 factor (Fragment) n=1 Tax=Todus mexicanus TaxID=135184 RepID=A0A851DMA0_TODME)

HSP 1 Score: 75.5 bits (184), Expect = 3.450e-12
Identity = 50/107 (46.73%), Postives = 58/107 (54.21%), Query Frame = 1 
Query: 1324 WAVPLESREASDLKLAMTGPDASGRLTGAQAAEALKTGTGAGSEDLRAVWELSDIDRDGMLDRDEFAVAWYLAHQAAAGNKPPSSLPADVVPPSKRKGATRSSANPF 1644
            WAV LE +   D       P  +G L+G +    L        + L  VWELSDIDRDGMLDRDEFAVA +L + A      P SLPA +VPPSKRK  T   A P 
Sbjct:   19 WAVKLEDKAKYDAIFDSLNP-VNGLLSGDKVKPVLLNSK-LPVDILGRVWELSDIDRDGMLDRDEFAVAMFLVYCALEKEPVPMSLPAALVPPSKRKPITIPGAMPL 123
[Close]
BLAST of mRNA_S-firma_F_contig1088.1166.1 vs. uniprot
Match: A0A6B2L2G6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L2G6_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 1.090e-11
Identity = 47/122 (38.52%), Postives = 71/122 (58.20%), Query Frame = 1 
Query: 1261 PEVPRMAKP----DPAAASGGGNDGWAVPLESREASDLKLAMTGPDASGRLTGAQAAEALKTGTGAGSEDLRAVWELSDIDRDGMLDRDEFAVAWYLAHQAAAGNKPPSSLPADVVPPSKRK 1614
            P++ ++ +P    DP + +   + GW V  +++ A D      GP  +G+++G  A E L   TG  +  LR +WELSD ++DG LD +EFA+A +L  +   G K P  LPA +VPPSKRK
Sbjct:  368 PQLMKLVQPPKSEDPKSTNPFADSGWDVKADAKAAYDQIFHSLGPK-NGKISGNVARETL-VNTGIETTLLRKIWELSDFEKDGQLDAEEFALALHLTEEVKMGRKVPDVLPASLVPPSKRK 487
[Close]
BLAST of mRNA_S-firma_F_contig1088.1166.1 vs. uniprot
Match: A0A7S3URG0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URG0_HETAK)

HSP 1 Score: 72.8 bits (177), Expect = 1.530e-11
Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 1 
Query: 1438 TGAGSEDLRAVWELSDIDRDGMLDRDEFAVAWYLAHQAAA-GNKPPS--SLPADVVPPSKR--KGATRSSANPF 1644
            TGA ++ L  VWELSD+DRDG LDR+EFAVA YLA + AA G   P+  SLPA +VPPS+R    A+ S+ NPF
Sbjct:   52 TGADAQALAQVWELSDLDRDGALDREEFAVAHYLAAEVAAKGGALPAGPSLPAALVPPSRRGRPAASASANNPF 125
[Close]
BLAST of mRNA_S-firma_F_contig1088.1166.1 vs. uniprot
Match: A0A0L0D9J8_THETB (EH domain-containing protein 3 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D9J8_THETB)

HSP 1 Score: 78.6 bits (192), Expect = 2.850e-11
Identity = 54/127 (42.52%), Postives = 73/127 (57.48%), Query Frame = 1 
Query: 1270 PRMAKPDPAAASGGGNDGWAVPLESREASDLKLAMTGPDASGRLTGAQAAEALKTGTGAGSEDLRAVWELSDIDRDGMLDRDEFAVAWYLAHQA--AAGNKPPSSLPADVVPPSKRKGATRSSANPF 1644
            P    P+P  AS   +  WA+  E ++  D      GP A G+L+GA A  A+   +   +  LR +W L+DIDRDG LD DEFAV  +L  Q   A G+  P++LPA++VPPSKR G   S A+PF
Sbjct:  406 PSSPPPNPFGAS---DSDWAIGPEEKQKWDSYFVKMGPVA-GKLSGASAKPAM-VASKLDTTTLRDIWTLADIDRDGHLDADEFAVCMHLLQQKKNAPGSPLPTALPANLVPPSKRGG---SEASPF 524
[Close]
BLAST of mRNA_S-firma_F_contig1088.1166.1 vs. uniprot
Match: A0A4W5P9S3_9TELE (Epidermal growth factor receptor pathway substrate 15 n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5P9S3_9TELE)

HSP 1 Score: 78.2 bits (191), Expect = 3.660e-11
Identity = 54/123 (43.90%), Postives = 66/123 (53.66%), Query Frame = 1 
Query: 1252 NLPPEVPRMAKPDPAAASGGGN-DG-WAVPLESREASDLKLAMTGPDASGRLTGAQAAEALKTGTGAGSEDLRAVWELSDIDRDGMLDRDEFAVAWYLAHQAAAGNKPPSSLPADVVPPSKRK 1614
            NL   +P+          GG + DG W V +E +   D       P  SG L+G +    L        + L  VWELSD+DRDGMLDRDEFAVA YL ++A  G   P SLPA +VPPSKRK
Sbjct:   95 NLAVSLPKFHDTSSPLLPGGVSVDGQWVVKMEEKLKFDAVFDSLSP-VSGMLSGEKVKPVLLNSK-LPVDVLGRVWELSDLDRDGMLDRDEFAVAMYLVYRALEGESVPMSLPAPLVPPSKRK 215
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1088.1166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSX2_ECTSI2.020e-13564.49Similar to intersectin 2 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JHJ6_9PHAE3.170e-7062.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJX9_9PHAE1.270e-4576.92PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S2SL29_9STRA5.640e-1462.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2F4E5_9STRA8.700e-1441.67Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A851DMA0_TODME3.450e-1246.73EPS15 factor (Fragment) n=1 Tax=Todus mexicanus Ta... [more]
A0A6B2L2G6_9EUKA1.090e-1138.52Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A7S3URG0_HETAK1.530e-1158.11Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0L0D9J8_THETB2.850e-1142.52EH domain-containing protein 3 n=1 Tax=Thecamonas ... [more]
A0A4W5P9S3_9TELE3.660e-1143.90Epidermal growth factor receptor pathway substrate... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1088contigS-firma_F_contig1088:6946..11720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LSX2
PFAMsC2,EF-hand_4,PH_13,RhoGEF,SH3_1
Max annot lvl2759|Eukaryota
KEGG koko:K12472
KEGG Pathwayko04144,map04144
Evalue3.12e-143
EggNOG OGsKOG0998@1|root,KOG0998@2759|Eukaryota
Descriptionendocytosis
COG categoryS
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-26_001740.1
Exons5
Model size2985
Cds size1263
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.5672028-UTR-S-firma_F_contig1088:6945..73291622815631.5672028-UTR-S-firma_F_contig1088:6945..7329Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1088 6946..7329 +
1696949466.7084575-UTR-S-firma_F_contig1088:6945..73291696949466.7084575-UTR-S-firma_F_contig1088:6945..7329Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1088 6946..7329 +
1622815631.6280336-UTR-S-firma_F_contig1088:10382..117201622815631.6280336-UTR-S-firma_F_contig1088:10382..11720Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1088 10383..11720 +
1696949466.7804139-UTR-S-firma_F_contig1088:10382..117201696949466.7804139-UTR-S-firma_F_contig1088:10382..11720Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1088 10383..11720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.5770469-CDS-S-firma_F_contig1088:7329..74711622815631.5770469-CDS-S-firma_F_contig1088:7329..7471Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 7330..7471 +
1696949466.7201693-CDS-S-firma_F_contig1088:7329..74711696949466.7201693-CDS-S-firma_F_contig1088:7329..7471Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 7330..7471 +
1622815631.5862193-CDS-S-firma_F_contig1088:8172..84081622815631.5862193-CDS-S-firma_F_contig1088:8172..8408Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 8173..8408 +
1696949466.7390912-CDS-S-firma_F_contig1088:8172..84081696949466.7390912-CDS-S-firma_F_contig1088:8172..8408Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 8173..8408 +
1622815631.5975642-CDS-S-firma_F_contig1088:8784..89571622815631.5975642-CDS-S-firma_F_contig1088:8784..8957Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 8785..8957 +
1696949466.7513335-CDS-S-firma_F_contig1088:8784..89571696949466.7513335-CDS-S-firma_F_contig1088:8784..8957Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 8785..8957 +
1622815631.6076422-CDS-S-firma_F_contig1088:9325..99081622815631.6076422-CDS-S-firma_F_contig1088:9325..9908Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 9326..9908 +
1696949466.7596848-CDS-S-firma_F_contig1088:9325..99081696949466.7596848-CDS-S-firma_F_contig1088:9325..9908Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 9326..9908 +
1622815631.6173673-CDS-S-firma_F_contig1088:10253..103821622815631.6173673-CDS-S-firma_F_contig1088:10253..10382Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 10254..10382 +
1696949466.767897-CDS-S-firma_F_contig1088:10253..103821696949466.767897-CDS-S-firma_F_contig1088:10253..10382Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 10254..10382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1088.1166.1prot_S-firma_F_contig1088.1166.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1088 7330..10382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1088.1166.1

>prot_S-firma_F_contig1088.1166.1 ID=prot_S-firma_F_contig1088.1166.1|Name=mRNA_S-firma_F_contig1088.1166.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=421bp
MPRGGGFRGGGFGGRGGFRGPGFGVGRGFGWGPRFGPWFGPPRPGPLAFV
GAVATGAAIASVVGPPPRRRYPPPRAGYIYVVQQGQGAGAAAPRAVRAEE
ASFIIRRVTVASYRTDAGGAVLFEVQVTMNDGYKYGVLRRYSQFDQLRER
VAPIVRTVTPPFPPKNNIRSATVGLQPADLEERRSMLQGWLQSLCTAATT
NTVALRVPLYDFLETAAYYPPDEPFTTTTTTTTTTTQQHHSAGATGAAAT
ATATPASAIDGVPYATATPYAETLPTAAQGAGATAFTHPNLPPEVPRMAK
PDPAAASGGGNDGWAVPLESREASDLKLAMTGPDASGRLTGAQAAEALKT
GTGAGSEDLRAVWELSDIDRDGMLDRDEFAVAWYLAHQAAAGNKPPSSLP
ADVVPPSKRKGATRSSANPF*
back to top

mRNA from alignment at S-firma_F_contig1088:6946..11720+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1088.1166.1 ID=mRNA_S-firma_F_contig1088.1166.1|Name=mRNA_S-firma_F_contig1088.1166.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4775bp|location=Sequence derived from alignment at S-firma_F_contig1088:6946..11720+ (Sphaerotrichia firma ET2_F female)
CTGAGACTGGTTCTGGGAAACTTGCTTGAGAACTGAGAACTGAGAACTGA
GAACGCCTCGATACAATCCGCCGTCCCCGTCGTCCCGTCAGATTATCCGC
ACCCGCTGAAAAGTGAATTCTCGAAGACAGGTTATTGTACGACGCCCTTC
CGTGAATATCGCAGAGCCGTCGAGCGACTATTCTCCCCTTGTCTCGGGTC
GAGGCAATCGTGGTTCTACCTTCTTTGAGTAAATTTGTTAGCAAAAAAAG
CGTGCCCGCCTTCGAGAAGCCTCGAAAACTGCCTGCTGTGGTTCAACACC
CAAGCGAGCCTTCACTTGTGCCCTGAAGAGGGAGGCTCAAGGGAACAACC
GCACACGCGACAGGCGAATACCAAGAAGCGTAGCATGCCTCGAGGTGGAG
GCTTCCGGGGAGGAGGGTTCGGAGGGCGCGGCGGGTTTCGAGGGCCGGGC
TTCGGCGTCGGCAGAGGCTTCGGATGGGGCCCTCGGTTTGGCCCCTGGTT
CGGCCCGCCAAGGCCTGGACCCTTGGGTGAGAGATTAATTTGCTGATGCT
GACCAGATCCCGTCTGGGGGAGGTTGACGCGAGATAGAGGTGTGCGAGTG
AGAGGCGGGCGTCGTACTTTCCGTCCGTGTGATGAGCGTTCACATTCCAA
ACTGCTGTGGCATCACACTGGAGCAACGGCATGAATCCGGTGCGCGGTGT
CATGTGTCTGCCTGCGTGGTTACGGGCGTGTAGGCGGAGTTCGTTGCCTT
GCCGCTGCTGAATCCGTAGCCGTCGTTGGTGTTTCTTACGATGCGTGCGC
GTCGCTGCATCGGCCTTCTTTTCGGGTCGCGTTGTGTTGGCCATCTGCGT
CGCCAAATGAACGTTTGCCAGCCCAGACTTTTGTCACACCTCTGGCGGGG
CAACAGGTCATCTGTGTTGACCTTTGTGACCATCTTACACTGCTTGTAGC
AGTTCTCCCGCAGCCGTACAAAAGCCTTACTGAGACTGTCGCACCATCTC
TTGCAGCACAGCCGCGCACCTTCCAACAACTAAAGGCCTGGGTGTCAGAT
CAGTATCAAATATACCCGCTCGCTGCAAGGCTGCTCACAATCCGACAGCT
CGCTTGCGGTACAGTGTCTTGGGGAAAGCCCTGCCGTGTATCATGCGTAA
AGCTATCGCCGTTCGTCCCATGTGCCACGATAACAACGCCCTCGCTGTCA
TCTCCGCTTTCTTGCTTCGTGTGCCAGCCTTTGTCGGGGCCGTCGCAACC
GGGGCGGCGATCGCCTCGGTGGTGGGCCCGCCCCCCCGCCGCCGGTACCC
TCCCCCGCGCGCCGGCTACATCTACGTGGTGCAGCAAGGGCAAGGCGCAG
GCGCAGCAGCGCCCAGGGCCGTTCGCGCGGAAGAGGCCTCTTTCATCATT
AGGCGGGTCACGGTGGCGTCGTATCGGACGGATGCAGGGGGAGCGGTGCT
GTTTGAAGTGCAGGTACGCATGTAGGACGAAGTAGAAGTGGCGCACGGCG
TGCGGCAGGCAAGCAACAGGGGATGGGTGGTGGAAGGGTCAGGAGAGGGT
GTTTTTGCGGCGGGTGAACTCCGCCCTTCATACTCCCAAATACCGGCAAC
TGAGCAGCGATTCGCAACCTGGACAAGATATTGTTGCCCTACCGTGGCAA
GGGGCCCAGAATTAGGGGACGGCCGCTAGATGGTGTCGCTTTAGCCTTTC
TTCCGTGCCTGTCTTGCGAAGACTTGGTGAACGGCGTAGTGTTCTCCGTG
CTAAGATTGTATTTCCGATGGATGTCGTCCTAACTTTGCCTCTTTCGAAT
TTCCATCTCCGTTGTCCCATCGCGCACGTGTCCGTTTAGGTCACCATGAA
TGACGGCTACAAGTACGGCGTGCTGAGGCGCTACTCGCAGTTCGACCAGC
TCCGAGAGCGCGTCGCGCCGATTGTGCGCACGGTGACTCCGCCCTTCCCT
CCCAAGAACAACATCCGGAGCGCCACGGTCGGACTCCAACCGGCTGACTT
GGAAGAGCGTCGGTGAGTGAGTGTTTGTCTCTCCTGCGCACGCCGCGTGC
GTATGTGGCGCACCCGACTTGTTTTCCTCGGCACGCCGTTGACGACAGCA
AGAGTGCCGCCCGCTATCGCGTGTTTGGCCGCCGCCTTCGCCTCTGAGAC
AAGCAACATTATGCTAAAAAGCTTGCACCGACGGTGTAGCAACCTCTCGC
CGTGACCATGCCGCCATCACCACACCATGCACGCCTGTCCTCACGAGTTA
CCCCCCCCCCCGGTCTTTGCAAGCCTCTCGCCCCGAATCTACGCCTTCTC
TATGTACACTGGTGGCGAGCTTTCCTTCGGCTCAAGAATCAACAAGTCCC
CCCCCCCCCCCTGCTTCCCATCCGTACCAGGTCAATGCTGCAGGGATGGC
TCCAGTCCCTCTGCACGGCGGCCACCACCAACACCGTGGCCCTCCGCGTG
CCCCTGTACGACTTCCTGGAGACGGCCGCCTACTACCCCCCCGACGAGCC
CTTCACGACCACGACCACGACCACGACCACCACCACCCAGCAACACCACT
CCGCGGGTGCCACCGGGGCAGCGGCCACCGCCACGGCCACCCCTGCCTCT
GCGATTGACGGCGTCCCCTACGCCACGGCCACCCCGTACGCCGAAACCCT
GCCCACGGCGGCGCAAGGGGCCGGGGCCACGGCTTTCACCCACCCGAACC
TGCCACCAGAGGTGCCTAGGATGGCGAAACCGGACCCCGCTGCTGCGAGC
GGCGGCGGCAACGACGGCTGGGCGGTTCCGCTGGAGTCGCGAGAAGCGTC
GGACCTCAAGCTGGCGATGACGGGACCGGACGCGAGCGGGCGGCTGACGG
GGGCGCAGGCGGCGGAGGCGCTGAAGACGGGCACGGGGGCCGGGTCGGAA
GACCTGAGGGCCGTGTGGGAGCTTTCGGACATCGACCGGGATGGGATGCT
GGACCGCGACGAGGTGAGGACTGCTTTCGTCGCGTGCCGCGTGCAATTCA
CCGACATGTTTTTGGAAGGCTTCGGGGTGGTAGACTACAGTACGTTGCCA
TGAGTTTGGGGTGGGAGTAGTGTGGCGGCTTGTTCGTTTCCCGCTTTGTG
ATGCTGCAGCGTGAGACGTTTCCGTTCCTGAATGTTTAGCCTCCCCTGGT
GGGCCGTCTATGCGATGCTACCCCCCCCCCCCCCCCAATAAACATCTTTA
TCGTGGAAGTAGTCCGCAGACATTACGCTCTTTCCCCCCCCGCCGCTTCT
CACCCCGTGATTGATGTCTCCTCCCTTGTTGGCCGGCGATGATACCGTTT
TGTCCCAGTTTGCGGTGGCGTGGTACCTGGCGCACCAGGCGGCTGCTGGA
AACAAGCCCCCTTCTTCTCTGCCCGCCGACGTCGTGCCGCCTTCCAAGAG
AAAGGGCGCAACCCGCAGCTCGGCCAACCCCTTTTAGCTGTGTTTGCGGC
TCTGCTTGCGCACCCGGTGACGGGTAGAGGAAGTGCCGTAACCTACCAAC
GTTTCTCGTTGTTTCGGCCGCTGCGTTGTGTTCTATGTACAAATATGTGT
GTTCCATCACCTTCATCATGATCTAACAGAGAGTGAGTGTTACCCTTCTC
GGTGGTGAGGTTTGTTTGTCGTTCTCAAGCTCTTTCTTCGCGAGGGGCGG
GTAACAAGAGCTCGTTACCTTGTGAGTGTTGCGATGTTGTGTAGAAGAGG
TTGCGGGGGGGAAAGCCACGTGTCGAAATGCCTGTCTTCGAGGGTTGACC
GAAACGAGAGTCGGTTGTGTTCCAAAGGTGTGATTTCGATTGATGCTGCA
GTGGGAAATGGGAGCTGTCACTCGTGCGTTCGCGTGGAAGAGAGAGAGAG
CGAGGGAGGGAGAGAGAGAAAAGCGGAGGTATTGCTACGTACCGCAGGAG
AGAGACCATTTGTGACAGATGCGTGATCGGTAGAGAGACTGCCGTCGGCG
TTTTCCTCCCGAGATGTGTTGGAGCTGGGCCGCGTCAACGTGGTGTTGAG
CTCTTCCAAAAATTGTTCTGTTTTCGTGATGGGGCCTGCACGCCCGGTGT
TTCTCACTATACTAGCTGTGTTGATCGTATTTGCACGTGCAAGTGGAGCG
CGATGGCTGCTCTTTTTTTGGCGTTCTTCCCTCTTTCCCAGCGTTTCTGG
AGTTCGGGGTTGGAAGATGCCGAATACTCCCGGCCCAGACCCGTTATTTT
TCCCCGTCCAAGTCATGACGATCACCAGAAGAGAACGTATGTTGCATGTC
ATATCTCGCTCATGCATCGCAAGAAGATAACGCCGCTTCCTATAAACCCT
TAGCCATGGGTCTGGCCGTGGCTGGTAACCATTCATGTTTTTTGTGGGAG
CACACCTCCACCAGCCGTTTTCACCAAACAGCTACATAGGGACGGCGCTT
GCATACATACGGCACTGCTGTGTAGTACTGTGAGGTAACACCATGCCCAC
AAGCACGAGGTAAGCTAGCGGGTGTGACGCGAGAAGCGTGCAATGCGTTC
CCTCTCCTCTTCCGGCCAGGGACCTAAAAATCGATGATCGTGATTGGCTT
CGTGTCGTTCGTGGTGGAGGCAAGGCTTCACGGCCCAGCAGCAATGTGGA
GTGCGGGTGCTGCATGCAGTGCCTGCGTTACCCCAGAGAGGGCAAAGAAT
GTCCGCGTCACAGCACAGATCCACGGAAGGCAAGCCCGTCCGCGTACAGG
CAGGGCGCGCAACACGCAGGAGGACGCTTGGCTCACAAAACGCGTGCCGA
CAAAAAAAAAAACACACGCGTGCCC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1088:6946..11720+

>mRNA_S-firma_F_contig1088.1166.1 ID=mRNA_S-firma_F_contig1088.1166.1|Name=mRNA_S-firma_F_contig1088.1166.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2526bp|location=Sequence derived from alignment at S-firma_F_contig1088:6946..11720+ (Sphaerotrichia firma ET2_F female)
ATGCCTCGAGGTGGAGGCTTCCGGGGAGGAGGGTTCGGAGGGCGCGGCGG
GTTTCGAGGGCCGGGCTTCGGCGTCGGCAGAGGCTTCGGATGGGGCCCTC
GGTTTGGCCCCTGGTTCGGCCCGCCAAGGCCTGGACCCTTGGATGCCTCG
AGGTGGAGGCTTCCGGGGAGGAGGGTTCGGAGGGCGCGGCGGGTTTCGAG
GGCCGGGCTTCGGCGTCGGCAGAGGCTTCGGATGGGGCCCTCGGTTTGGC
CCCTGGTTCGGCCCGCCAAGGCCTGGACCCTTGGCCTTTGTCGGGGCCGT
CGCAACCGGGGCGGCGATCGCCTCGGTGGTGGGCCCGCCCCCCCGCCGCC
GGTACCCTCCCCCGCGCGCCGGCTACATCTACGTGGTGCAGCAAGGGCAA
GGCGCAGGCGCAGCAGCGCCCAGGGCCGTTCGCGCGGAAGAGGCCTCTTT
CATCATTAGGCGGGTCACGGTGGCGTCGTATCGGACGGATGCAGGGGGAG
CGGTGCTGTTTGAAGTGCAGCCTTTGTCGGGGCCGTCGCAACCGGGGCGG
CGATCGCCTCGGTGGTGGGCCCGCCCCCCCGCCGCCGGTACCCTCCCCCG
CGCGCCGGCTACATCTACGTGGTGCAGCAAGGGCAAGGCGCAGGCGCAGC
AGCGCCCAGGGCCGTTCGCGCGGAAGAGGCCTCTTTCATCATTAGGCGGG
TCACGGTGGCGTCGTATCGGACGGATGCAGGGGGAGCGGTGCTGTTTGAA
GTGCAGGTCACCATGAATGACGGCTACAAGTACGGCGTGCTGAGGCGCTA
CTCGCAGTTCGACCAGCTCCGAGAGCGCGTCGCGCCGATTGTGCGCACGG
TGACTCCGCCCTTCCCTCCCAAGAACAACATCCGGAGCGCCACGGTCGGA
CTCCAACCGGCTGACTTGGAAGAGCGTCGGTCACCATGAATGACGGCTAC
AAGTACGGCGTGCTGAGGCGCTACTCGCAGTTCGACCAGCTCCGAGAGCG
CGTCGCGCCGATTGTGCGCACGGTGACTCCGCCCTTCCCTCCCAAGAACA
ACATCCGGAGCGCCACGGTCGGACTCCAACCGGCTGACTTGGAAGAGCGT
CGGTCAATGCTGCAGGGATGGCTCCAGTCCCTCTGCACGGCGGCCACCAC
CAACACCGTGGCCCTCCGCGTGCCCCTGTACGACTTCCTGGAGACGGCCG
CCTACTACCCCCCCGACGAGCCCTTCACGACCACGACCACGACCACGACC
ACCACCACCCAGCAACACCACTCCGCGGGTGCCACCGGGGCAGCGGCCAC
CGCCACGGCCACCCCTGCCTCTGCGATTGACGGCGTCCCCTACGCCACGG
CCACCCCGTACGCCGAAACCCTGCCCACGGCGGCGCAAGGGGCCGGGGCC
ACGGCTTTCACCCACCCGAACCTGCCACCAGAGGTGCCTAGGATGGCGAA
ACCGGACCCCGCTGCTGCGAGCGGCGGCGGCAACGACGGCTGGGCGGTTC
CGCTGGAGTCGCGAGAAGCGTCGGACCTCAAGCTGGCGATGACGGGACCG
GACGCGAGCGGGCGGCTGACGGGGGCGCAGGCGGCGGAGGCGCTGAAGAC
GGGCACGGGGGCCGGGTCGGAAGACCTGAGGGCCGTGTGGGAGCTTTCGG
ACATCGACCGGGATGGGATGCTGGACCGCGACGAGGTCAATGCTGCAGGG
ATGGCTCCAGTCCCTCTGCACGGCGGCCACCACCAACACCGTGGCCCTCC
GCGTGCCCCTGTACGACTTCCTGGAGACGGCCGCCTACTACCCCCCCGAC
GAGCCCTTCACGACCACGACCACGACCACGACCACCACCACCCAGCAACA
CCACTCCGCGGGTGCCACCGGGGCAGCGGCCACCGCCACGGCCACCCCTG
CCTCTGCGATTGACGGCGTCCCCTACGCCACGGCCACCCCGTACGCCGAA
ACCCTGCCCACGGCGGCGCAAGGGGCCGGGGCCACGGCTTTCACCCACCC
GAACCTGCCACCAGAGGTGCCTAGGATGGCGAAACCGGACCCCGCTGCTG
CGAGCGGCGGCGGCAACGACGGCTGGGCGGTTCCGCTGGAGTCGCGAGAA
GCGTCGGACCTCAAGCTGGCGATGACGGGACCGGACGCGAGCGGGCGGCT
GACGGGGGCGCAGGCGGCGGAGGCGCTGAAGACGGGCACGGGGGCCGGGT
CGGAAGACCTGAGGGCCGTGTGGGAGCTTTCGGACATCGACCGGGATGGG
ATGCTGGACCGCGACGAGTTTGCGGTGGCGTGGTACCTGGCGCACCAGGC
GGCTGCTGGAAACAAGCCCCCTTCTTCTCTGCCCGCCGACGTCGTGCCGC
CTTCCAAGAGAAAGGGCGCAACCCGCAGCTCGGCCAACCCCTTTTAGTTT
GCGGTGGCGTGGTACCTGGCGCACCAGGCGGCTGCTGGAAACAAGCCCCC
TTCTTCTCTGCCCGCCGACGTCGTGCCGCCTTCCAAGAGAAAGGGCGCAA
CCCGCAGCTCGGCCAACCCCTTTTAG
back to top