mRNA_S-firma_F_contig10879.1164.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10879.1164.1
Unique NamemRNA_S-firma_F_contig10879.1164.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10879.1164.1 vs. uniprot
Match: D7FJQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ7_ECTSI)

HSP 1 Score: 535 bits (1378), Expect = 2.540e-184
Identity = 247/296 (83.45%), Postives = 271/296 (91.55%), Query Frame = 1
Query:    4 VHRLRKEQDLYESQYPERVQLLLNMGFEWDHTAVPDEWELIILGIEVFFRLNSHCRVPMRFTVPAEEPWPMEIWGHKLGTRIAQMRMTGRWLGQDEQTTEERRSRLEKFGFEWRLRVKDDEYDAEGNPEEFSILCEGLSVYRQLGGSVPNMPPTWVVPNADPWPIKTRGFPLGSQVRLIRSRQKYAKDSQEKADILLALDVPINPTITKEKISGRWGGPTETRFDKLCMALERFIALYGHSQVPNNFEVPRSEKWPEITWNVKLGRSLDNIVTKGTFIKEYPDRQARLEALGFDTD 891
            VHRLR EQ +Y++QYPERVQLL  MGFEW+HTAVPDEWELIILGI VFF ++ H RVPMRF VPAEEPWPMEIWGHKLG+RIAQMRMTGRWLGQDE+TTEERR+ LE++GFEWRLRVKDDEYDA+GNPEEFSILCEGL VYR+LGGSVPNMPPTWVVPNA+PWPI+TRGFPLG+QVR+IRSRQKYAKDSQEK DILLALDVPINP +T EK+ GRWGGPTETRF+KLC ALE F+ LYGH+QVPN FEVPR   WPE TW+VKLGRSL NIV+KGTFIK YPDRQARLEALGFDTD
Sbjct:  180 VHRLRNEQTVYDAQYPERVQLLRTMGFEWEHTAVPDEWELIILGIGVFFGIHGHSRVPMRFVVPAEEPWPMEIWGHKLGSRIAQMRMTGRWLGQDEKTTEERRTVLEQYGFEWRLRVKDDEYDADGNPEEFSILCEGLEVYRELGGSVPNMPPTWVVPNAEPWPIRTRGFPLGAQVRIIRSRQKYAKDSQEKTDILLALDVPINPNVTNEKLGGRWGGPTETRFNKLCKALETFVVLYGHAQVPNTFEVPRDPSWPEETWDVKLGRSLVNIVSKGTFIKGYPDRQARLEALGFDTD 475          
BLAST of mRNA_S-firma_F_contig10879.1164.1 vs. uniprot
Match: A0A6H5JXP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXP7_9PHAE)

HSP 1 Score: 534 bits (1375), Expect = 6.270e-180
Identity = 248/296 (83.78%), Postives = 269/296 (90.88%), Query Frame = 1
Query:    4 VHRLRKEQDLYESQYPERVQLLLNMGFEWDHTAVPDEWELIILGIEVFFRLNSHCRVPMRFTVPAEEPWPMEIWGHKLGTRIAQMRMTGRWLGQDEQTTEERRSRLEKFGFEWRLRVKDDEYDAEGNPEEFSILCEGLSVYRQLGGSVPNMPPTWVVPNADPWPIKTRGFPLGSQVRLIRSRQKYAKDSQEKADILLALDVPINPTITKEKISGRWGGPTETRFDKLCMALERFIALYGHSQVPNNFEVPRSEKWPEITWNVKLGRSLDNIVTKGTFIKEYPDRQARLEALGFDTD 891
            VHRLR EQ +YE+QYPERVQLL  MGFEW+HTAVPDEWELIILGI VFF ++ H RVPMRF VPAEEPWPMEIWGHKLG+RIAQMRMTGRWLGQDE+TTEERR+ LE++GFEWRLRVKDDEYDA+GNPEEFSILCE L VYR+LGGSVPNMPPTWVVPNADPWPI+TRGFPLG+QVR+IRSRQKYAKDSQEK D LLALDVPINP IT EK+ GRWGGPTETRF+KLC ALE F+ LYGH+QVPN FEVPR   WPE TW+VKLGRSL NIV+KGTFIK YPDRQARLEALGFDTD
Sbjct:  294 VHRLRNEQTIYEAQYPERVQLLRTMGFEWEHTAVPDEWELIILGIGVFFGIHGHSRVPMRFVVPAEEPWPMEIWGHKLGSRIAQMRMTGRWLGQDEKTTEERRTVLEQYGFEWRLRVKDDEYDADGNPEEFSILCEALKVYRELGGSVPNMPPTWVVPNADPWPIRTRGFPLGAQVRIIRSRQKYAKDSQEKTDTLLALDVPINPNITNEKLGGRWGGPTETRFNKLCKALETFVMLYGHAQVPNTFEVPRDPSWPEETWDVKLGRSLVNIVSKGTFIKGYPDRQARLEALGFDTD 589          
BLAST of mRNA_S-firma_F_contig10879.1164.1 vs. uniprot
Match: A0A835YSF3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSF3_9STRA)

HSP 1 Score: 157 bits (398), Expect = 7.650e-40
Identity = 118/373 (31.64%), Postives = 167/373 (44.77%), Query Frame = 1
Query:    4 VHRLRKEQDLYESQYPERVQLLLNMGFEWDH-------TAVP-----------------------------DEWELIILGIEVFFRLNSHCRVPMRFTVPAEEPWPMEIWGHKLGTRIAQMRMTGRWLGQD-------------EQTTEERRSRLEKFG------------FEWRLRVKDDEYDAEGNPEEFSILCEGLS----------------VYRQLGGSVPNMPPTWVVPNADPWPIKTRGFPLGSQVRLIRSRQK--YAKDSQEKADILLALDVPINPTITKEKISGRWGGPTETRFDKLCMALERFIALYGHSQVPNNFEVPRSEKWPEITWNVKLGRSLDNIVTKGTFIKEYPDRQARLEALGFD 885
            V +LR E+D Y + YPERVQ+L ++GFEW         TA                               D+WE ++ G+  +  L+   RVP RF VPAE PWP  + G KLG R+  +R TGR+L Q               +  EER + L+  G            FEW++R  DD  +A  +   F  + E L                 V++ L G    +P  +VVP+ + WP +  G  LG +   IR R +  Y     ++   L A+    +    K +        TET+F K+  AL  +  L G   VP +F VP    WPE  W +KLG+S+ +I + GTFIK +P R+A LEA GFD
Sbjct:   56 VAQLRNERDEYVAMYPERVQMLRSVGFEWGEGQQAPSVTAXXXXXXXXXXXXXXXXXXPAKVGRPARKPKVDDWEAVVTGLRTYAALHGDTRVPSRFAVPAEAPWPEALHGDKLGMRVNAIRSTGRYLQQFLAEGAKKASCGLLPERREERHTELDALGXXXXXXXXXXXXFEWKVRTSDDADEA--SAAGFEAVVEALQDLSILLMFXXXXXXXQVFKSLRGHT-LVPSDFVVPSTEEWPQRLWGLGLGQRCSGIRRRVRNMYVAGHPQRLQQLAAIGFDCD---NKNQA-------TETKFRKIFNALMMYRDLNGTLDVPQSFAVPGEAPWPEEWWGMKLGQSVASIRSTGTFIKAHPARRAMLEAEGFD 415          
BLAST of mRNA_S-firma_F_contig10879.1164.1 vs. uniprot
Match: A0A7S4MVR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MVR1_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.980e-35
Identity = 91/277 (32.85%), Postives = 139/277 (50.18%), Query Frame = 1
Query:   91 DHTAVPDEWELIILGIEVFFRLNSHCRVPMRFTVPAEEPWPMEIWGHKLGTRIAQMRMTGRWLGQDEQTTEERRSRLEKFGFEWRLRVKDDEYDAEGNPEEFSILCEGLSVYRQL-----GGSVPNMPPTWVVPNADPWPIKTRGFPLGSQVRLIRSRQKYAKDSQEKADILLALDVPINPTITKEKISGRWGGPTETRFDKLCMALERFIALYGHSQVPNNFEVPR-----SEKWPEITWNVKLGRSLDNIVTKGTFIKEYPDRQARLEALGFDTD 891
            D  A   EW  ++  + ++       +VP RF VP   PWP   WG KLG R++ +R TG++   + Q+ + RRS L+  GF WRLR    +   +G    F  +   L  Y+ +     GG + N+P  +VVPNADPWP+ TRG PLG ++  IRS+  Y K +   +D L  L    +  I             + R+ ++  AL R+  L G   VP  F +P      +E+W E    ++LG  ++ + ++GTF+K  P R+  L+ LGF  D
Sbjct:  125 DGGADAGEWTAVVESLRMYKAAYGDLKVPSRFVVPGMPPWPEAGWGLKLGQRVSAIRSTGKY---NVQSDDARRSALDDMGFLWRLRSPSGDKKMDGIT--FDQIYVALETYKSVIGSGKGGKI-NVPANFVVPNADPWPVSTRGLPLGKKIPAIRSKA-YLKSNPGASDKLNELGFEFDGKIAAN----------DQRYKRVYDALVRYKELNGDLLVPQPFVIPEDGQAGAEEWNEDARGLRLGARVNAVRSQGTFVKTNPGRRRELDELGFVWD 384          
BLAST of mRNA_S-firma_F_contig10879.1164.1 vs. uniprot
Match: B7FW16_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FW16_PHATC)

HSP 1 Score: 142 bits (359), Expect = 1.850e-34
Identity = 88/285 (30.88%), Postives = 139/285 (48.77%), Query Frame = 1
Query:   91 DHTAVPDEWELIILGIEVFFRLNSHCRVPMRFTVPAEEPWPMEIWGHKLGTRIAQMRMTGRWL-GQDEQTTEERRSRLEKFGFEWRLRVKDDEYDAEGNPEEFSILCE----GLSVYRQLGGSVPNMPPTWVVPNADPWPIKTRGFPLGSQVRLIRSRQKYAKDSQEKADILLALD-------------VPINPTITKEKISGRWGGP---TETRFDKLCMALERFIALYGHSQVPNNFEVPRSEKWPEITWNVKLGRSLDNIVTKGTFIKEYPDRQARLEALGF 882
            D TA   EW  ++  + ++       +VP +F VP   PWP   WG KLG  +A +R+TG+++ G+D+     R+  LEK GF W  R    +  AE   +  ++  E     L  YR+    +  +P  ++VP+A+PWP + RG PLGSQ+  +   Q   +  Q K   L  ++              P  P ++ E        P    + RF K+ +AL  +  +YG   VP  F VP    WP+ TW ++LG  ++ + ++GTF+   PDR+  L+ LGF
Sbjct:  149 DDTA---EWRAVLAALTLYQAAFGDVKVPQKFIVPTASPWPKPAWGLKLGKVVANIRLTGKYIHGRDK-----RKQALEKLGFLWAARSTP-QTRAEAEDDRSNVTVEQILAALVAYRENVAPLGPVPAKYIVPDAEPWPERVRGLPLGSQLARLPMDQ-LPETIQAKLQDLGVMERYMPLASSGSMGAPPTAPVVSGEAYQSASNVPPTANDIRFHKVYLALRTYKDVYGDLLVPQPFAVPSKAPWPQETWGLRLGARVNAVRSQGTFVNANPDRRQALDDLGF 423          
BLAST of mRNA_S-firma_F_contig10879.1164.1 vs. uniprot
Match: A0A7S2JR57_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JR57_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.320e-33
Identity = 84/258 (32.56%), Postives = 136/258 (52.71%), Query Frame = 1
Query:  112 EWELIILGIEVFFRLNSHCRVPMRFTVPAEEPWPMEIWGHKLGTRIAQMRMTGRWLGQDEQTTEERRSRLEKFGFEWRLRVKDDEYDAEGNPEEFSILCEGLSVYRQLGGSVPNMPPTWVVPNADPWPIKTRGFPLGSQVRLIRSRQKYAKDSQEKADILLALDVPINPTITKEKISGRWGGPTETRFDKLCMALERFIALYGHSQVPNNFEVPR-SEKWPEITWNVKLGRSLDNIVTKGTFIKEYPDRQARLEALGF 882
            EW  I+   +++       +VP RF VP+  PWP   WG KLGT++A +R TG+++  D+     RR  L+  GF WRLR    +   +G   +F  + + L  Y++  G++ ++P T+ VP+ + WP  +RG PLGS++  IRS+  Y K+  E+   L  L + ++  +               R+  +  AL R+  +YG   VP  F VP+ +E W E  W ++LG  ++ I ++GTF+   P R+  L  LGF
Sbjct:   98 EWRAILASFKMYKAAYGDLKVPSRFVVPSMPPWPESGWGLKLGTKVAAIRSTGKYVENDDG----RRQILDDIGFLWRLRSPSPDKKMDG--VKFEQIYDALVQYKKEFGNL-DVPITFSVPDIESWPQHSRGLPLGSKLATIRSKT-YLKNRPEQRKKLEELGLQLDGKVAANS----------ARYHLVYDALVRYKEIYGDLLVPQPFVVPKEAEDWNEPFWGLRLGARVNAIRSQGTFVNTDPSRREELSELGF 337          
BLAST of mRNA_S-firma_F_contig10879.1164.1 vs. uniprot
Match: A0A6A3ZZ92_9STRA (HA domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3ZZ92_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.990e-29
Identity = 88/276 (31.88%), Postives = 134/276 (48.55%), Query Frame = 1
Query:   67 LLNMGFEWDHTAVPDEW-ELIILGIEVFFRLNSHCRVPMRFTVPAEEPWPMEIWGHKLGTRIAQMRMTGRWLGQDEQTTEERRSRLEKFGFEWRLRVKDDEYDAEGNPEEFSILCEGLSVYRQLGGSVPNMPPTWVVPNADPWPIKTRGFPLGSQVRLIRSRQKYAKDSQEKADILLALDVPINPTITKEKISGRWGGPTETRFDKLCMALERFIALYGHSQVPNNFEVPRSEKWPEITWNVKLGRSLDNIVTKGTFIKEYPDRQARLEALGFDTD 891
            L  +GF WD      EW E I+  +E+F RL  HCRVP  F VP+++ W    W  KLG  I+ +R  G +  Q  +     ++RLE+ GF W      D Y+ E +      +   L  + +L G    +P ++VVP+ D W   +    LG+ VR IRS+  Y+         L  L          E++   W        +++  ALE F  L GH +VPN+F VP  + W +++W++KLG  +  I +KG++  +    + RLE LGF  D
Sbjct:  229 LEELGFVWDFYEF--EWSERIMPALEIFHRLEGHCRVPNSFVVPSDDNWLKVSWDLKLGNVISGIRSKGCYSTQISRD----KTRLEELGFVW------DFYEFEWSER----IMPALETFHRLEGHC-RVPNSFVVPSDDNWLKVSWDLKLGNVVRGIRSKGSYSTQISRDKTRLEEL----------EELGFVWDFYEFEWSERIMPALETFHRLEGHCRVPNSFVVPSDDNWLKVSWDLKLGNVVRGIRSKGSYSTQISRDKTRLEELGFVWD 477          
BLAST of mRNA_S-firma_F_contig10879.1164.1 vs. uniprot
Match: A0A6A3UP62_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3UP62_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.270e-27
Identity = 86/277 (31.05%), Postives = 133/277 (48.01%), Query Frame = 1
Query:   67 LLNMGFEWDHTAVPDEW-ELIILGIEVFFRLNSHCRVPMRFTVPAEEPWPMEIWGHKLGTRIAQMRMTGRWLGQDEQTTEERRSRLEKFGFEWRLRVKDDEYDAEGNPEEFSILCEGLSVYRQLGGSVPNMPPTWVVPNADPWPIKTRGFPLGSQVRLIRSRQKYAKD-SQEKADILLALDVPINPTITKEKISGRWGGPTETRFDKLCMALERFIALYGHSQVPNNFEVPRSEKWPEITWNVKLGRSLDNIVTKGTFIKEYPDRQARLEALGFDTD 891
            L  +GF WD      EW E I+  +E+F RL  HCRVP  F VP+++ W    W  KLG  I+ +R  G +  Q  +     ++RLE+ GF W      D Y+ E +      +   L  + +L G    +P ++VVP+ D W   +    LG+ VR IRS+  Y+   S++K  +              E++   W        +++  ALE F  L GH +VP +F VP  + WP   W +K+G  +  I +KG++  +    + RL+ LGF  D
Sbjct:  309 LEELGFVWDFYEF--EWSERIMPALEIFHRLEGHCRVPNSFVVPSDDNWLKVSWDLKLGNVISGIRSKGCYSTQISRD----KTRLEELGFVW------DFYEFEWSER----IMPALETFHRLEGHC-RVPNSFVVPSDDNWLKVSWDLKLGNVVRGIRSKGSYSTQISRDKTRL--------------EELGFVWDFNEYEWSERVMPALESFHRLEGHCRVPKSFVVPSDDNWPIALWGLKVGNVVRGIRSKGSYSTQISRDKTRLKELGFVWD 554          
BLAST of mRNA_S-firma_F_contig10879.1164.1 vs. uniprot
Match: A0A6A4E8C8_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4E8C8_9STRA)

HSP 1 Score: 106 bits (264), Expect = 6.240e-22
Identity = 86/317 (27.13%), Postives = 133/317 (41.96%), Query Frame = 1
Query:   67 LLNMGFEWDHTAVPDEW-ELIILGIEVFFRLNSHCRVPMRFTVPAEEPWPMEIWGHKLGTRIAQMRMTGRWLGQDEQTTEERRSRLEKFGFEWRLRVKDDEYDAEGNPEEFSILCEGLSVYRQLGGSV----------------------------------------PNMPPTWVVPNADPWPIKTRGFPLGSQVRLIRSRQKYAKD-SQEKADILLALDVPINPTITKEKISGRWGGPTETRFDKLCMALERFIALYGHSQVPNNFEVPRSEKWPEITWNVKLGRSLDNIVTKGTFIKEYPDRQARLEALGFDTD 891
            L  +GF WD      EW E I+  +E+F RL  HCRVP  F VP+++ W    W  KLG  I+ +R  G +  Q  +     ++RLE+ GF W      D Y+ E +      +   L  + +L G                                            +P ++VVP+ D W   +    LG+ VR IRS+  Y+   S++K  +              E++   W        +++  ALE F  L GH +VP +F VP  + WP   W +K+G  +  I +KG++  +    + RL+ LGF  D
Sbjct:  229 LEELGFVWDFYEF--EWSERIMPALEIFHRLEGHCRVPNSFVVPSDDNWLKVSWDLKLGNVISGIRSKGCYSTQISRD----KTRLEELGFVW------DFYEFEWSER----IMPALETFHRLEGHCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPNSFVVPSDDNWLKVSWDLKLGNVVRGIRSKGSYSTQISRDKTRL--------------EELGFVWDFNEYEWSERVMPALESFHRLEGHCRVPKSFVVPSDDNWPIALWGLKVGNVVSGIRSKGSYSTQISRDKTRLKELGFVWD 515          
BLAST of mRNA_S-firma_F_contig10879.1164.1 vs. uniprot
Match: W2PZ82_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2PZ82_PHYPN)

HSP 1 Score: 99.8 bits (247), Expect = 4.740e-20
Identity = 79/283 (27.92%), Postives = 131/283 (46.29%), Query Frame = 1
Query:   55 RVQLLLNMGFEWDHTAVPD-EWELIIL-GIEVFFRLNSHCRVPMRFTVPAE-EPWPMEIWGHKLGTRIAQMRMTGRWLGQDEQTTEERRSRLEKFGFEWRLRVKDDEYDAEGNPEEFSILCEGLSVYRQLGGSVPNMPPTWVVPNADPWPIKTRGFPLGSQVRLIRSRQKY----AKDSQEKADILLALDVPINPTITKEKISGRWGGPTETRFDKLCMALERFIALYGHSQVPNNFEVPRSEKWPEITWNVKLGRSLDNIVTKGTFIKEYPDRQARLEALGF 882
            +VQ L ++GF W    V D  W+++ +  +  + +L  HC VP  F    E + WP E+ G++LG  + ++R T        +  E  R  LEK GF          + +     + SIL     +Y ++ G+  N+   ++VP  +PWP    G  LG   R IR+R  +    A+D ++  +I    +V           + +W          +  AL+ ++ +YGH+ VP NF VP  + WPE +  +KLG    + + +  F       +A+LEALGF
Sbjct:  171 QVQDLDDIGFVW---VVADYNWDVLFMPALRRYRQLYGHCDVPQNFVAGEEKDEWPRELHGYRLGAMVNRVRATSY-----AEYVERDREELEKLGFY---------FHSHDQKWQESIL-PAFEMYHRIYGNC-NIQTHFIVPEEEPWPQSMWGMRLGFIARNIRNRGDFFLQVARDYEKLENIGFVWNV----------FAAKWQYA-------VLPALDIYVRVYGHANVPANFVVPSEDPWPEESHGLKLGELATSFLRRKIFADFIEIDRAQLEALGF 417          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10879.1164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJQ7_ECTSI2.540e-18483.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXP7_9PHAE6.270e-18083.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSF3_9STRA7.650e-4031.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4MVR1_9STRA2.980e-3532.85Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
B7FW16_PHATC1.850e-3430.88Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2JR57_9STRA2.320e-3332.56Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6A3ZZ92_9STRA2.990e-2931.88HA domain-containing protein n=2 Tax=Phytophthora ... [more]
A0A6A3UP62_9STRA3.270e-2731.05Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6A4E8C8_9STRA6.240e-2227.13Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]
W2PZ82_PHYPN4.740e-2027.92Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10879contigS-firma_F_contig10879:126..4581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FJQ7
PFAMsHA
Max annot lvl2759|Eukaryota
Evalue4.17e-185
EggNOG OGs2BAJG@1|root,2S0VX@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_010570.1
Hectar predicted targeting categoryother localisation
Exons7
Model size891
Cds size891
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.2730978-CDS-S-firma_F_contig10879:125..2581622815631.2730978-CDS-S-firma_F_contig10879:125..258Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10879 126..258 +
1696949466.4951649-CDS-S-firma_F_contig10879:125..2581696949466.4951649-CDS-S-firma_F_contig10879:125..258Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10879 126..258 +
1622815631.2880807-CDS-S-firma_F_contig10879:822..9571622815631.2880807-CDS-S-firma_F_contig10879:822..957Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10879 823..957 +
1696949466.5053642-CDS-S-firma_F_contig10879:822..9571696949466.5053642-CDS-S-firma_F_contig10879:822..957Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10879 823..957 +
1622815631.3046386-CDS-S-firma_F_contig10879:1659..18111622815631.3046386-CDS-S-firma_F_contig10879:1659..1811Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10879 1660..1811 +
1696949466.5142896-CDS-S-firma_F_contig10879:1659..18111696949466.5142896-CDS-S-firma_F_contig10879:1659..1811Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10879 1660..1811 +
1622815631.3204284-CDS-S-firma_F_contig10879:2215..23471622815631.3204284-CDS-S-firma_F_contig10879:2215..2347Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10879 2216..2347 +
1696949466.5237536-CDS-S-firma_F_contig10879:2215..23471696949466.5237536-CDS-S-firma_F_contig10879:2215..2347Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10879 2216..2347 +
1622815631.333523-CDS-S-firma_F_contig10879:3159..32881622815631.333523-CDS-S-firma_F_contig10879:3159..3288Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10879 3160..3288 +
1696949466.5340602-CDS-S-firma_F_contig10879:3159..32881696949466.5340602-CDS-S-firma_F_contig10879:3159..3288Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10879 3160..3288 +
1622815631.346896-CDS-S-firma_F_contig10879:3799..39431622815631.346896-CDS-S-firma_F_contig10879:3799..3943Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10879 3800..3943 +
1696949466.5451508-CDS-S-firma_F_contig10879:3799..39431696949466.5451508-CDS-S-firma_F_contig10879:3799..3943Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10879 3800..3943 +
1622815631.3587027-CDS-S-firma_F_contig10879:4515..45811622815631.3587027-CDS-S-firma_F_contig10879:4515..4581Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10879 4516..4581 +
1696949466.5636184-CDS-S-firma_F_contig10879:4515..45811696949466.5636184-CDS-S-firma_F_contig10879:4515..4581Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10879 4516..4581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10879.1164.1prot_S-firma_F_contig10879.1164.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10879 126..4581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10879.1164.1

>prot_S-firma_F_contig10879.1164.1 ID=prot_S-firma_F_contig10879.1164.1|Name=mRNA_S-firma_F_contig10879.1164.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=297bp
QVHRLRKEQDLYESQYPERVQLLLNMGFEWDHTAVPDEWELIILGIEVFF
RLNSHCRVPMRFTVPAEEPWPMEIWGHKLGTRIAQMRMTGRWLGQDEQTT
EERRSRLEKFGFEWRLRVKDDEYDAEGNPEEFSILCEGLSVYRQLGGSVP
NMPPTWVVPNADPWPIKTRGFPLGSQVRLIRSRQKYAKDSQEKADILLAL
DVPINPTITKEKISGRWGGPTETRFDKLCMALERFIALYGHSQVPNNFEV
PRSEKWPEITWNVKLGRSLDNIVTKGTFIKEYPDRQARLEALGFDTD
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mRNA from alignment at S-firma_F_contig10879:126..4581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10879.1164.1 ID=mRNA_S-firma_F_contig10879.1164.1|Name=mRNA_S-firma_F_contig10879.1164.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4456bp|location=Sequence derived from alignment at S-firma_F_contig10879:126..4581+ (Sphaerotrichia firma ET2_F female)
CAGGTCCACAGGCTTAGAAAGGAACAGGATTTATACGAGTCGCAGTACCC CGAGAGGGTTCAGCTCCTGCTCAACATGGGGTTCGAGTGGGATCACACGG CGGTGCCGGACGAGTGGGAACTCATCATCTTGGGTGAGAGATGAATGAGA CTACTGCCATCCTGCGGCGACCAGATCTTTTTGATTGGCGGCGGTCCTGC TGCCTGTGGGTGTGTAGAGCAAAATCACCGCATGTATCAGAGAAGTTCCC CGTTGTTGCTATGATGCTACTGCTGTTGTTGCTCTTGGGTAGTCTCGCTG TGTGGTTCTATTTGTTTATACTCGTGGGGGCTCCGTGGTGGCGAGTGTGC CCTCTTCGGGCCCATGTGGGTGAATGTGATGGTGATCCAGCCCGTTCGCC TCGTGGGCTCAGCCTAGACGATCAAGACTATTGTATCGTGTCGGTTGCGG CCCTCGCAGGCTATAGGTTAGCTACATGTATGGTACGTATTTGTGTGTCC CGCTGATGGCCGCAATCCAGTTTTTCTCCGGCCTTTCAACCGAGGGGGAG AACACGCACACGACAACAACAAAAAGGCACACGTCATACATGTCACCGCC GTCCTCTTTTTTTCATTTCTTTTTGCATTTTCGCGGAACCCCGACCCGAG CTGACGTGCCCGAATCTTTTTTTTTGCCCCGATGATTGTTTGTTCAGGGA TCGAGGTGTTTTTCCGGCTGAACTCGCACTGTCGAGTGCCGATGAGGTTC ACCGTGCCGGCGGAGGAGCCGTGGCCGATGGAGATCTGGGGCCACAAGCT CGGCACGCGCATCGCGCAGATGAGGATGACAGGTGGGTTTTGTTTCCGCA GCACGCTGTGCTCGAGTGACAAAGGGGTTGCAGGACAGGGGGGGGGGGGG GGGCAATGGAAGACTATGTAAATGGCCCCAGTGAAGGGCTCCTACTACCG TATGTGGTCTCTTGGCCGTTTGGCCTGCAGCTGTGCTCGAGAAGTGTTAT CTACGTGAGGTGTTCCGCGGCTGGTCCGTTGTAGGCAAATTCGCGAGGAA TTATTTGAAGCACTTGCGTCGGACCCATAGCAACAAAGTCTTCGAACCGT GTGAGTGTATATACTTAAGCGCTGATTTTGTCTGATTCTGGCTGTTCTTC GCAAAAGCCTGGAGGTGAAACAAGAAACTTTTGTGTAGAGCGGGTACATA AAATGATACATGGAAAGGGCGCTGGCTGAATGTTGAGCTCTGTGCGTGTG ATCTCCGTTCGTTTTCCACTCGTGTCGTTATGCTCACCGCAGGAGGGGGT CCACCCCCCCCTCCTGTGTGACCCCGGTTGGGTCGTCTAGCTAGTCGTAG TGGAGGATAGGAGCCAGTGGGGCAGACGGCAGAATCCAATAATGGGAGAA AAAAGGGGGGGTTAGTGTGTCTACAACAGTCCCCCTGGAACGACTTATTA TTCACAGGCTGGGCGTAGACGGCTGACGTTTGTAGAACATTTAAAACAAA AAAAACACGTGTACGTGTATGCATCCTATCCCAGGGCGGTGGTTGGGCCA GGACGAGCAAACGACGGAGGAGAGGAGAAGCAGGCTCGAGAAGTTCGGGT TCGAGTGGCGCCTGAGGGTCAAGGACGACGAGTACGACGCGGAAGGCAAC CCGGAGGAGTTTTCCATCCTCTGCGAGGGATTGTCGGTGAGAGGAGACGA GAAAGGAGAGGGGGGGAGAAGAGAGCTAGAGAGAGAGGGAGAGAGAGAGA GATAGAGATACAGAGATAGATACAGAGATAGAGATAGATATGTAGAAAGA AAGAGAGCGAGACACAGAGAACGAGAGAGACAGAGAGAGAGGGAGAGAGA GTTTGCCGTCGTGATTAAAAGGAGCTAAACAGAGCTCTTGGCCGATCGAT TGCATGGCCGCTTCTGCGACTTCCCCTGCTCTCCCGTCGTGGGTGGAAAG TCTGTCGGGGGGGAGGTATGTAGTCTACCCTCGAAGGGACGTGGGGACTT AAGAGCTCAACATGCGCCCCTTCACGTACTGTATGCTCTGTCCGCACTAT GTTGCTGGGGTGGATATCCTTGTTTCCATGGCATGACCAGGTGTACCGGC AGCTGGGGGGCTCCGTCCCGAACATGCCTCCCACGTGGGTCGTTCCGAAC GCGGACCCTTGGCCAATCAAAACGAGGGGATTTCCGCTGGGGTCACAAGT GCGGCTTATCCGGTCTCGACAGGTGTGTGTGGGTGTGGGGGGTGATGTCA TGACGATGCGGTTTTCGTGAAGTGCAAAGGTTTATACGGAGTATATCACT TGCTGTGTGTGCATGCGTACATGGCGGCTGATTTCCGTTGCTGCTCGAAA TCGCACGACGAACAAGGCACCCGAATACTAACACCGAACCCTAACACCGA ACCCAAACACCGAACCCTGACACCTAACCCTGACACCTAACCCTAACATC GAACCCTAACACCTAACCCTAACACCGAACCCTGACACCTAACCCTGACA TCGAACCCAAACACCGAACCCTAGCACCCAACCCTGCGGTCCGAGTAGAT GCCGACTGCCAACTTAAAAAGATTTTACAGGGAAGAAATGGGGCATTCGT ATCACATGTACGTAGCAATCTGGGCTTCTTTAGAGCGGAACAACAGGTAT ACTACCCCGCTGGCCGATCTGGAGAGGGAACGTTTGGGGTGGAGAAGCAG CCCGGCAGTCACAGTCACTCGATGAACGGTGCCATATACAAGAAGTTTGC ATCGAAGCAGGAGCGAGTGAGCGTGATGCAGGGCAATCGTTACCCGGTGG GACCTATAAGTATATCTCTGGGGTGGGGACCCCGTGGATGTCGCGGCTAC AGCGGCATGTCGACTCCTTGCGAGAGAAGGTTTTAAGGCTCGAACACACC GGTTCGGCCTTTTGCTCGCGAACCCTCTCCCCCCCAACAAAGAAGAAGAA ACACCCGCACACAATCACCGATCTATCAATCAATCAATCAATCGATCGAT CTCTTCCTCCCATCTCCATCTCTGCCTCTCCCAGAAATACGCCAAGGATA GCCAGGAAAAGGCGGACATCTTGCTGGCGCTTGATGTGCCAATCAACCCG ACCATCACCAAGGAGAAGATTAGCGGCCGCTGGGGCGGTCCTACCGAGAC TCGTTTCGATAAGGTGGGTATTGTCTTCCCCCCCCCCCCTCTCCCCCGGT GTCTTGTTTAGGCCGGGCGGGTGCTGCCGTGAGCCGTCTGCTGTGATAAC TTTTATTACCCTTTCGTAATTTCGAGTATCATTGCTGTGTGTCCGATGTA CAGGCGCTCGTTTAGGCCAAGCGGGTGTTGCCGTGAGCCGTCTGCTGTGA TAAACTTTAATCTCCCTTTTGTAATTTCGACGTATCCATGCCTTTGTACA CCTCTCTTTCATCCATGCTCGTAACGGTTAGGTTTGAGGCCGGTTATCTA CGTCGAGTTCCATGTGATTTTGTCCCAAGGCACCCCCCCCCTTCCCTTGG CGCGTCTTATAGGGGTTCCGTGCATGAATAGAAACGCGTTCCAGTTTGGT GTTACCCTGTCACTGTCCCCTTCCCTCCCGCGCCCCCCTGGCCACAACGG AATAGTGAAATGACGAAAGGGAGCAACATTTGAGTTTGTCCCCCCCCCCT CCCCCTCTTGGTGCCCCCCCACAGCTGTGCATGGCGCTGGAGAGGTTTAT CGCCCTGTACGGACACTCGCAGGTGCCCAACAACTTTGAGGTCCCGAGGT CGGAGAAATGGCCCGAGATTACCTGGAACGTGAAGCTAGGCAGAAGCCTT GACAACATCGTGACCAAGGTATCAAGTGTTCGGATGTATCTTGAGTCAGT CGTATCAAAGCGCTCCTTCGTTCGTTTGTCACTGGTACTGCTGTCGCCGA GCATCTCGCTGATTCTGGGGTTGAGAGGGAAGTGCGGAAGGAAGGTCTGT GTGGGGGGTCGGGAAATGATGTTTGAGGCTGGATGGGCGGGGGGCCGGCT ACCCGTTGGCATTTTTTTTTTGCGAGAACGCTAGCGTGAAGCGTTTCCTT GGAACAGGTTCGCTGTTTTCTCCGATCTTTTCCTCCTTTTCTTCCTGCCC TCGTGCCACCGGTTACCTGACTTGACCCGACCTGGCCTGCCCTTGTGCGG CTTGCCTGACTGCTGCTGTATCTTGCGTTTATCTTGTCTACTTCTGCTAC CGATTTCCTGGCTTGACCTGGCTTGACCCTTGTGCGGTCTTCCTGACTGC TGTCTTGGGTCTGTCTTACCTACTTCTGCTACCGATTGCCTGACTTGACC TGACTTGACTTGACTTGACCTTGTGCGGCTTGCTGACTGCCGTGTCTTGT TGCGTCTGCCTTGGCTACTGGCCCTGCGTCCGACGAGCAGGGAACGTTCA TCAAGGAATACCCGGACCGCCAGGCCAGGCTGGAGGCGCTGGGCTTTGAC ACAGAT
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Coding sequence (CDS) from alignment at S-firma_F_contig10879:126..4581+

>mRNA_S-firma_F_contig10879.1164.1 ID=mRNA_S-firma_F_contig10879.1164.1|Name=mRNA_S-firma_F_contig10879.1164.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1782bp|location=Sequence derived from alignment at S-firma_F_contig10879:126..4581+ (Sphaerotrichia firma ET2_F female)
CAGGTCCACAGGCTTAGAAAGGAACAGGATTTATACGAGTCGCAGTACCC
CGAGAGGGTTCAGCTCCTGCTCAACATGGGGTTCGAGTGGGATCACACGG
CGGTGCCGGACGAGTGGGAACTCATCATCTTGGCAGGTCCACAGGCTTAG
AAAGGAACAGGATTTATACGAGTCGCAGTACCCCGAGAGGGTTCAGCTCC
TGCTCAACATGGGGTTCGAGTGGGATCACACGGCGGTGCCGGACGAGTGG
GAACTCATCATCTTGGGGATCGAGGTGTTTTTCCGGCTGAACTCGCACTG
TCGAGTGCCGATGAGGTTCACCGTGCCGGCGGAGGAGCCGTGGCCGATGG
AGATCTGGGGCCACAAGCTCGGCACGCGCATCGCGCAGATGAGGATGACA
GGGATCGAGGTGTTTTTCCGGCTGAACTCGCACTGTCGAGTGCCGATGAG
GTTCACCGTGCCGGCGGAGGAGCCGTGGCCGATGGAGATCTGGGGCCACA
AGCTCGGCACGCGCATCGCGCAGATGAGGATGACAGGGCGGTGGTTGGGC
CAGGACGAGCAAACGACGGAGGAGAGGAGAAGCAGGCTCGAGAAGTTCGG
GTTCGAGTGGCGCCTGAGGGTCAAGGACGACGAGTACGACGCGGAAGGCA
ACCCGGAGGAGTTTTCCATCCTCTGCGAGGGATTGTCGGGCGGTGGTTGG
GCCAGGACGAGCAAACGACGGAGGAGAGGAGAAGCAGGCTCGAGAAGTTC
GGGTTCGAGTGGCGCCTGAGGGTCAAGGACGACGAGTACGACGCGGAAGG
CAACCCGGAGGAGTTTTCCATCCTCTGCGAGGGATTGTCGGTGTACCGGC
AGCTGGGGGGCTCCGTCCCGAACATGCCTCCCACGTGGGTCGTTCCGAAC
GCGGACCCTTGGCCAATCAAAACGAGGGGATTTCCGCTGGGGTCACAAGT
GCGGCTTATCCGGTCTCGACAGGTGTACCGGCAGCTGGGGGGCTCCGTCC
CGAACATGCCTCCCACGTGGGTCGTTCCGAACGCGGACCCTTGGCCAATC
AAAACGAGGGGATTTCCGCTGGGGTCACAAGTGCGGCTTATCCGGTCTCG
ACAGAAATACGCCAAGGATAGCCAGGAAAAGGCGGACATCTTGCTGGCGC
TTGATGTGCCAATCAACCCGACCATCACCAAGGAGAAGATTAGCGGCCGC
TGGGGCGGTCCTACCGAGACTCGTTTCGATAAGAAATACGCCAAGGATAG
CCAGGAAAAGGCGGACATCTTGCTGGCGCTTGATGTGCCAATCAACCCGA
CCATCACCAAGGAGAAGATTAGCGGCCGCTGGGGCGGTCCTACCGAGACT
CGTTTCGATAAGCTGTGCATGGCGCTGGAGAGGTTTATCGCCCTGTACGG
ACACTCGCAGGTGCCCAACAACTTTGAGGTCCCGAGGTCGGAGAAATGGC
CCGAGATTACCTGGAACGTGAAGCTAGGCAGAAGCCTTGACAACATCGTG
ACCAAGCTGTGCATGGCGCTGGAGAGGTTTATCGCCCTGTACGGACACTC
GCAGGTGCCCAACAACTTTGAGGTCCCGAGGTCGGAGAAATGGCCCGAGA
TTACCTGGAACGTGAAGCTAGGCAGAAGCCTTGACAACATCGTGACCAAG
GGAACGTTCATCAAGGAATACCCGGACCGCCAGGCCAGGCTGGAGGCGCT
GGGCTTTGACACAGATGGAACGTTCATCAAGGAATACCCGGACCGCCAGG
CCAGGCTGGAGGCGCTGGGCTTTGACACAGAT
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