mRNA_S-firma_F_contig10877.1163.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10877.1163.1 vs. uniprot
Match: A0A7S1CMR6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMR6_9STRA) HSP 1 Score: 175 bits (443), Expect = 2.880e-53 Identity = 82/137 (59.85%), Postives = 110/137 (80.29%), Query Frame = 1
Query: 55 LFTDIFSVVRLNPEGRKFDRVSRLVCKGETYDTDLSVDIATQAFPCAAGDKITVSLASTLRLDGKPDEGTYDPS-GEPSLLDSYEYGMAGKVFQVDHKSDRRVNIFMSFGGLLLLLQGDYMNLSTMETDQRVYCLIR 462
LF DIF+V +NP+G+KFDRVSRLVCKGET+D L +D+A++ FP AG+K+ V++ STLRLDG+PD+GTY + GE SLLD Y+YGM G+VF+ D++ D RV+++ SFGGLL+LL G +LS++ DQRVYCLIR
Sbjct: 8 LFHDIFTVDDVNPDGKKFDRVSRLVCKGETWDVLLKIDVASEVFPVKAGEKLAVAVVSTLRLDGEPDDGTYQHNEGEESLLDQYDYGMHGRVFKYDYEEDDRVSVYASFGGLLMLLHGQQDSLSSLSLDQRVYCLIR 144
BLAST of mRNA_S-firma_F_contig10877.1163.1 vs. uniprot
Match: A0A813B0I3_9DINO (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B0I3_9DINO) HSP 1 Score: 170 bits (431), Expect = 1.440e-51 Identity = 75/139 (53.96%), Postives = 105/139 (75.54%), Query Frame = 1
Query: 55 LFTDIFSVVRLNPEGRKFDRVSRLVCKGETYDTDLSVDIATQAFPCAAGDKITVSLASTLRLDGKPDEGTYDPSGEPSLLDSYEYGMAGKVFQVDHKSDRRVNIFMSFGGLLLLLQGDYMNLSTMETDQRVYCLIRHAG 471
L DIF+V +NP+G+KFD+V+RL+CK ETY D+S+DIA++ +P +K + L STLRLDGKPD+GTYD S + S LD++EYGM+GK+F+ DH D RV+I+ S+GGLL+L+QG +L ++ D RVYCL+R A
Sbjct: 11 LLNDIFTVTAVNPDGKKFDKVNRLICKSETYGIDMSIDIASEVYPLKKDEKFAMVLRSTLRLDGKPDDGTYDQSTKESALDAFEYGMSGKIFKYDHAEDARVSIYASYGGLLMLVQGKAEHLKALKLDSRVYCLMRRAA 149
BLAST of mRNA_S-firma_F_contig10877.1163.1 vs. uniprot
Match: A0A024TMY4_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=9 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TMY4_9STRA) HSP 1 Score: 157 bits (397), Expect = 1.540e-46 Identity = 70/136 (51.47%), Postives = 100/136 (73.53%), Query Frame = 1
Query: 55 LFTDIFSVVRLNPEGRKFDRVSRLVCKGETYDTDLSVDIATQAFPCAAGDKITVSLASTLRLDGKPDEGTYDPSGEPSLLDSYEYGMAGKVFQVDHKSDRRVNIFMSFGGLLLLLQGDYMNLSTMETDQRVYCLIR 462
+F DIF + +LNPEG+KF+RV+RL+CKG +Y+ +L +DI ++ FP ++ T +L STL L+GKPD+G +D +G+P+LLD Y+YGM GKVFQ DH+ V I+ SFGGLL+ L+GD +L + RVYCL+R
Sbjct: 6 MFEDIFEIKQLNPEGKKFERVTRLMCKGVSYELELMLDINSEVFPMKVHEQFTFALVSTLDLEGKPDDGIFDQTGKPTLLDRYDYGMYGKVFQYDHEGGNMVAIYASFGGLLMCLRGDQAHLRNIHNGSRVYCLMR 141
BLAST of mRNA_S-firma_F_contig10877.1163.1 vs. uniprot
Match: K3X3H5_GLOUD (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=29 Tax=Oomycota TaxID=4762 RepID=K3X3H5_GLOUD) HSP 1 Score: 157 bits (396), Expect = 2.120e-46 Identity = 70/136 (51.47%), Postives = 102/136 (75.00%), Query Frame = 1
Query: 55 LFTDIFSVVRLNPEGRKFDRVSRLVCKGETYDTDLSVDIATQAFPCAAGDKITVSLASTLRLDGKPDEGTYDPSGEPSLLDSYEYGMAGKVFQVDHKSDRRVNIFMSFGGLLLLLQGDYMNLSTMETDQRVYCLIR 462
LF DIF V ++NP+G+KFD+V+R+VCKG +Y+ +L++DI ++ + +K T +L STL L+GKPD+GTY+ SG+P+LLD Y+YGM GKVFQ DH+ V I+ SFGGLL+ L+G+ +L + D R+YCL+R
Sbjct: 5 LFEDIFEVRQVNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTFALVSTLDLEGKPDDGTYNQSGKPTLLDRYDYGMYGKVFQYDHEGGNVVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLR 140
BLAST of mRNA_S-firma_F_contig10877.1163.1 vs. uniprot
Match: D8LM46_ECTSI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM46_ECTSI) HSP 1 Score: 154 bits (388), Expect = 3.700e-45 Identity = 73/138 (52.90%), Postives = 98/138 (71.01%), Query Frame = 1
Query: 52 LLFTDIFSVVRLNPEGRKFDRVSRLVCKGETYDTDLSVDIATQAFPCAAGDKITVSLASTLRLDGKPDEGTYDPSG-EPSLLDSYEYGMAGKVFQVDHKSDRRVNIFMSFGGLLLLLQGDYMNLSTMETDQRVYCLIR 462
+LF DIF V +LNP+G+KFDRV+RL CKG TYD DL +D +P G+++T +ASTL L GKPD+GTY P G E SL D YEY M G+V++ D + D +V +F SFGGLL+ L GD +++ +E D RV+CL+R
Sbjct: 4 VLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVIASTLDLSGKPDDGTYKPLGDEVSLADKYEYVMHGRVYRFDQQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLR 141
BLAST of mRNA_S-firma_F_contig10877.1163.1 vs. uniprot
Match: A0A024G723_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G723_9STRA) HSP 1 Score: 149 bits (376), Expect = 6.890e-43 Identity = 68/136 (50.00%), Postives = 99/136 (72.79%), Query Frame = 1
Query: 55 LFTDIFSVVRLNPEGRKFDRVSRLVCKGETYDTDLSVDIATQAFPCAAGDKITVSLASTLRLDGKPDEGTYDPSGEPSLLDSYEYGMAGKVFQVDHKSDRRVNIFMSFGGLLLLLQGDYMNLSTMETDQRVYCLIR 462
LF DIF V +LNPEG+KFD+V+R+V KG +Y+ +L++DI ++ + DK T +L STL L+GKPD+G Y+ SG+ +LLD Y+YGM GK+FQ +H+ V I+ SFGGLL+ L+G+ +L + D R+YCL+R
Sbjct: 41 LFEDIFEVRQLNPEGKKFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVSTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFQYEHEGGNNVAIYASFGGLLMRLRGEQRHLHLVHNDSRIYCLLR 176
BLAST of mRNA_S-firma_F_contig10877.1163.1 vs. uniprot
Match: A0A5A8C6V6_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C6V6_CAFRO) HSP 1 Score: 148 bits (373), Expect = 1.290e-42 Identity = 69/138 (50.00%), Postives = 100/138 (72.46%), Query Frame = 1
Query: 55 LFTDIFSVVRLNPEGRKFDRVSRLVCKGETYDTDLSVDIATQAFPCAAGDKITVSLASTLRLDGKPDEGTYDPSGEPSLLDSYEYGMAGKVFQVDHKSDRRVNIFMSFGGLLLLLQGDYMNLSTMETDQRVYCLIRHA 468
LF D+F V+R+NPEG+KF++V+RLVCKG T D D+ VDIA++ + ++ ++ +ASTLRLDG+ D+ +D SG +LLD Y+YGM G+VFQ D K + V + +SFGGLL+ L+G+ +L+ +E D RVY L R A
Sbjct: 24 LFDDMFDVLRVNPEGKKFEKVNRLVCKGTTLDVDMIVDIASEVYNLGKDERFSLRIASTLRLDGRKDDDAFDQSGRETLLDQYDYGMCGRVFQYDIKGSK-VALMVSFGGLLMKLEGERQHLAAIELDARVYALFRKA 160
BLAST of mRNA_S-firma_F_contig10877.1163.1 vs. uniprot
Match: A0A7S1BC37_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BC37_9STRA) HSP 1 Score: 144 bits (364), Expect = 1.620e-41 Identity = 67/142 (47.18%), Postives = 98/142 (69.01%), Query Frame = 1
Query: 37 MADGKLLFTDIFSVVRLNPEGRKFDRVSRLVCKGETYDTDLSVDIATQAFPCAAGDKITVSLASTLRLDGKPDEGTYDPSGEPSLLDSYEYGMAGKVFQVDHKSDRRVNIFMSFGGLLLLLQGDYMNLSTMETDQRVYCLIR 462
MA LF DIF V +LNP+G+KF R++R+ G T+ DL +D ++ +P A +KIT+ L+STL LDG+PD+G YD SGEP++ D+YEY M G+VF + +K D + + +SFGGLL+ L GD +L + D+R+Y LI+
Sbjct: 1 MATRVTLFEDIFVVKQLNPDGKKFSRINRIQATGTTFQCDLLLDTNSEIYPIAEEEKITIVLSSTLSLDGRPDDGEYDQSGEPTMADNYEYVMHGRVFDIKYKGDGVIAVHVSFGGLLMRLTGDQRHLENVRADERLYILIK 142
BLAST of mRNA_S-firma_F_contig10877.1163.1 vs. uniprot
Match: A0A7S2NQE3_9EUKA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2NQE3_9EUKA) HSP 1 Score: 144 bits (363), Expect = 3.210e-41 Identity = 69/147 (46.94%), Postives = 102/147 (69.39%), Query Frame = 1
Query: 52 LLFTDIFSVVRLNPEGRKFDRVSRLVCKGETYDTDLSVDIATQAFPCAAGDKITVSLASTLRLDGKPDEGTYDPSGEPSLLDSYEYGMAGKVFQVDHKSDRR----------VNIFMSFGGLLLLLQGDYMNLSTMETDQRVYCLIR 462
+LF D+F + ++ EG+KFD+VSR+ GETY+ DL +D+ T +P A G+K+T++LASTL L GKP+ +Y+PS EPSL D YEY M GKV++ D D++ V+++MS+GGLL++L+GD NL +E D R+Y L+R
Sbjct: 7 ILFEDMFEIKAVDREGKKFDKVSRIEGVGETYEMDLILDVNTDIYPLAEGNKVTLALASTLNLQGKPEGDSYEPSDEPSLADRYEYVMFGKVYKFDRDGDKKDAPKKNPNAKVSVYMSYGGLLMMLRGDPKNLLRIELDSRLYLLLR 153
BLAST of mRNA_S-firma_F_contig10877.1163.1 vs. uniprot
Match: A0A2R5G8T6_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8T6_9STRA) HSP 1 Score: 144 bits (362), Expect = 4.840e-41 Identity = 67/145 (46.21%), Postives = 103/145 (71.03%), Query Frame = 1
Query: 52 LLFTDIFSVVRLNPEGR---KFDRVSRLVCKGETYDTDLSVDIATQAFPCAAGDKITVSLASTLRLDGKPDEGTYDPSGEPSLLDSYEYGMAGKVFQVDH--KSDRRVNIFMSFGGLLLLLQGDYMNLSTMETDQRVYCLIRHAG 471
+LF D F V +NP+G+ +F VSR+V +G T++ DL VDI ++ FP A ++ T++LASTL +DGKPD+GTY+ SG P+LLD ++YGM G+VF ++ + + RV I+ S+GGLL+ L GD L+T++ D R+YCL++ +
Sbjct: 10 ILFEDTFEVKDVNPKGKSSTQFKNVSRIVARGATFEMDLVVDIQSELFPMAMNERFTLALASTLDMDGKPDDGTYNQSGAPTLLDKFDYGMHGRVFSYEYVGEGEHRVAIYASYGGLLMKLVGDQRKLNTIDLDTRIYCLLKRSS 154 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10877.1163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10877.1163.1 >prot_S-firma_F_contig10877.1163.1 ID=prot_S-firma_F_contig10877.1163.1|Name=mRNA_S-firma_F_contig10877.1163.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=159bp LSQLQPRTHKRFMADGKLLFTDIFSVVRLNPEGRKFDRVSRLVCKGETYDback to top mRNA from alignment at S-firma_F_contig10877:736..1577+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10877.1163.1 ID=mRNA_S-firma_F_contig10877.1163.1|Name=mRNA_S-firma_F_contig10877.1163.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=842bp|location=Sequence derived from alignment at S-firma_F_contig10877:736..1577+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10877:736..1577+ >mRNA_S-firma_F_contig10877.1163.1 ID=mRNA_S-firma_F_contig10877.1163.1|Name=mRNA_S-firma_F_contig10877.1163.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=954bp|location=Sequence derived from alignment at S-firma_F_contig10877:736..1577+ (Sphaerotrichia firma ET2_F female)back to top |