mRNA_S-firma_F_contig10876.1162.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10876.1162.1
Unique NamemRNA_S-firma_F_contig10876.1162.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10876.1162.1 vs. uniprot
Match: UPI000C774F78 (zinc finger MYND domain-containing protein 10-like isoform X1 n=3 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C774F78)

HSP 1 Score: 63.5 bits (153), Expect = 2.300e-10
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:   22 SPHCVVCGRPAANKCSRCKSVAYCSRACQKRHWRVHKQTCNPL 150
            SP C++CG+   N+CSRCK   YCSR CQK HW+ H++ C  +
Sbjct:  411 SPTCIICGKQGNNRCSRCKKQNYCSRECQKEHWKTHRKICKEI 453
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BLAST of mRNA_S-firma_F_contig10876.1162.1 vs. uniprot
Match: A0A0D7BSV8_9AGAR (MYND-type domain-containing protein n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7BSV8_9AGAR)

HSP 1 Score: 62.8 bits (151), Expect = 4.330e-10
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:   13 VTHSPHCVVCGRPAANKCSRCKSVAYCSRACQKRHWRVHKQTCNPL 150
            + H+  CV+CG   AN+C++C S +YCSR CQK HW+ HK  C  L
Sbjct:  378 IMHNTGCVLCGEKGANRCAQCHSTSYCSRECQKAHWKEHKAMCKSL 423
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BLAST of mRNA_S-firma_F_contig10876.1162.1 vs. uniprot
Match: A0A409XQ69_PSICY (MYND-type domain-containing protein n=1 Tax=Psilocybe cyanescens TaxID=93625 RepID=A0A409XQ69_PSICY)

HSP 1 Score: 61.6 bits (148), Expect = 1.090e-9
Identity = 22/50 (44.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 SLHAVTHSPHCVVCGRPAANKCSRCKSVAYCSRACQKRHWRVHKQTCNPL 150
            +L  +T+ P C VCG+   ++C +C SV YCS+ CQ+ HW+ HK+TC  +
Sbjct:  233 NLGKLTNDPGCEVCGKKNTSRCMQCMSVVYCSKNCQRAHWKTHKKTCKSI 282
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BLAST of mRNA_S-firma_F_contig10876.1162.1 vs. uniprot
Match: A0A5E3WGG6_9AGAM (MYND-type domain-containing protein n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3WGG6_9AGAM)

HSP 1 Score: 61.6 bits (148), Expect = 1.100e-9
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:   13 VTHSPHCVVCGRPAANKCSRCKSVAYCSRACQKRHWRVHKQTCN 144
            VTH+P C VCG  A   CS CK   YCS ACQK HW+ HK+ C 
Sbjct:  244 VTHNPGCAVCGSAAVKTCSGCKIERYCSSACQKAHWKHHKEFCR 287
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BLAST of mRNA_S-firma_F_contig10876.1162.1 vs. uniprot
Match: F0Y8H0_AURAN (MYND-type domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8H0_AURAN)

HSP 1 Score: 57.0 bits (136), Expect = 1.750e-9
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   25 PHCVVCGR-PAANKCSRCKSVAYCSRACQKRHWRVHKQTCNP 147
            P C  CG  PA N+CSRCK+V +CSRACQ+  W  H++TC P
Sbjct:   25 PSCFHCGAAPATNRCSRCKAVHFCSRACQQSAWPQHRRTCAP 66
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BLAST of mRNA_S-firma_F_contig10876.1162.1 vs. uniprot
Match: A0A812Y2D2_9DINO (UBP19 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812Y2D2_9DINO)

HSP 1 Score: 60.8 bits (146), Expect = 2.070e-9
Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:   31 CVVCGRPAANKCSRCKSVAYCSRACQKRHWRVHKQTCNP 147
            C  CGR A  +C RCK  AYC +ACQ +HW+VHK  C P
Sbjct:  105 CAACGRTAKTQCGRCKKEAYCDKACQAQHWKVHKAVCRP 143
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BLAST of mRNA_S-firma_F_contig10876.1162.1 vs. uniprot
Match: A0A6A2XDA6_HIBSY (Ubiquitin carboxyl-terminal hydrolase 18 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XDA6_HIBSY)

HSP 1 Score: 60.8 bits (146), Expect = 2.070e-9
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    1 SLHAVTHSPHCVVCGRPAANKCSRCKSVAYCSRACQKRHWRVHKQTCN 144
            S+   T    C VC  PA+  CSRCKSV YCS ACQ+ HW+VHK  C 
Sbjct:    3 SIPMDTELSPCEVCSNPASKVCSRCKSVRYCSPACQQTHWKVHKTKCK 50
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BLAST of mRNA_S-firma_F_contig10876.1162.1 vs. uniprot
Match: UPI0006250D86 (SET domain-containing protein SmydA-8-like n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI0006250D86)

HSP 1 Score: 59.7 bits (143), Expect = 5.270e-9
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   31 CVVCGRPAANKCSRCKSVAYCSRACQKRHWRVHKQTCN 144
            CVVCG PA  KCS CKSV YCSR  QK HW+VH + C+
Sbjct:    9 CVVCGIPAEQKCSACKSVFYCSRQHQKSHWKVHAKKCS 46
[Close]
BLAST of mRNA_S-firma_F_contig10876.1162.1 vs. uniprot
Match: A0A5C7I1P4_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7I1P4_9ROSI)

HSP 1 Score: 59.7 bits (143), Expect = 5.300e-9
Identity = 26/48 (54.17%), Postives = 28/48 (58.33%), Query Frame = 1 
Query:   25 PHCVVCGRPAANKCSRCKSVAYCSRACQKRHWRV-HKQTCNPLLIDVA 165
            P CV CG P   KCSRCKSV YCS  CQK HW   HK  C     ++A
Sbjct:   74 PSCVACGSPGVKKCSRCKSVRYCSEDCQKTHWHSQHKTECKDHAKEMA 121
[Close]
BLAST of mRNA_S-firma_F_contig10876.1162.1 vs. uniprot
Match: UPI0018AEC354 (ubiquitin carboxyl-terminal hydrolase 18-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AEC354)

HSP 1 Score: 59.3 bits (142), Expect = 7.250e-9
Identity = 24/41 (58.54%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:   31 CVVCGRPAANKCSRCKSVAYCSRACQKRHWRV-HKQTCNPL 150
            C VCG P   KCSRCKSV YCS+ CQ +HW   HKQ C  +
Sbjct:   64 CAVCGEPGTKKCSRCKSVLYCSQVCQAKHWGADHKQKCKQI 104
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10876.1162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C774F782.300e-1051.16zinc finger MYND domain-containing protein 10-like... [more]
A0A0D7BSV8_9AGAR4.330e-1050.00MYND-type domain-containing protein n=1 Tax=Cylind... [more]
A0A409XQ69_PSICY1.090e-944.00MYND-type domain-containing protein n=1 Tax=Psiloc... [more]
A0A5E3WGG6_9AGAM1.100e-956.82MYND-type domain-containing protein n=1 Tax=Peniop... [more]
F0Y8H0_AURAN1.750e-957.14MYND-type domain-containing protein (Fragment) n=1... [more]
A0A812Y2D2_9DINO2.070e-956.41UBP19 protein n=1 Tax=Symbiodinium sp. CCMP2456 Ta... [more]
A0A6A2XDA6_HIBSY2.070e-954.17Ubiquitin carboxyl-terminal hydrolase 18 n=1 Tax=H... [more]
UPI0006250D865.270e-965.79SET domain-containing protein SmydA-8-like n=1 Tax... [more]
A0A5C7I1P4_9ROSI5.300e-954.17Uncharacterized protein n=1 Tax=Acer yangbiense Ta... [more]
UPI0018AEC3547.250e-958.54ubiquitin carboxyl-terminal hydrolase 18-like n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10876contigS-firma_F_contig10876:666..833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog59894.ENSFALP00000009390
Preferred nameZMYND10
PFAMszf-MYND
Max annot lvl33208|Metazoa
GOsGO:0000226,GO:0001578,GO:0003008,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007600,GO:0007605,GO:0008150,GO:0008270,GO:0009987,GO:0010638,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0019230,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0031344,GO:0031346,GO:0032501,GO:0033043,GO:0034451,GO:0034622,GO:0035082,GO:0036158,GO:0036159,GO:0036477,GO:0040011,GO:0043025,GO:0043167,GO:0043169,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044458,GO:0044459,GO:0044464,GO:0044782,GO:0045177,GO:0045724,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0048870,GO:0050789,GO:0050794,GO:0050877,GO:0050884,GO:0050905,GO:0050954,GO:0051128,GO:0051130,GO:0051179,GO:0051674,GO:0060271,GO:0060491,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0071944,GO:0097458,GO:0097722,GO:0098590,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:1902017,GO:1902115,GO:1902117,GO:1905503,GO:1905505
Evalue6.95e-11
EggNOG OGs28JQ5@1|root,2QS3F@2759|Eukaryota,39DB7@33154|Opisthokonta,3BCQK@33208|Metazoa,3D38Y@33213|Bilateria,4838Y@7711|Chordata,4925A@7742|Vertebrata,4GTC0@8782|Aves
Descriptionzinc finger
COG categoryS
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.1681228-CDS-S-firma_F_contig10876:665..8331622815631.1681228-CDS-S-firma_F_contig10876:665..833Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10876 666..833 +
1696949466.4512625-CDS-S-firma_F_contig10876:665..8331696949466.4512625-CDS-S-firma_F_contig10876:665..833Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10876 666..833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10876.1162.1prot_S-firma_F_contig10876.1162.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10876 666..833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10876.1162.1

>prot_S-firma_F_contig10876.1162.1 ID=prot_S-firma_F_contig10876.1162.1|Name=mRNA_S-firma_F_contig10876.1162.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=56bp
SLHAVTHSPHCVVCGRPAANKCSRCKSVAYCSRACQKRHWRVHKQTCNPL
LIDVA*
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mRNA from alignment at S-firma_F_contig10876:666..833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10876.1162.1 ID=mRNA_S-firma_F_contig10876.1162.1|Name=mRNA_S-firma_F_contig10876.1162.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=168bp|location=Sequence derived from alignment at S-firma_F_contig10876:666..833+ (Sphaerotrichia firma ET2_F female)
TCACTCCACGCCGTCACCCACAGCCCGCACTGCGTGGTTTGCGGCCGGCC
AGCGGCGAACAAGTGCTCACGGTGCAAGTCCGTCGCTTACTGCTCCCGTG
CTTGCCAGAAGCGGCACTGGCGTGTGCACAAACAGACGTGCAACCCACTG
TTGATAGATGTAGCTTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10876:666..833+

>mRNA_S-firma_F_contig10876.1162.1 ID=mRNA_S-firma_F_contig10876.1162.1|Name=mRNA_S-firma_F_contig10876.1162.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=336bp|location=Sequence derived from alignment at S-firma_F_contig10876:666..833+ (Sphaerotrichia firma ET2_F female)
TCACTCCACGCCGTCACCCACAGCCCGCACTGCGTGGTTTGCGGCCGGCC
AGCGGCGAACAAGTGCTCACGGTGCAAGTCCGTCGCTTACTGCTCCCGTG
CTTGCCAGAAGCGGCACTGGCGTGTGCACAAACAGACGTGCAACCCACTG
TTGATAGATGTAGCTTAGTCACTCCACGCCGTCACCCACAGCCCGCACTG
CGTGGTTTGCGGCCGGCCAGCGGCGAACAAGTGCTCACGGTGCAAGTCCG
TCGCTTACTGCTCCCGTGCTTGCCAGAAGCGGCACTGGCGTGTGCACAAA
CAGACGTGCAACCCACTGTTGATAGATGTAGCTTAG
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