mRNA_S-firma_F_contig10874.1161.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10874.1161.1
Unique NamemRNA_S-firma_F_contig10874.1161.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10874.1161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10874contigS-firma_F_contig10874:749..3668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2349
Cds size2349
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10874.1161.1prot_S-firma_F_contig10874.1161.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10874 749..3668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.1070137-CDS-S-firma_F_contig10874:748..29201622815631.1070137-CDS-S-firma_F_contig10874:748..2920Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10874 749..2920 +
1696949466.4048831-CDS-S-firma_F_contig10874:748..29201696949466.4048831-CDS-S-firma_F_contig10874:748..2920Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10874 749..2920 +
1622815631.1203895-CDS-S-firma_F_contig10874:3356..34071622815631.1203895-CDS-S-firma_F_contig10874:3356..3407Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10874 3357..3407 +
1696949466.4218402-CDS-S-firma_F_contig10874:3356..34071696949466.4218402-CDS-S-firma_F_contig10874:3356..3407Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10874 3357..3407 +
1622815631.1332214-CDS-S-firma_F_contig10874:3542..36681622815631.1332214-CDS-S-firma_F_contig10874:3542..3668Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10874 3543..3668 +
1696949466.436404-CDS-S-firma_F_contig10874:3542..36681696949466.436404-CDS-S-firma_F_contig10874:3542..3668Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10874 3543..3668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10874.1161.1

>prot_S-firma_F_contig10874.1161.1 ID=prot_S-firma_F_contig10874.1161.1|Name=mRNA_S-firma_F_contig10874.1161.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=783bp
PSNQTGAGRTATGAPAPTATTTGGGGAAPLRPNNGQDTAAATTAAATTAA
SKGKKPTTGGPRKKGRLHLPKARVGDVEANGTQPAAAAASSEKAGVAAAA
ATAKEKAKEKAKEKAKAKSTKPGKGRAPKKAASAVRSPKSPKAGATASVW
QGCGFTGVGGASGPTAAGAADADATAAATAAAVADAADAAAAAAAAADAT
AATAAAAVADATAVAVQETTDDLPSGKSSAGKETAKTTGEGTAVDLSAGG
DGGVDGDGSEDAAATPDASPAANDGTGGRGIAGDLSGVAQLGSAATPAAA
AAAAEAAAEAEVEVAEASPPSAVVQDLAAVARAAEEEPPAAGPSKRDGVS
GADGSSTSPTASETAARAAAATTVTPVNEAAAASGTASTTTTPAAAAGVL
EPGTPAVEGAPAAAVNGDAPAPPPPGGDDDGAPGSAAARDQACVSDAVGS
GVDARGDGAATESVAAGDGDGDGDGAASSSPAQVSTTTTAAAGRVSKRVA
ARAAEQAKAAAASAAAAAEAARAAAAAAAAVAGAKETRRKRRKETASTTG
TGTTAAAAAPTRKSSPPGRTAAGKNTAGLGRGAGVAGAVGAPAKSEGLGL
AAGGVKTRVIPGTLSPSPRAAVAAAAAATAGSTKPTKIASIFLPRSGGGA
GAGASGSGSSGGTGAAAAAPKLAPLFMPKRKVGAGGTSGDGGGGGGVSGE
GGGGSQKKRQRENPPPSPSPPPSNVMDVEDDSDDSDSSNATRAEGHRGGS
RRQRGVPAGKSEGVGGGQRGDTVDLAGEDEDGG
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mRNA from alignment at S-firma_F_contig10874:749..3668+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10874.1161.1 ID=mRNA_S-firma_F_contig10874.1161.1|Name=mRNA_S-firma_F_contig10874.1161.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2920bp|location=Sequence derived from alignment at S-firma_F_contig10874:749..3668+ (Sphaerotrichia firma ET2_F female)
CCCTCGAACCAAACCGGGGCAGGGCGCACGGCAACCGGAGCGCCAGCACC
AACGGCTACTACTACCGGCGGCGGCGGCGCAGCTCCCCTCCGGCCCAACA
ACGGGCAGGACACCGCCGCCGCGACTACCGCCGCCGCCACTACCGCCGCC
AGCAAGGGCAAGAAACCGACAACCGGAGGCCCTAGGAAGAAGGGCAGGCT
CCACCTCCCCAAGGCTAGGGTCGGAGACGTCGAGGCCAACGGGACGCAGC
CGGCGGCGGCGGCGGCTTCCTCCGAGAAGGCCGGTGTCGCGGCGGCGGCG
GCGACGGCGAAGGAAAAGGCGAAGGAAAAGGCGAAGGAAAAGGCGAAGGC
GAAGTCTACCAAGCCCGGGAAGGGGAGAGCGCCCAAGAAGGCCGCCTCGG
CCGTCAGATCTCCGAAATCTCCGAAGGCGGGGGCCACGGCGAGCGTCTGG
CAAGGGTGCGGGTTCACCGGCGTTGGCGGGGCTTCCGGCCCTACCGCTGC
TGGTGCTGCTGATGCTGATGCTACTGCTGCTGCTACTGCGGCTGCTGTTG
CTGACGCGGCTGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGACGCCACT
GCTGCTACTGCCGCGGCCGCTGTTGCTGATGCTACCGCTGTTGCGGTGCA
AGAAACGACGGACGACTTGCCCTCGGGGAAGTCATCGGCGGGCAAGGAGA
CCGCAAAAACCACGGGGGAGGGGACGGCCGTCGACTTGTCGGCGGGCGGT
GACGGCGGCGTTGACGGAGACGGGAGCGAAGACGCCGCCGCGACACCTGA
CGCTTCTCCCGCGGCAAACGACGGAACCGGGGGGCGGGGGATTGCCGGAG
ATCTTAGCGGCGTTGCTCAGCTGGGGTCGGCGGCTACACCGGCGGCGGCG
GCGGCGGCGGCGGAGGCGGCAGCGGAGGCGGAGGTGGAGGTGGCCGAAGC
TTCGCCGCCGTCGGCGGTCGTGCAAGATTTAGCGGCGGTAGCACGGGCAG
CCGAGGAGGAGCCGCCAGCAGCGGGACCAAGCAAGAGGGACGGTGTGAGC
GGTGCCGATGGGAGCAGCACGAGCCCCACCGCGTCTGAGACCGCAGCACG
GGCTGCGGCTGCTACTACCGTCACTCCGGTGAATGAGGCTGCCGCCGCAT
CAGGAACGGCGTCGACAACGACGACGCCGGCGGCGGCGGCGGGGGTTCTT
GAACCGGGTACACCCGCCGTCGAAGGGGCACCGGCGGCTGCGGTCAACGG
CGACGCTCCGGCTCCTCCTCCTCCTGGGGGTGACGACGACGGTGCCCCTG
GTTCGGCCGCTGCGCGAGATCAAGCCTGCGTATCCGACGCCGTTGGTAGT
GGCGTCGATGCCCGCGGTGATGGCGCTGCGACCGAAAGTGTGGCGGCTGG
TGACGGTGATGGCGATGGCGATGGTGCTGCTTCTAGCAGTCCCGCCCAGG
TCAGCACGACGACCACGGCGGCGGCAGGTCGGGTGTCCAAGCGCGTGGCG
GCCAGAGCCGCAGAGCAGGCAAAGGCTGCCGCCGCAAGCGCCGCGGCCGC
AGCGGAAGCGGCACGAGCGGCGGCGGCGGCGGCGGCGGCGGTCGCGGGAG
CAAAGGAAACCCGCCGCAAGCGCCGCAAGGAAACCGCCTCCACCACCGGC
ACCGGCACCACCGCCGCCGCAGCGGCCCCGACGAGAAAAAGCAGCCCACC
CGGCAGGACGGCGGCGGGCAAGAATACTGCCGGCTTGGGACGCGGCGCGG
GAGTAGCAGGAGCGGTAGGGGCCCCCGCGAAGTCCGAGGGTTTGGGCTTG
GCCGCCGGGGGTGTCAAGACTCGCGTCATCCCGGGGACCCTCTCTCCGTC
TCCCCGGGCGGCGGTGGCGGCGGCGGCGGCGGCGACGGCGGGGTCGACCA
AGCCCACCAAGATAGCCTCGATTTTTCTGCCGAGGTCTGGCGGTGGTGCC
GGCGCAGGCGCTAGCGGCAGCGGCAGCAGCGGAGGCACGGGTGCCGCTGC
TGCTGCCCCGAAGCTGGCGCCGCTGTTCATGCCCAAGAGGAAAGTTGGCG
CGGGAGGTACAAGCGGCGACGGCGGCGGCGGCGGTGGCGTTAGTGGCGAG
GGTGGTGGTGGCAGCCAAAAAAAGAGGCAGAGGGAAAACCCGCCGCCGTC
GCCGTCGCCGCCGCCTTCAAACGTCGAGGTGAGGTTTCGGAAATATTGGC
GTACGGATAACTATCGTCCTGGACAACTAAACGCAACTGTTGTGGTATTT
GTTAGTTGTCTTTGTGCAGGGTGTGCTGAAGAGGGTCGTCGCCGTACGTA
GTACCGTGTGTGTTAGCGGTGGCCGGTGGCCGGTTGTGTTGACCTGACTG
GGGCTCGCACTGCGTCTCCGGCACAAGATGGATGCCACTCGAGCTGTTCG
AAAAGGAGCTCTAACTCGGCACGGCGTGCTTCGTTTGGAACGCGCCAGCT
GCAGCCGCACGACACCCTCTGCTATTGCAGCTCGGCTCGTGCACATCTTC
GCGCGCCGCCGCCGCCGACTATACAAACAATGCTGGTGTGCCGTTTCCGA
CGAAAATCCAATCGATTCACCCGCGGCCCGCCCGCCGCCCCTGCCCGGTC
GGAGACAGGTGATGGACGTGGAAGACGACTCCGACGACTCCGACAGCAGC
AACGCCACCGTCGCTGTCCACGAAGAAGGCGAGAACGAGGACGACTTCGT
AGACTTCGTGGACGCCACCACCACCAACACCACCGCCAAAGGCGGCAACA
ACGGTGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCAAGCGCGCG
GAGGGGCACCGCGGAGGAAGTCGGAGACAGCGGGGGGTACCCGCGGGAAA
GAGCGAGGGTGTCGGAGGGGGGCAGCGCGGCGACACGGTCGACCTCGCGG
GAGAGGACGAGGACGGCGGT
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Coding sequence (CDS) from alignment at S-firma_F_contig10874:749..3668+

>mRNA_S-firma_F_contig10874.1161.1 ID=mRNA_S-firma_F_contig10874.1161.1|Name=mRNA_S-firma_F_contig10874.1161.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=4698bp|location=Sequence derived from alignment at S-firma_F_contig10874:749..3668+ (Sphaerotrichia firma ET2_F female)
CCCTCGAACCAAACCGGGGCAGGGCGCACGGCAACCGGAGCGCCAGCACC
AACGGCTACTACTACCGGCGGCGGCGGCGCAGCTCCCCTCCGGCCCAACA
ACGGGCAGGACACCGCCGCCGCGACTACCGCCGCCGCCACTACCGCCGCC
AGCAAGGGCAAGAAACCGACAACCGGAGGCCCTAGGAAGAAGGGCAGGCT
CCACCTCCCCAAGGCTAGGGTCGGAGACGTCGAGGCCAACGGGACGCAGC
CGGCGGCGGCGGCGGCTTCCTCCGAGAAGGCCGGTGTCGCGGCGGCGGCG
GCGACGGCGAAGGAAAAGGCGAAGGAAAAGGCGAAGGAAAAGGCGAAGGC
GAAGTCTACCAAGCCCGGGAAGGGGAGAGCGCCCAAGAAGGCCGCCTCGG
CCGTCAGATCTCCGAAATCTCCGAAGGCGGGGGCCACGGCGAGCGTCTGG
CAAGGGTGCGGGTTCACCGGCGTTGGCGGGGCTTCCGGCCCTACCGCTGC
TGGTGCTGCTGATGCTGATGCTACTGCTGCTGCTACTGCGGCTGCTGTTG
CTGACGCGGCTGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGACGCCACT
GCTGCTACTGCCGCGGCCGCTGTTGCTGATGCTACCGCTGTTGCGGTGCA
AGAAACGACGGACGACTTGCCCTCGGGGAAGTCATCGGCGGGCAAGGAGA
CCGCAAAAACCACGGGGGAGGGGACGGCCGTCGACTTGTCGGCGGGCGGT
GACGGCGGCGTTGACGGAGACGGGAGCGAAGACGCCGCCGCGACACCTGA
CGCTTCTCCCGCGGCAAACGACGGAACCGGGGGGCGGGGGATTGCCGGAG
ATCTTAGCGGCGTTGCTCAGCTGGGGTCGGCGGCTACACCGGCGGCGGCG
GCGGCGGCGGCGGAGGCGGCAGCGGAGGCGGAGGTGGAGGTGGCCGAAGC
TTCGCCGCCGTCGGCGGTCGTGCAAGATTTAGCGGCGGTAGCACGGGCAG
CCGAGGAGGAGCCGCCAGCAGCGGGACCAAGCAAGAGGGACGGTGTGAGC
GGTGCCGATGGGAGCAGCACGAGCCCCACCGCGTCTGAGACCGCAGCACG
GGCTGCGGCTGCTACTACCGTCACTCCGGTGAATGAGGCTGCCGCCGCAT
CAGGAACGGCGTCGACAACGACGACGCCGGCGGCGGCGGCGGGGGTTCTT
GAACCGGGTACACCCGCCGTCGAAGGGGCACCGGCGGCTGCGGTCAACGG
CGACGCTCCGGCTCCTCCTCCTCCTGGGGGTGACGACGACGGTGCCCCTG
GTTCGGCCGCTGCGCGAGATCAAGCCTGCGTATCCGACGCCGTTGGTAGT
GGCGTCGATGCCCGCGGTGATGGCGCTGCGACCGAAAGTGTGGCGGCTGG
TGACGGTGATGGCGATGGCGATGGTGCTGCTTCTAGCAGTCCCGCCCAGG
TCAGCACGACGACCACGGCGGCGGCAGGTCGGGTGTCCAAGCGCGTGGCG
GCCAGAGCCGCAGAGCAGGCAAAGGCTGCCGCCGCAAGCGCCGCGGCCGC
AGCGGAAGCGGCACGAGCGGCGGCGGCGGCGGCGGCGGCGGTCGCGGGAG
CAAAGGAAACCCGCCGCAAGCGCCGCAAGGAAACCGCCTCCACCACCGGC
ACCGGCACCACCGCCGCCGCAGCGGCCCCGACGAGAAAAAGCAGCCCACC
CGGCAGGACGGCGGCGGGCAAGAATACTGCCGGCTTGGGACGCGGCGCGG
GAGTAGCAGGAGCGGTAGGGGCCCCCGCGAAGTCCGAGGGTTTGGGCTTG
GCCGCCGGGGGTGTCAAGACTCGCGTCATCCCGGGGACCCTCTCTCCGTC
TCCCCGGGCGGCGGTGGCGGCGGCGGCGGCGGCGACGGCGGGGTCGACCA
AGCCCACCAAGATAGCCTCGATTTTTCTGCCGAGGTCTGGCGGTGGTGCC
GGCGCAGGCGCTAGCGGCAGCGGCAGCAGCGGAGGCACGGGTGCCGCTGC
TGCTGCCCCGAAGCTGGCGCCGCTGTTCATGCCCAAGAGGAAAGTTGGCG
CGGGAGGTACAAGCGGCGACGGCGGCGGCGGCGGTGGCGTTAGTGGCGAG
GGTGGTGGTGGCAGCCAAAAAAAGAGGCAGAGGGAAAACCCGCCGCCGTC
GCCGTCGCCGCCGCCTTCAAACCCCTCGAACCAAACCGGGGCAGGGCGCA
CGGCAACCGGAGCGCCAGCACCAACGGCTACTACTACCGGCGGCGGCGGC
GCAGCTCCCCTCCGGCCCAACAACGGGCAGGACACCGCCGCCGCGACTAC
CGCCGCCGCCACTACCGCCGCCAGCAAGGGCAAGAAACCGACAACCGGAG
GCCCTAGGAAGAAGGGCAGGCTCCACCTCCCCAAGGCTAGGGTCGGAGAC
GTCGAGGCCAACGGGACGCAGCCGGCGGCGGCGGCGGCTTCCTCCGAGAA
GGCCGGTGTCGCGGCGGCGGCGGCGACGGCGAAGGAAAAGGCGAAGGAAA
AGGCGAAGGAAAAGGCGAAGGCGAAGTCTACCAAGCCCGGGAAGGGGAGA
GCGCCCAAGAAGGCCGCCTCGGCCGTCAGATCTCCGAAATCTCCGAAGGC
GGGGGCCACGGCGAGCGTCTGGCAAGGGTGCGGGTTCACCGGCGTTGGCG
GGGCTTCCGGCCCTACCGCTGCTGGTGCTGCTGATGCTGATGCTACTGCT
GCTGCTACTGCGGCTGCTGTTGCTGACGCGGCTGATGCTGCTGCTGCTGC
TGCTGCTGCTGCTGACGCCACTGCTGCTACTGCCGCGGCCGCTGTTGCTG
ATGCTACCGCTGTTGCGGTGCAAGAAACGACGGACGACTTGCCCTCGGGG
AAGTCATCGGCGGGCAAGGAGACCGCAAAAACCACGGGGGAGGGGACGGC
CGTCGACTTGTCGGCGGGCGGTGACGGCGGCGTTGACGGAGACGGGAGCG
AAGACGCCGCCGCGACACCTGACGCTTCTCCCGCGGCAAACGACGGAACC
GGGGGGCGGGGGATTGCCGGAGATCTTAGCGGCGTTGCTCAGCTGGGGTC
GGCGGCTACACCGGCGGCGGCGGCGGCGGCGGCGGAGGCGGCAGCGGAGG
CGGAGGTGGAGGTGGCCGAAGCTTCGCCGCCGTCGGCGGTCGTGCAAGAT
TTAGCGGCGGTAGCACGGGCAGCCGAGGAGGAGCCGCCAGCAGCGGGACC
AAGCAAGAGGGACGGTGTGAGCGGTGCCGATGGGAGCAGCACGAGCCCCA
CCGCGTCTGAGACCGCAGCACGGGCTGCGGCTGCTACTACCGTCACTCCG
GTGAATGAGGCTGCCGCCGCATCAGGAACGGCGTCGACAACGACGACGCC
GGCGGCGGCGGCGGGGGTTCTTGAACCGGGTACACCCGCCGTCGAAGGGG
CACCGGCGGCTGCGGTCAACGGCGACGCTCCGGCTCCTCCTCCTCCTGGG
GGTGACGACGACGGTGCCCCTGGTTCGGCCGCTGCGCGAGATCAAGCCTG
CGTATCCGACGCCGTTGGTAGTGGCGTCGATGCCCGCGGTGATGGCGCTG
CGACCGAAAGTGTGGCGGCTGGTGACGGTGATGGCGATGGCGATGGTGCT
GCTTCTAGCAGTCCCGCCCAGGTCAGCACGACGACCACGGCGGCGGCAGG
TCGGGTGTCCAAGCGCGTGGCGGCCAGAGCCGCAGAGCAGGCAAAGGCTG
CCGCCGCAAGCGCCGCGGCCGCAGCGGAAGCGGCACGAGCGGCGGCGGCG
GCGGCGGCGGCGGTCGCGGGAGCAAAGGAAACCCGCCGCAAGCGCCGCAA
GGAAACCGCCTCCACCACCGGCACCGGCACCACCGCCGCCGCAGCGGCCC
CGACGAGAAAAAGCAGCCCACCCGGCAGGACGGCGGCGGGCAAGAATACT
GCCGGCTTGGGACGCGGCGCGGGAGTAGCAGGAGCGGTAGGGGCCCCCGC
GAAGTCCGAGGGTTTGGGCTTGGCCGCCGGGGGTGTCAAGACTCGCGTCA
TCCCGGGGACCCTCTCTCCGTCTCCCCGGGCGGCGGTGGCGGCGGCGGCG
GCGGCGACGGCGGGGTCGACCAAGCCCACCAAGATAGCCTCGATTTTTCT
GCCGAGGTCTGGCGGTGGTGCCGGCGCAGGCGCTAGCGGCAGCGGCAGCA
GCGGAGGCACGGGTGCCGCTGCTGCTGCCCCGAAGCTGGCGCCGCTGTTC
ATGCCCAAGAGGAAAGTTGGCGCGGGAGGTACAAGCGGCGACGGCGGCGG
CGGCGGTGGCGTTAGTGGCGAGGGTGGTGGTGGCAGCCAAAAAAAGAGGC
AGAGGGAAAACCCGCCGCCGTCGCCGTCGCCGCCGCCTTCAAACGTGATG
GACGTGGAAGACGACTCCGACGACTCCGACAGCAGCAACGCCACCGTGAT
GGACGTGGAAGACGACTCCGACGACTCCGACAGCAGCAACGCCACCCGCG
CGGAGGGGCACCGCGGAGGAAGTCGGAGACAGCGGGGGGTACCCGCGGGA
AAGAGCGAGGGTGTCGGAGGGGGGCAGCGCGGCGACACGGTCGACCTCGC
GGGAGAGGACGAGGACGGCGGTCGCGCGGAGGGGCACCGCGGAGGAAGTC
GGAGACAGCGGGGGGTACCCGCGGGAAAGAGCGAGGGTGTCGGAGGGGGG
CAGCGCGGCGACACGGTCGACCTCGCGGGAGAGGACGAGGACGGCGGT
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