mRNA_S-firma_F_contig1087.1159.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1087.1159.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE) HSP 1 Score: 246 bits (628), Expect = 3.990e-79 Identity = 124/155 (80.00%), Postives = 134/155 (86.45%), Query Frame = 1
Query: 154 RLQGKVGKSEGDLIREINHRTKAAWACVKRYAMELFDRPGAPIRLKIRLFQAEAVATLLYGCMTWSPRREHYRLLLQTIHHRLHLRVIGYRRRRGTYRQLSHAQALKKVGCQSVEPTVRQRRLLFAGAVARQPDGRLPKRLMFGGLAGGENPGRG 618
R G + +GDL REINHR+KAAWAC+KRYA ELFDRPGAP RLK RL QAEAV LLYGCMTWSPRR HY +L QT HHRL LRVIGYRR+RGTYRQLS+AQALK+VGCQSVE TVRQRRLLFAGAVARQPDGRLPKRLMFG L GGE+PG+G
Sbjct: 58 RYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGML-QTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 211
BLAST of mRNA_S-firma_F_contig1087.1159.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE) HSP 1 Score: 246 bits (628), Expect = 5.260e-78 Identity = 124/155 (80.00%), Postives = 134/155 (86.45%), Query Frame = 1
Query: 154 RLQGKVGKSEGDLIREINHRTKAAWACVKRYAMELFDRPGAPIRLKIRLFQAEAVATLLYGCMTWSPRREHYRLLLQTIHHRLHLRVIGYRRRRGTYRQLSHAQALKKVGCQSVEPTVRQRRLLFAGAVARQPDGRLPKRLMFGGLAGGENPGRG 618
R G + +GDL REINHR+KAAWAC+KRYA ELFDRPGAP RLK RL QAEAV LLYGCMTWSPRR HY +L QT HHRL LRVIGYRR+RGTYRQLS+AQALK+VGCQSVE TVRQRRLLFAGAVARQPDGRLPKRLMFG L GGE+PG+G
Sbjct: 77 RYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGML-QTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 230
BLAST of mRNA_S-firma_F_contig1087.1159.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE) HSP 1 Score: 244 bits (624), Expect = 7.310e-78 Identity = 123/155 (79.35%), Postives = 134/155 (86.45%), Query Frame = 1
Query: 154 RLQGKVGKSEGDLIREINHRTKAAWACVKRYAMELFDRPGAPIRLKIRLFQAEAVATLLYGCMTWSPRREHYRLLLQTIHHRLHLRVIGYRRRRGTYRQLSHAQALKKVGCQSVEPTVRQRRLLFAGAVARQPDGRLPKRLMFGGLAGGENPGRG 618
R G + +GDL REINHR+KAAWAC++RYA ELFDRPGAP RLK RL QAEAV LLYGCMTWSPRR HY +L QT HHRL LRVIGYRR+RGTYRQLS+AQALK+VGCQSVE TVRQRRLLFAGAVARQPDGRLPKRLMFG L GGE+PG+G
Sbjct: 109 RYLGGLINEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGML-QTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 262
BLAST of mRNA_S-firma_F_contig1087.1159.1 vs. uniprot
Match: A0A6H5KLC4_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE) HSP 1 Score: 248 bits (633), Expect = 2.870e-77 Identity = 125/155 (80.65%), Postives = 136/155 (87.74%), Query Frame = 1
Query: 154 RLQGKVGKSEGDLIREINHRTKAAWACVKRYAMELFDRPGAPIRLKIRLFQAEAVATLLYGCMTWSPRREHYRLLLQTIHHRLHLRVIGYRRRRGTYRQLSHAQALKKVGCQSVEPTVRQRRLLFAGAVARQPDGRLPKRLMFGGLAGGENPGRG 618
R G + +GDL REINHR+KAAWAC++RYA ELFDRPGAP RLK RL QAEAVA LLYGCMTWSPRR+HYRLL QT HHRL LRVIGYRR+ GTYRQLS+AQALK+VGCQSVE TVRQRRLLFAGAVARQPDGRLPKRLMFG L GGE+PG+G
Sbjct: 199 RYLGGLINEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVAALLYGCMTWSPRRDHYRLL-QTTHHRLLLRVIGYRRKGGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 352
BLAST of mRNA_S-firma_F_contig1087.1159.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE) HSP 1 Score: 248 bits (634), Expect = 8.980e-76 Identity = 125/155 (80.65%), Postives = 134/155 (86.45%), Query Frame = 1
Query: 154 RLQGKVGKSEGDLIREINHRTKAAWACVKRYAMELFDRPGAPIRLKIRLFQAEAVATLLYGCMTWSPRREHYRLLLQTIHHRLHLRVIGYRRRRGTYRQLSHAQALKKVGCQSVEPTVRQRRLLFAGAVARQPDGRLPKRLMFGGLAGGENPGRG 618
R G + +GDL REINHR+KAAWAC++RYA ELFDRPGAP RLK RL QAEAV LLYGCMTWSPRR HY +L QT HHRL LRVIGYRR+RGTYRQLS+AQALK+VGCQSVE TVRQRRLLFAGAVARQPDGRLPKRLMFG L GGENPGRG
Sbjct: 360 RYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGML-QTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRG 513
BLAST of mRNA_S-firma_F_contig1087.1159.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE) HSP 1 Score: 245 bits (625), Expect = 1.580e-73 Identity = 123/155 (79.35%), Postives = 134/155 (86.45%), Query Frame = 1
Query: 154 RLQGKVGKSEGDLIREINHRTKAAWACVKRYAMELFDRPGAPIRLKIRLFQAEAVATLLYGCMTWSPRREHYRLLLQTIHHRLHLRVIGYRRRRGTYRQLSHAQALKKVGCQSVEPTVRQRRLLFAGAVARQPDGRLPKRLMFGGLAGGENPGRG 618
R G + +GDL REINHR+KAAWAC++RYA ELFDRPGAP RLK RL QAEAV LLYGCMTWSPRR HY +L QT HHRL LRVIGYRR+RGTYRQLS+AQALK+VGCQSVE TVRQRRLLFAGAVARQPDGRLPKRLMFG L GGE+PG+G
Sbjct: 472 RYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGML-QTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 625
BLAST of mRNA_S-firma_F_contig1087.1159.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE) HSP 1 Score: 246 bits (627), Expect = 1.990e-73 Identity = 124/155 (80.00%), Postives = 133/155 (85.81%), Query Frame = 1
Query: 154 RLQGKVGKSEGDLIREINHRTKAAWACVKRYAMELFDRPGAPIRLKIRLFQAEAVATLLYGCMTWSPRREHYRLLLQTIHHRLHLRVIGYRRRRGTYRQLSHAQALKKVGCQSVEPTVRQRRLLFAGAVARQPDGRLPKRLMFGGLAGGENPGRG 618
R G + +GDL REINHR+KAAWAC+KRYA ELFDRPGAP RLK RL QAEAV LLYGCMTWSPRR HY +L QT HHRL LRVIGYRR+RGTYRQLS+AQALK+VGCQSVE TVRQRRLLFAGAVARQPDGRLPKRLMFG L GGE PG+G
Sbjct: 528 RYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGML-QTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEGPGQG 681
BLAST of mRNA_S-firma_F_contig1087.1159.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE) HSP 1 Score: 250 bits (638), Expect = 3.850e-73 Identity = 126/155 (81.29%), Postives = 135/155 (87.10%), Query Frame = 1
Query: 154 RLQGKVGKSEGDLIREINHRTKAAWACVKRYAMELFDRPGAPIRLKIRLFQAEAVATLLYGCMTWSPRREHYRLLLQTIHHRLHLRVIGYRRRRGTYRQLSHAQALKKVGCQSVEPTVRQRRLLFAGAVARQPDGRLPKRLMFGGLAGGENPGRG 618
R G + +GDL REINHR+KAAWAC++RYA ELFDRPGAP RLK RL QAEAVA LLYGCMTWSPRR HY +L QT HHRL LRVIGYRR+RGTYRQLS+AQALK+VGCQSVE TVRQRRLLFAGAVARQPDGRLPKRLMFG L GGENPGRG
Sbjct: 58 RYLGGLINEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVAALLYGCMTWSPRRNHYGML-QTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRG 211
BLAST of mRNA_S-firma_F_contig1087.1159.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 248 bits (632), Expect = 1.090e-72 Identity = 125/155 (80.65%), Postives = 134/155 (86.45%), Query Frame = 1
Query: 154 RLQGKVGKSEGDLIREINHRTKAAWACVKRYAMELFDRPGAPIRLKIRLFQAEAVATLLYGCMTWSPRREHYRLLLQTIHHRLHLRVIGYRRRRGTYRQLSHAQALKKVGCQSVEPTVRQRRLLFAGAVARQPDGRLPKRLMFGGLAGGENPGRG 618
R G + +GDL REINHR+KAAWAC+KRYA ELFDRPGAP RLK RL QAEAV LLYGCMTWSPRR HY +L QT HHRL LRVIGYRR+RGTYRQLS+AQALK+VGCQSVE TVRQRRLLFAGAVARQPDGRLPKRLMFG L GGE+PGRG
Sbjct: 857 RYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGML-QTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRG 1010
BLAST of mRNA_S-firma_F_contig1087.1159.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 246 bits (628), Expect = 8.130e-72 Identity = 124/155 (80.00%), Postives = 134/155 (86.45%), Query Frame = 1
Query: 154 RLQGKVGKSEGDLIREINHRTKAAWACVKRYAMELFDRPGAPIRLKIRLFQAEAVATLLYGCMTWSPRREHYRLLLQTIHHRLHLRVIGYRRRRGTYRQLSHAQALKKVGCQSVEPTVRQRRLLFAGAVARQPDGRLPKRLMFGGLAGGENPGRG 618
R G + +GDL REINHR+KAAWAC+KRYA ELFDRPGAP RLK RL QAEAV LLYGCMTWSPRR HY +L QT HHRL LRVIGYRR+RGTYRQLS+AQALK+VGCQSVE TVRQRRLLFAGAVARQPDGRLPKRLMFG L GGE+PG+G
Sbjct: 1144 RYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGML-QTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 1297 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1087.1159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1087.1159.1 >prot_S-firma_F_contig1087.1159.1 ID=prot_S-firma_F_contig1087.1159.1|Name=mRNA_S-firma_F_contig1087.1159.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=123bp MELFDRPGAPIRLKIRLFQAEAVATLLYGCMTWSPRREHYRLLLQTIHHRback to top mRNA from alignment at S-firma_F_contig1087:1100..2058+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1087.1159.1 ID=mRNA_S-firma_F_contig1087.1159.1|Name=mRNA_S-firma_F_contig1087.1159.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=959bp|location=Sequence derived from alignment at S-firma_F_contig1087:1100..2058+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1087:1100..2058+ >mRNA_S-firma_F_contig1087.1159.1 ID=mRNA_S-firma_F_contig1087.1159.1|Name=mRNA_S-firma_F_contig1087.1159.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=738bp|location=Sequence derived from alignment at S-firma_F_contig1087:1100..2058+ (Sphaerotrichia firma ET2_F female)back to top |