mRNA_S-firma_F_contig10868.1158.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10868.1158.1
Unique NamemRNA_S-firma_F_contig10868.1158.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: A0A5D6XKD7_9STRA (Uncharacterized protein n=25 Tax=Oomycota TaxID=4762 RepID=A0A5D6XKD7_9STRA)

HSP 1 Score: 215 bits (548), Expect = 2.220e-68
Identity = 104/172 (60.47%), Postives = 128/172 (74.42%), Query Frame = 3
Query:    3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKPEKPAGKPLSRKRIALRRLQVGGGI 518
            AK+RG +LRVHFKHCREV+H IKGM L KAK +L  VL+Y++ +PF KFTGGCGRHAQGKL  +PG+  +WPQKAT+  LDL++ AEANAE + LDT KL + H  AN A   RRRTYRAHGRI  YM +PAHIE+IL +K+D V K +      +SRKR A  RL+ GGG+
Sbjct:   15 AKARGSHLRVHFKHCREVSHAIKGMPLSKAKSFLSAVLDYKQAVPFTKFTGGCGRHAQGKLRNAPGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDKLYVSHAQANAAIKQRRRTYRAHGRIGPYMANPAHIELILTEKRDNVQKSDDKKEVKVSRKRQAQLRLKSGGGV 186          
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: A0A6V1UCU8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UCU8_HETAK)

HSP 1 Score: 214 bits (546), Expect = 4.470e-68
Identity = 105/174 (60.34%), Postives = 132/174 (75.86%), Query Frame = 3
Query:    3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKPEKPAGKPL--SRKRIALRRLQVGGGI 518
            +K++G +LRVHFKH REVAH IKGM+L KAK +L+DVL++++ + F KFTGG G HAQGKL K+PGN  RWPQKAT+  LDLL+ AEANAE + LD   LV+ H+  N+AP  RRRTYRAHGRIN YM SPAHIE++L ++   V K E+  GK L  SRK+ A RR+ VGGG+
Sbjct:   14 SKAKGSHLRVHFKHMREVAHNIKGMKLAKAKAFLEDVLQFKQAVTFTKFTGGIGHHAQGKLRKAPGNKCRWPQKATKIVLDLLKNAEANAEVKGLDIESLVVTHIQTNRAPKQRRRTYRAHGRINPYMSSPAHIELLLAEEGSNVAKGEEEEGKQLKLSRKQAARRRVTVGGGV 187          
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: A0A485L8A8_9STRA (Aste57867_17649 protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485L8A8_9STRA)

HSP 1 Score: 214 bits (544), Expect = 8.990e-68
Identity = 105/172 (61.05%), Postives = 128/172 (74.42%), Query Frame = 3
Query:    3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKPEKPAGKPLSRKRIALRRLQVGGGI 518
            AK+RG +LRVH+KHCREV H IKG  L KAKK+L DVLE +  +PF K+TGG GRHAQGKL+ +PG+  RWPQKATR  LDL++ AEANAE + LD  KL I H  AN A   RRRTYRAHGRI  YM +PAHIE+IL +K++ V K E+P    +SRKR A+ RL+ GGG+
Sbjct:   15 AKARGRHLRVHYKHCREVCHTIKGYSLAKAKKFLGDVLEMKAAVPFTKYTGGPGRHAQGKLLNAPGDKCRWPQKATRIILDLVKNAEANAELKGLDVEKLYIAHTQANMAIKQRRRTYRAHGRIGPYMANPAHIELILTEKKENVAKAEEPKAAKVSRKRQAVLRLKSGGGV 186          
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: F0YFA6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFA6_AURAN)

HSP 1 Score: 212 bits (539), Expect = 5.340e-67
Identity = 105/174 (60.34%), Postives = 131/174 (75.29%), Query Frame = 3
Query:    3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKPEKPAGKP---LSRKRIALRRLQVGGG 515
            +K+ G +LR HFKHCREV   IKGM+L KAK +L+DVL++++ + F KFTGGCGRHAQGKL K+ G+ VRWPQKAT+  LDLL+ AEANAE + LD   LV+ H  AN+A   RRRTYRAHGRIN YM SPAHIE++L + Q+PV K E+ A KP   L+RKR A  R++ GGG
Sbjct:   15 SKACGSSLRAHFKHCREVCDNIKGMKLAKAKAFLEDVLQFKQAVAFTKFTGGCGRHAQGKLQKAAGDKVRWPQKATKIVLDLLKNAEANAEMKGLDVDDLVVKHSQANRAQKQRRRTYRAHGRINPYMASPAHIEIVLTKYQEPVKKGEEDAEKPVQKLTRKRQAQLRIKAGGG 188          
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: A0A067CFI1_SAPPC (50S ribosomal protein L22 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CFI1_SAPPC)

HSP 1 Score: 211 bits (538), Expect = 7.100e-67
Identity = 105/172 (61.05%), Postives = 127/172 (73.84%), Query Frame = 3
Query:    3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKPEKPAGKPLSRKRIALRRLQVGGGI 518
            AKSRG +LRVHFKHCREV H IKG+ + KAKK+L+ VLE +  +PF KFTGG GRHAQGK + +PG+  RWPQKAT+  LDL++ AEANAE + LDT KL I H  AN A   RRRTYRAHGRI  YM +PAHIE+IL +K++ V K E  A   +SRKR A  RL+ GGG+
Sbjct:   15 AKSRGSHLRVHFKHCREVCHTIKGLPVGKAKKFLEAVLEKKAAVPFTKFTGGVGRHAQGKTLNAPGDKCRWPQKATKIILDLVKNAEANAELKGLDTDKLYIAHTQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKKENVAKAEDAAPAKISRKRNAQLRLKSGGGV 186          
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: F0WNJ9_9STRA (60S ribosomal protein L172 putative n=2 Tax=Albugo TaxID=65356 RepID=F0WNJ9_9STRA)

HSP 1 Score: 211 bits (538), Expect = 7.830e-67
Identity = 103/173 (59.54%), Postives = 130/173 (75.14%), Query Frame = 3
Query:    3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPK-PEKPAGKPLSRKRIALRRLQVGGGI 518
            AK+RG ++RVHFKHCREVAH IK M L KAK++L DVL+Y++ +PF KFTGGCGRHAQGKL  + G+  +WPQK+T+  LDLL+ AEANAE + L  SKL I HV AN+A   RRRTYRAHGR+  YM  PAH E++L +K+D V K PE+     +SRKR+A  RL+ GGG+
Sbjct:   15 AKARGQHIRVHFKHCREVAHAIKNMNLIKAKRFLSDVLDYKQAVPFTKFTGGCGRHAQGKLRGAAGDKCKWPQKSTKVILDLLKNAEANAEMKGLTLSKLYISHVQANRAVCQRRRTYRAHGRVGPYMSHPAHFELVLTEKRDNVEKAPEEKKQVKVSRKRLAQLRLKSGGGV 187          
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: A0A7S1TQM1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQM1_9STRA)

HSP 1 Score: 209 bits (533), Expect = 4.080e-66
Identity = 102/172 (59.30%), Postives = 128/172 (74.42%), Query Frame = 3
Query:    3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKPEKPAGKPLSRKRIALRRLQVGGGI 518
            AK+RG +LRVHFKHCREV   I+GM+L KAK +L+DVLEY++ +PF KFTGG GRHAQ K +K+PG+  RWPQKA++  LDLL  AEANAE + LDT  L + H   N+AP  RRRTYRAHGRINAYM  PAH+E+IL ++ D V + ++     LSRKR A  RL+ GGG+
Sbjct:   15 AKARGSHLRVHFKHCREVTTTIRGMKLSKAKAFLEDVLEYKQIVPFTKFTGGVGRHAQAKNMKAPGSKGRWPQKASKIVLDLLTNAEANAEVKGLDTDALYVTHTQCNRAPPGRRRTYRAHGRINAYMSQPAHVEIILTEQDDAVARADEEKPLKLSRKRKAQLRLKQGGGV 186          
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: A0A7S2WRP5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRP5_9STRA)

HSP 1 Score: 207 bits (526), Expect = 7.180e-65
Identity = 102/171 (59.65%), Postives = 130/171 (76.02%), Query Frame = 3
Query:    3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKPEKPAGKPLSRKRIALRRLQVGGG 515
            +K++  +LRVHFKH RE+ H IKGM+L KA K+L+DVL+Y++ +PF KFTGG GRHAQ K +K+PG+  RWPQKAT+  LDL++ AEANAE + LDT KL + H  AN+A   RRRTYRAHGRIN YM SPAHIE+IL   +DPV K E  A + L+R+R A  R++VGGG
Sbjct:   30 SKAKASSLRVHFKHTREIMHTIKGMQLAKALKFLEDVLQYKQAVPFTKFTGGIGRHAQLKQMKAPGSKGRWPQKATKVVLDLVKNAEANAETKGLDTDKLFVKHAQANRAQKQRRRTYRAHGRINPYMSSPAHIELILASIEDPVAKAED-APQKLTRRRQAQLRVKVGGG 199          
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: A0A7S3JYP6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYP6_9STRA)

HSP 1 Score: 207 bits (526), Expect = 9.290e-65
Identity = 103/171 (60.23%), Postives = 128/171 (74.85%), Query Frame = 3
Query:    3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKPE--KPAGKPLSRKRIALRRLQVG 509
            +K+ G +LR HFKHCREV + IKGM++ KAKKYL+DVL Y+R I F KFTGG GRHAQGK IK+PG+ VRWPQKAT+  LDLL  AEANAE + +D   LV+ H  AN+AP  RRRTYRAHGRIN YM SPAHIE++L + Q+PV K +  + +   L+RKR A  R++ G
Sbjct:   37 SKACGSSLRCHFKHCREVCNCIKGMKIGKAKKYLEDVLNYKRAIKFTKFTGGVGRHAQGKSIKAPGDKVRWPQKATKIILDLLINAEANAEMKGIDVEDLVVKHAQANRAPKQRRRTYRAHGRINPYMSSPAHIEIVLTKYQEPVAKSQDAQTSLPKLTRKRQAQLRIKAG 207          
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: A0A3R7JUX4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JUX4_9STRA)

HSP 1 Score: 205 bits (522), Expect = 2.040e-64
Identity = 104/173 (60.12%), Postives = 126/173 (72.83%), Query Frame = 3
Query:    3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKP-EKPAGKPLSRKRIALRRLQVGGGI 518
            AK+RG +LRVHFKHCREV+H IKGM L KAK +LQ V EY++ +PF KFTGGCGRHAQGKL  + G+  +WPQKAT+  LDLL+ AEANAE + LDT  L + H  AN A   RRRTYRAHGRI  YM +PAHIE+IL +K+  V K  E+     +SRKR A  RL+ GGG+
Sbjct:   15 AKARGSHLRVHFKHCREVSHAIKGMPLNKAKSFLQAVTEYKQAVPFTKFTGGCGRHAQGKLRGAAGDKCKWPQKATKIILDLLKNAEANAEVKGLDTDLLYVSHAQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKRANVAKAVEEVKTAKVSRKRQAQLRLKSGGGV 187          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6XKD7_9STRA2.220e-6860.47Uncharacterized protein n=25 Tax=Oomycota TaxID=47... [more]
A0A6V1UCU8_HETAK4.470e-6860.34Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A485L8A8_9STRA8.990e-6861.05Aste57867_17649 protein n=4 Tax=Aphanomyces TaxID=... [more]
F0YFA6_AURAN5.340e-6760.34Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A067CFI1_SAPPC7.100e-6761.0550S ribosomal protein L22 n=4 Tax=Saprolegniaceae ... [more]
F0WNJ9_9STRA7.830e-6759.5460S ribosomal protein L172 putative n=2 Tax=Albugo... [more]
A0A7S1TQM1_9STRA4.080e-6659.30Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WRP5_9STRA7.180e-6559.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3JYP6_9STRA9.290e-6560.23Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A3R7JUX4_9STRA2.040e-6460.12Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10868contigS-firma_F_contig10868:3701..4334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog44056.XP_009039150.1
Preferred nameRPL17
PFAMsRibosomal_L22
Max annot lvl2759|Eukaryota
KEGG rclassRC00031,RC00042,RC00773
KEGG koko:K00015,ko:K00474,ko:K02880,ko:K06479,ko:K08267
KEGG ReactionR00717,R01388,R03451
KEGG Pathwayko00310,ko00630,ko01100,ko01110,ko01120,ko03010,ko04150,ko04650,map00310,map00630,map01100,map01110,map01120,map03010,map04150,map04650
KEGG ModuleM00177
GOsGO:0000184,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0007154,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010564,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030684,GO:0030687,GO:0031667,GO:0031668,GO:0031669,GO:0031672,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034198,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042273,GO:0042594,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0045787,GO:0045931,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070180,GO:0070727,GO:0070972,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090068,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099080,GO:0099081,GO:0099512,GO:1900087,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:1990904,GO:1990928,GO:2000045
Evalue1.44e-56
EggNOG OGsCOG0091@1|root,KOG3353@2759|Eukaryota
EC1.1.1.26,1.14.11.8
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko00537,ko01000,ko03011,ko04090,ko04516
Hectar predicted targeting categoryother localisation
Exons2
Model size564
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10868.1158.1prot_S-firma_F_contig10868.1158.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10868 3744..4260 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815630.557106-UTR-S-firma_F_contig10868:3700..37431622815630.557106-UTR-S-firma_F_contig10868:3700..3743Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10868 3701..3743 -
1696949465.9308774-UTR-S-firma_F_contig10868:3700..37431696949465.9308774-UTR-S-firma_F_contig10868:3700..3743Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10868 3701..3743 -
1622815630.599121-UTR-S-firma_F_contig10868:4260..43341622815630.599121-UTR-S-firma_F_contig10868:4260..4334Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10868 4261..4334 -
1696949465.9631317-UTR-S-firma_F_contig10868:4260..43341696949465.9631317-UTR-S-firma_F_contig10868:4260..4334Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10868 4261..4334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815630.5726874-CDS-S-firma_F_contig10868:3743..38861622815630.5726874-CDS-S-firma_F_contig10868:3743..3886Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10868 3744..3886 -
1696949465.9435685-CDS-S-firma_F_contig10868:3743..38861696949465.9435685-CDS-S-firma_F_contig10868:3743..3886Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10868 3744..3886 -
1622815630.5854294-CDS-S-firma_F_contig10868:3956..42601622815630.5854294-CDS-S-firma_F_contig10868:3956..4260Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10868 3957..4260 -
1696949465.9530008-CDS-S-firma_F_contig10868:3956..42601696949465.9530008-CDS-S-firma_F_contig10868:3956..4260Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10868 3957..4260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10868.1158.1

>prot_S-firma_F_contig10868.1158.1 ID=prot_S-firma_F_contig10868.1158.1|Name=mRNA_S-firma_F_contig10868.1158.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=149bp
MELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQK
ATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRI
NAYMRSPAHIEVILVQKQDPVPKPEKPAGKPLSRKRIALRRLQVGGGI*
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mRNA from alignment at S-firma_F_contig10868:3701..4334-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10868.1158.1 ID=mRNA_S-firma_F_contig10868.1158.1|Name=mRNA_S-firma_F_contig10868.1158.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=634bp|location=Sequence derived from alignment at S-firma_F_contig10868:3701..4334- (Sphaerotrichia firma ET2_F female)
GCGCCAAGTCGCGTGGCGACAACCTCCGCGTGCACTTCAAGCACTGCCGC GAGGTGGCCCACTTCATCAAGGGCATGGAGCTGCAGAAGGCCAAGAAGTA CCTGCAGGACGTGCTGGAGTACCGCCGTGGTATTCCGTTTGTGAAGTTCA CGGGTGGCTGCGGCCGCCACGCCCAGGGCAAGCTCATCAAGTCCCCGGGT AACTCCGTGCGGTGGCCGCAGAAGGCGACGCGCCATTTCCTGGACTTGCT CCGCGCCGCGGAGGCCAACGCCGAGGCCCGCTCCCTGGACACCTCCAAGC TGGTCATTGACCACGTCATGGCCAACAAGGCACCTTACATGCGCCGCCGC ACGTACCGTGCCCACGGCCGCATCAACGGTGTGTAGGTTTGACGCTTTCA GGTTGTGAAGGGGGACGCATTGCTGACTCCTGTTGCCGTGTTGTGCAGCC TACATGCGCTCCCCGGCTCACATTGAGGTCATCCTGGTGCAAAAGCAGGA CCCCGTGCCAAAGCCCGAGAAGCCGGCCGGCAAGCCCTTGTCCCGCAAGC GCATTGCCCTCCGCCGCCTCCAGGTCGGCGGCGGCATCTAAAGCCCCACC CACTCCGCAATGGCCACACCCCCCAGCTTCTCGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10868:3701..4334-

>mRNA_S-firma_F_contig10868.1158.1 ID=mRNA_S-firma_F_contig10868.1158.1|Name=mRNA_S-firma_F_contig10868.1158.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=894bp|location=Sequence derived from alignment at S-firma_F_contig10868:3701..4334- (Sphaerotrichia firma ET2_F female)
ATGGAGCTGCAGAAGGCCAAGAAGTACCTGCAGGACGTGCTGGAGTACCG
CCGTGGTATTCCGTTTGTGAAGTTCACGGGTGGCTGCGGCCGCCACGCCC
AGGGCAAGCTCATCAAGTCCCCGGGTAACTCCGTGCGGTGGCCGCAGAAG
GCGACGCGCCATTTCCTGGACTTGCTCCGCGCCGCGGAGGCCAACGCCGA
GGCCCGCTCCCTGGACACCTCCAAGCTGGTCATTGACCACGTCATGGCCA
ACAAGGCACCTTACATGCGCCGCCGCACGTACCGTGCCCACGGCCGCATC
AACGATGGAGCTGCAGAAGGCCAAGAAGTACCTGCAGGACGTGCTGGAGT
ACCGCCGTGGTATTCCGTTTGTGAAGTTCACGGGTGGCTGCGGCCGCCAC
GCCCAGGGCAAGCTCATCAAGTCCCCGGGTAACTCCGTGCGGTGGCCGCA
GAAGGCGACGCGCCATTTCCTGGACTTGCTCCGCGCCGCGGAGGCCAACG
CCGAGGCCCGCTCCCTGGACACCTCCAAGCTGGTCATTGACCACGTCATG
GCCAACAAGGCACCTTACATGCGCCGCCGCACGTACCGTGCCCACGGCCG
CATCAACGCCTACATGCGCTCCCCGGCTCACATTGAGGTCATCCTGGTGC
AAAAGCAGGACCCCGTGCCAAAGCCCGAGAAGCCGGCCGGCAAGCCCTTG
TCCCGCAAGCGCATTGCCCTCCGCCGCCTCCAGGTCGGCGGCGGCATCTA
ACCTACATGCGCTCCCCGGCTCACATTGAGGTCATCCTGGTGCAAAAGCA
GGACCCCGTGCCAAAGCCCGAGAAGCCGGCCGGCAAGCCCTTGTCCCGCA
AGCGCATTGCCCTCCGCCGCCTCCAGGTCGGCGGCGGCATCTAA
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