mRNA_S-firma_F_contig10868.1158.1 (mRNA) Sphaerotrichia firma ET2_F female
|
Overview
Homology
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: A0A5D6XKD7_9STRA (Uncharacterized protein n=25 Tax=Oomycota TaxID=4762 RepID=A0A5D6XKD7_9STRA) HSP 1 Score: 215 bits (548), Expect = 2.220e-68 Identity = 104/172 (60.47%), Postives = 128/172 (74.42%), Query Frame = 3
Query: 3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKPEKPAGKPLSRKRIALRRLQVGGGI 518
AK+RG +LRVHFKHCREV+H IKGM L KAK +L VL+Y++ +PF KFTGGCGRHAQGKL +PG+ +WPQKAT+ LDL++ AEANAE + LDT KL + H AN A RRRTYRAHGRI YM +PAHIE+IL +K+D V K + +SRKR A RL+ GGG+
Sbjct: 15 AKARGSHLRVHFKHCREVSHAIKGMPLSKAKSFLSAVLDYKQAVPFTKFTGGCGRHAQGKLRNAPGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDKLYVSHAQANAAIKQRRRTYRAHGRIGPYMANPAHIELILTEKRDNVQKSDDKKEVKVSRKRQAQLRLKSGGGV 186
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: A0A6V1UCU8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UCU8_HETAK) HSP 1 Score: 214 bits (546), Expect = 4.470e-68 Identity = 105/174 (60.34%), Postives = 132/174 (75.86%), Query Frame = 3
Query: 3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKPEKPAGKPL--SRKRIALRRLQVGGGI 518
+K++G +LRVHFKH REVAH IKGM+L KAK +L+DVL++++ + F KFTGG G HAQGKL K+PGN RWPQKAT+ LDLL+ AEANAE + LD LV+ H+ N+AP RRRTYRAHGRIN YM SPAHIE++L ++ V K E+ GK L SRK+ A RR+ VGGG+
Sbjct: 14 SKAKGSHLRVHFKHMREVAHNIKGMKLAKAKAFLEDVLQFKQAVTFTKFTGGIGHHAQGKLRKAPGNKCRWPQKATKIVLDLLKNAEANAEVKGLDIESLVVTHIQTNRAPKQRRRTYRAHGRINPYMSSPAHIELLLAEEGSNVAKGEEEEGKQLKLSRKQAARRRVTVGGGV 187
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: A0A485L8A8_9STRA (Aste57867_17649 protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485L8A8_9STRA) HSP 1 Score: 214 bits (544), Expect = 8.990e-68 Identity = 105/172 (61.05%), Postives = 128/172 (74.42%), Query Frame = 3
Query: 3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKPEKPAGKPLSRKRIALRRLQVGGGI 518
AK+RG +LRVH+KHCREV H IKG L KAKK+L DVLE + +PF K+TGG GRHAQGKL+ +PG+ RWPQKATR LDL++ AEANAE + LD KL I H AN A RRRTYRAHGRI YM +PAHIE+IL +K++ V K E+P +SRKR A+ RL+ GGG+
Sbjct: 15 AKARGRHLRVHYKHCREVCHTIKGYSLAKAKKFLGDVLEMKAAVPFTKYTGGPGRHAQGKLLNAPGDKCRWPQKATRIILDLVKNAEANAELKGLDVEKLYIAHTQANMAIKQRRRTYRAHGRIGPYMANPAHIELILTEKKENVAKAEEPKAAKVSRKRQAVLRLKSGGGV 186
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: F0YFA6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFA6_AURAN) HSP 1 Score: 212 bits (539), Expect = 5.340e-67 Identity = 105/174 (60.34%), Postives = 131/174 (75.29%), Query Frame = 3
Query: 3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKPEKPAGKP---LSRKRIALRRLQVGGG 515
+K+ G +LR HFKHCREV IKGM+L KAK +L+DVL++++ + F KFTGGCGRHAQGKL K+ G+ VRWPQKAT+ LDLL+ AEANAE + LD LV+ H AN+A RRRTYRAHGRIN YM SPAHIE++L + Q+PV K E+ A KP L+RKR A R++ GGG
Sbjct: 15 SKACGSSLRAHFKHCREVCDNIKGMKLAKAKAFLEDVLQFKQAVAFTKFTGGCGRHAQGKLQKAAGDKVRWPQKATKIVLDLLKNAEANAEMKGLDVDDLVVKHSQANRAQKQRRRTYRAHGRINPYMASPAHIEIVLTKYQEPVKKGEEDAEKPVQKLTRKRQAQLRIKAGGG 188
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: A0A067CFI1_SAPPC (50S ribosomal protein L22 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CFI1_SAPPC) HSP 1 Score: 211 bits (538), Expect = 7.100e-67 Identity = 105/172 (61.05%), Postives = 127/172 (73.84%), Query Frame = 3
Query: 3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKPEKPAGKPLSRKRIALRRLQVGGGI 518
AKSRG +LRVHFKHCREV H IKG+ + KAKK+L+ VLE + +PF KFTGG GRHAQGK + +PG+ RWPQKAT+ LDL++ AEANAE + LDT KL I H AN A RRRTYRAHGRI YM +PAHIE+IL +K++ V K E A +SRKR A RL+ GGG+
Sbjct: 15 AKSRGSHLRVHFKHCREVCHTIKGLPVGKAKKFLEAVLEKKAAVPFTKFTGGVGRHAQGKTLNAPGDKCRWPQKATKIILDLVKNAEANAELKGLDTDKLYIAHTQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKKENVAKAEDAAPAKISRKRNAQLRLKSGGGV 186
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: F0WNJ9_9STRA (60S ribosomal protein L172 putative n=2 Tax=Albugo TaxID=65356 RepID=F0WNJ9_9STRA) HSP 1 Score: 211 bits (538), Expect = 7.830e-67 Identity = 103/173 (59.54%), Postives = 130/173 (75.14%), Query Frame = 3
Query: 3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPK-PEKPAGKPLSRKRIALRRLQVGGGI 518
AK+RG ++RVHFKHCREVAH IK M L KAK++L DVL+Y++ +PF KFTGGCGRHAQGKL + G+ +WPQK+T+ LDLL+ AEANAE + L SKL I HV AN+A RRRTYRAHGR+ YM PAH E++L +K+D V K PE+ +SRKR+A RL+ GGG+
Sbjct: 15 AKARGQHIRVHFKHCREVAHAIKNMNLIKAKRFLSDVLDYKQAVPFTKFTGGCGRHAQGKLRGAAGDKCKWPQKSTKVILDLLKNAEANAEMKGLTLSKLYISHVQANRAVCQRRRTYRAHGRVGPYMSHPAHFELVLTEKRDNVEKAPEEKKQVKVSRKRLAQLRLKSGGGV 187
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: A0A7S1TQM1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQM1_9STRA) HSP 1 Score: 209 bits (533), Expect = 4.080e-66 Identity = 102/172 (59.30%), Postives = 128/172 (74.42%), Query Frame = 3
Query: 3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKPEKPAGKPLSRKRIALRRLQVGGGI 518
AK+RG +LRVHFKHCREV I+GM+L KAK +L+DVLEY++ +PF KFTGG GRHAQ K +K+PG+ RWPQKA++ LDLL AEANAE + LDT L + H N+AP RRRTYRAHGRINAYM PAH+E+IL ++ D V + ++ LSRKR A RL+ GGG+
Sbjct: 15 AKARGSHLRVHFKHCREVTTTIRGMKLSKAKAFLEDVLEYKQIVPFTKFTGGVGRHAQAKNMKAPGSKGRWPQKASKIVLDLLTNAEANAEVKGLDTDALYVTHTQCNRAPPGRRRTYRAHGRINAYMSQPAHVEIILTEQDDAVARADEEKPLKLSRKRKAQLRLKQGGGV 186
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: A0A7S2WRP5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRP5_9STRA) HSP 1 Score: 207 bits (526), Expect = 7.180e-65 Identity = 102/171 (59.65%), Postives = 130/171 (76.02%), Query Frame = 3
Query: 3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKPEKPAGKPLSRKRIALRRLQVGGG 515
+K++ +LRVHFKH RE+ H IKGM+L KA K+L+DVL+Y++ +PF KFTGG GRHAQ K +K+PG+ RWPQKAT+ LDL++ AEANAE + LDT KL + H AN+A RRRTYRAHGRIN YM SPAHIE+IL +DPV K E A + L+R+R A R++VGGG
Sbjct: 30 SKAKASSLRVHFKHTREIMHTIKGMQLAKALKFLEDVLQYKQAVPFTKFTGGIGRHAQLKQMKAPGSKGRWPQKATKVVLDLVKNAEANAETKGLDTDKLFVKHAQANRAQKQRRRTYRAHGRINPYMSSPAHIELILASIEDPVAKAED-APQKLTRRRQAQLRVKVGGG 199
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: A0A7S3JYP6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYP6_9STRA) HSP 1 Score: 207 bits (526), Expect = 9.290e-65 Identity = 103/171 (60.23%), Postives = 128/171 (74.85%), Query Frame = 3
Query: 3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKPE--KPAGKPLSRKRIALRRLQVG 509
+K+ G +LR HFKHCREV + IKGM++ KAKKYL+DVL Y+R I F KFTGG GRHAQGK IK+PG+ VRWPQKAT+ LDLL AEANAE + +D LV+ H AN+AP RRRTYRAHGRIN YM SPAHIE++L + Q+PV K + + + L+RKR A R++ G
Sbjct: 37 SKACGSSLRCHFKHCREVCNCIKGMKIGKAKKYLEDVLNYKRAIKFTKFTGGVGRHAQGKSIKAPGDKVRWPQKATKIILDLLINAEANAEMKGIDVEDLVVKHAQANRAPKQRRRTYRAHGRINPYMSSPAHIEIVLTKYQEPVAKSQDAQTSLPKLTRKRQAQLRIKAG 207
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Match: A0A3R7JUX4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JUX4_9STRA) HSP 1 Score: 205 bits (522), Expect = 2.040e-64 Identity = 104/173 (60.12%), Postives = 126/173 (72.83%), Query Frame = 3
Query: 3 AKSRGDNLRVHFKHCREVAHFIKGMELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKATRHFLDLLRAAEANAEARSLDTSKLVIDHVMANKAPYMRRRTYRAHGRINAYMRSPAHIEVILVQKQDPVPKP-EKPAGKPLSRKRIALRRLQVGGGI 518
AK+RG +LRVHFKHCREV+H IKGM L KAK +LQ V EY++ +PF KFTGGCGRHAQGKL + G+ +WPQKAT+ LDLL+ AEANAE + LDT L + H AN A RRRTYRAHGRI YM +PAHIE+IL +K+ V K E+ +SRKR A RL+ GGG+
Sbjct: 15 AKARGSHLRVHFKHCREVSHAIKGMPLNKAKSFLQAVTEYKQAVPFTKFTGGCGRHAQGKLRGAAGDKCKWPQKATKIILDLLKNAEANAEVKGLDTDLLYVSHAQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKRANVAKAVEEVKTAKVSRKRQAQLRLKSGGGV 187 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10868.1158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10868.1158.1 >prot_S-firma_F_contig10868.1158.1 ID=prot_S-firma_F_contig10868.1158.1|Name=mRNA_S-firma_F_contig10868.1158.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=149bp MELQKAKKYLQDVLEYRRGIPFVKFTGGCGRHAQGKLIKSPGNSVRWPQKback to top mRNA from alignment at S-firma_F_contig10868:3701..4334- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10868.1158.1 ID=mRNA_S-firma_F_contig10868.1158.1|Name=mRNA_S-firma_F_contig10868.1158.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=634bp|location=Sequence derived from alignment at S-firma_F_contig10868:3701..4334- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10868:3701..4334- >mRNA_S-firma_F_contig10868.1158.1 ID=mRNA_S-firma_F_contig10868.1158.1|Name=mRNA_S-firma_F_contig10868.1158.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=894bp|location=Sequence derived from alignment at S-firma_F_contig10868:3701..4334- (Sphaerotrichia firma ET2_F female)back to top |