mRNA_S-firma_F_contig10865.1154.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10865.1154.1
Unique NamemRNA_S-firma_F_contig10865.1154.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10865.1154.1 vs. uniprot
Match: D7G209_ECTSI (B box-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G209_ECTSI)

HSP 1 Score: 356 bits (914), Expect = 1.570e-116
Identity = 188/222 (84.68%), Postives = 200/222 (90.09%), Query Frame = 1
Query:    7 VDVYTGRWGGSKARTIKDELRFALAALSGMMVAGDRNWGQKNADLLDTLEENQDAFAEIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGRV--DLVNDIKMVYDLVEDRGGLEMLHDERLVAATADISGISMTKAEVDDQVAAKNKARAELLKEYVSDSFSRGEVERVLDSIADANNYIAFNVAPVERTIDLLTKNFHPDKPEAEWSLKLSAGSSGRKR 666
            VDVY+GRW  SKARTI +ELR  LAALSGMMVAG+ NWGQKNA LLD+L++NQDAFAEIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGRV  +LV DI+MVYDLVEDRGGLEML DER+VAATADISGISM+KAEV  QVAAKNKARA LLK+YVSDSF + EVERVLDSIADANNYIAFNVAPVERTI LL  NFHPDKPE EWSLKLSA S GRKR
Sbjct:  234 VDVYSGRWS-SKARTINEELRMTLAALSGMMVAGELNWGQKNAALLDSLDDNQDAFAEIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGRVGLELVKDIQMVYDLVEDRGGLEMLQDERVVAATADISGISMSKAEVSFQVAAKNKARAGLLKDYVSDSFPKEEVERVLDSIADANNYIAFNVAPVERTISLLQDNFHPDKPEGEWSLKLSA-SGGRKR 453          
BLAST of mRNA_S-firma_F_contig10865.1154.1 vs. uniprot
Match: A0A6H5LC65_9PHAE (B box-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC65_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 2.820e-115
Identity = 186/223 (83.41%), Postives = 199/223 (89.24%), Query Frame = 1
Query:    4 RVDVYTGRWGGSKARTIKDELRFALAALSGMMVAGDRNWGQKNADLLDTLEENQDAFAEIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGRV--DLVNDIKMVYDLVEDRGGLEMLHDERLVAATADISGISMTKAEVDDQVAAKNKARAELLKEYVSDSFSRGEVERVLDSIADANNYIAFNVAPVERTIDLLTKNFHPDKPEAEWSLKLSAGSSGRKR 666
            RVDVY+ RW   KARTI +ELR  LAALSGMMVAG+RNWGQKNA LLD+L++NQDAFA+IFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGRV  +LV DI+MVYDLVEDRGGLEML DER+V ATADISGISM+KAEV  QVAAKNKARA LLK+YVSDSF + EVERVLDSIADANNYIAFNVAPVERTI LL  NFHPDKPE EWSLKLSA S GRKR
Sbjct:  238 RVDVYSSRWS-FKARTINEELRMTLAALSGMMVAGERNWGQKNAALLDSLDDNQDAFADIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGRVGLELVKDIQMVYDLVEDRGGLEMLQDERVVVATADISGISMSKAEVSFQVAAKNKARAGLLKDYVSDSFPKEEVERVLDSIADANNYIAFNVAPVERTISLLQDNFHPDKPEGEWSLKLSA-SGGRKR 458          
BLAST of mRNA_S-firma_F_contig10865.1154.1 vs. uniprot
Match: A0A2Z6QK00_9GLOM (B box-type domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QK00_9GLOM)

HSP 1 Score: 144 bits (362), Expect = 5.840e-36
Identity = 82/225 (36.44%), Postives = 138/225 (61.33%), Query Frame = 1
Query:    4 RVDVYTGRWGGSKARTIKDELRFALAALSGMMVAGDRNWGQKNADLLD--TLEENQDAFAEIFEVGRRYKITNPEKFRDFYGKMMYMLQDA-----QAQGRVDLVNDIKMVYDLVEDRGGLEMLHDERLVAATADISGISMTKAEVDDQVAAKNKARAELLKEYVSDSFSRGEVERVLDSIADANNYIAFNVAPVERTIDLLTKNFHPDKPEAEWSLKLSAGSSG 657
            ++D+ +  +  SK R +  +++   + LSG+MVA D   GQ   +L++  + E+NQ+ F +IFE+GRR+KI NPEK RD YGK+MYML D+     Q     +L+  IK VY  +++RGGL +LH + +V AT +I     ++ +++ ++ AK +A   L +++ SD  ++ E+++ L SI D + Y+  N    ER +  L K F+P+K E  +SL +S+G +G
Sbjct:  315 KIDIIS--YSSSKTRRMVHQIKDLCSILSGLMVASDYKKGQ---ELINNRSFEDNQEFFQKIFEIGRRHKIMNPEKMRDAYGKLMYMLMDSVIPDVQDMLSFNLIIPIKTVYSFLKERGGLAVLHHDYIVDATKEIIPDGKSRPQINKEIRAKERAIENLSRKFASDKLTQEEIKQCLYSIGDNHAYLRGNRDCCERMVQYLQKYFNPNKIEKGYSLAISSGRNG 534          
BLAST of mRNA_S-firma_F_contig10865.1154.1 vs. uniprot
Match: A0A8H3R479_9GLOM (Glucose-inhibited division protein A subfamily n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3R479_9GLOM)

HSP 1 Score: 144 bits (362), Expect = 8.010e-36
Identity = 82/225 (36.44%), Postives = 138/225 (61.33%), Query Frame = 1
Query:    4 RVDVYTGRWGGSKARTIKDELRFALAALSGMMVAGDRNWGQKNADLLD--TLEENQDAFAEIFEVGRRYKITNPEKFRDFYGKMMYMLQDA-----QAQGRVDLVNDIKMVYDLVEDRGGLEMLHDERLVAATADISGISMTKAEVDDQVAAKNKARAELLKEYVSDSFSRGEVERVLDSIADANNYIAFNVAPVERTIDLLTKNFHPDKPEAEWSLKLSAGSSG 657
            ++D+ +  +  SK R +  +++   + LSG+MVA D   GQ   +L++  + E+NQ+ F +IFE+GRR+KI NPEK RD YGK+MYML D+     Q     +L+  IK VY  +++RGGL +LH + +V AT +I     ++ +++ ++ AK +A   L +++ SD  ++ E+++ L SI D + Y+  N    ER +  L K F+P+K E  +SL +S+G +G
Sbjct:  314 KIDIIS--YSSSKTRRMVHQIKDLCSILSGLMVASDYKKGQ---ELINNRSFEDNQEFFQKIFEIGRRHKIMNPEKMRDAYGKLMYMLMDSVIPDVQDMLSFNLIIPIKTVYSFLKERGGLAVLHHDYIVDATKEIIPDGKSRPQINKEIRAKERAIENLSRKFASDKLTQEEIKQCLYSIGDNHAYLRGNRDCCERMVQYLQKYFNPNKIEKGYSLAISSGRNG 533          
BLAST of mRNA_S-firma_F_contig10865.1154.1 vs. uniprot
Match: A0A836CCT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCT5_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.970e-35
Identity = 91/221 (41.18%), Postives = 129/221 (58.37%), Query Frame = 1
Query:    4 RVDVYTGRWGGSKARTIKDELRFALAALSGMMVAGDRNWGQKNADLLDT-LEENQDAFAEIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGR------VDLVNDIKMVYDLVEDRGGLEMLHDERLVAATADISGISMTKAEVDDQVAAKNKARAELLKEYVSDSFSRGEVERVLDSIADANNYIAFNVAPVERTIDLLTKNFHPDKPEAEWSLKLSA 645
            RVDV+T R   SK   I++E    L  +SG+ +AG    G++     DT L +N   FA  FEVGRRYKI+NP K R  YGKMM++LQDA A           LV+ ++MV   +E RG   +L D R++AATA+++   + +  +   + AK +ARA L++ + S + S  +VER LDSIADAN+Y+  NV PV   +  L  +F   K E  +SL+L A
Sbjct:  103 RVDVFTRR---SKRAVIEEEQSAMLTTMSGLAIAGHVCGGERLVG--DTPLADNAAFFARAFEVGRRYKISNPAKLRATYGKMMFLLQDAVALSTNLKSRPPALVSQLQMVTPFLEARGAAALLSDARVLAATAEVTERKVGRGGLAAALRAKGEARAALVRAHASPTLSAADVERALDSIADANSYLEANVQPVAAALRCLRAHFTRSKAEDPYSLRLVA 318          
BLAST of mRNA_S-firma_F_contig10865.1154.1 vs. uniprot
Match: A0A8K1CHU6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHU6_PYTOL)

HSP 1 Score: 141 bits (355), Expect = 5.700e-35
Identity = 89/225 (39.56%), Postives = 129/225 (57.33%), Query Frame = 1
Query:    4 RVDVYTGRWGGSKARTIKDELRFALAALSGMMVAGDRNWGQKNADLLDTLEENQDAFAEIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQG-----RVDLVNDIKMVYDLVEDRGGLEMLHDERLVAATADISGISMT--KAEVDDQVAAKNKARAELLKEYVSDSFSRGEVERVLDSIADANNYIAFNVAPVERTIDLLTKNFHPDKPEAEWSLKLSAGSSG 657
            +VDV + R   S  + +  EL+  L+ +SGMMVA D   G K   L +  E+N   F E+FE+GRRYKI NPE+ R+ YGKM+YMLQDA  +          V  I+ V   ++ R  L++L D R V ATA  S  S+   +A+ +D +  K +A  EL+++Y S S S  ++  VL SI D+ +Y+  N  P+ R I  L K F PD+ E  +SL++ AG +G
Sbjct:  171 KVDVLSYR---SPVKRVIQELKEVLSTVSGMMVATDFRKG-KRLVLNNKFEDNDTFFREVFEIGRRYKIMNPERMRNNYGKMIYMLQDASMREIKNYLGFSCVGPIQTVKSFLKKRHALDLLKDRRCVTATAVFSSTSLEDDEAKPEDFLQEKQRAIDELVRDYASSSLSANDIRLVLASIDDSQSYLVSNRTPIIRMIKYLNKFFQPDRIEPNFSLEIRAGRNG 391          
BLAST of mRNA_S-firma_F_contig10865.1154.1 vs. uniprot
Match: L1IZP0_GUITC (B box-type domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IZP0_GUITC)

HSP 1 Score: 139 bits (351), Expect = 7.710e-35
Identity = 83/225 (36.89%), Postives = 132/225 (58.67%), Query Frame = 1
Query:    4 RVDVYTGRWG--GSKARTIKDELRFALAALSGMMVAGDRNWGQ---KNADLLDTLEENQDAFAEIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGRVDLVNDIKMVYDLVEDRGGLEMLHDE----RLVAATADISGISMTKAEVDDQVAAKNKARAELLKEYVSDSFSRGEVERVLDSIADANNYIAFNVAPVERTIDLLTKNFHPDKPEAEWSLKLSAGS 651
            +VDV  G W    +KA  I++E+   L  L G++VAG+   G    KN  +     +N++ F  + E+GRR+KITNPEK R  YGK++Y++QDA +   +D+  DI  VY+ +E R  LE+L DE     ++A ++   G+  ++AE++   + K KA   + + Y +D  S+ E+E  L S+ D + Y+  N  PV+  I LLT NF P+K E  +SL++ +GS
Sbjct:  152 KVDVVRG-WSFRNTKADVIREEIADLLQLLLGLIVAGNPTKGSEIVKNKQI----SQNEEFFQRVLEIGRRFKITNPEKMRCTYGKLIYLMQDAPSAIDLDVAADIHTVYNFLEARDALEVLADEDIGTAIMAVSSSEGGVQRSRAELEADSSNKQKAIRSISERYANDKISKEEIEYCLFSMGDFHAYLETNRRPVDEMIALLTANFDPNKAENPYSLEICSGS 371          
BLAST of mRNA_S-firma_F_contig10865.1154.1 vs. uniprot
Match: A0A1X2GPB4_9FUNG (B box-type domain-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GPB4_9FUNG)

HSP 1 Score: 139 bits (349), Expect = 1.170e-34
Identity = 83/226 (36.73%), Postives = 130/226 (57.52%), Query Frame = 1
Query:    4 RVDVYTGRWGGSKARTIKDELRFALAALSGMMVAGDRNWGQKNADLLDTLEENQDAFAEIFEVGRRYKITNPEKFRDFYGKMMYMLQDA------QAQGRVDLVNDIKMVYDLVEDRGGLEMLHDERLVAATADISGISMTKAEVDDQVAAKNKARAELLKEYVSDSFSRGEVERVLDSIADANNYIAFNVAPVERTIDLLTKNFHPDKPEAEWSLKLSAGSSGRK 663
            RVD+ +     +KA+ I  +++     LSG++V GD   G +     ++  +N+  F ++FEVGRRYKI NPEK R  YGK+MYML D+      QA G    V  IK VY  +++R GLE+LHD+ +  AT +IS    ++ +V  ++  K  +   L K Y +D  +  ++ER L S++D ++Y+  N  P ++ I  LTK FHP+  E  +SL ++AG  G +
Sbjct:  139 RVDILSY---SNKAKRIVHQIKDVCYILSGLLVTGDYKLGAR-LFAENSTRDNEAFFQQVFEVGRRYKIMNPEKLRSNYGKLMYMLMDSVIPEVEQALG-FQCVVPIKTVYSFLKERQGLELLHDDHIALATREISPEFKSRDQVQAEIQRKRLSIDTLCKTYATDQLTVEDIERCLASLSDNHSYLKANRDPCDKMIKYLTKYFHPNTIETGYSLAITAGRHGHR 359          
BLAST of mRNA_S-firma_F_contig10865.1154.1 vs. uniprot
Match: A0A2I1GDN2_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2I1GDN2_9GLOM)

HSP 1 Score: 136 bits (342), Expect = 3.480e-34
Identity = 78/223 (34.98%), Postives = 131/223 (58.74%), Query Frame = 1
Query:    4 RVDVYTGRWGGSKARTIKDELRFALAALSGMMVAGDRNWGQKNADLLDTLEENQDAFAEIFEVGRRYKITNPEKFRDFYGKMMYMLQDA-----QAQGRVDLVNDIKMVYDLVEDRGGLEMLHDERLVAATADISGISMTKAEVDDQVAAKNKARAELLKEYVSDSFSRGEVERVLDSIADANNYIAFNVAPVERTIDLLTKNFHPDKPEAEWSLKLSAGSSG 657
            ++D+ +  +  SK R +  +++   + LSG+MVA D   GQ+   +  + E+NQ+ F  IFE+GRR+KI NPEK RD YGK+MYML D+     Q      LV  IK VY  +++R GL +LH + +  AT +I     ++ +++ ++ +K +A   L +++ +D+ ++ E++  L SI D + Y+  N    ER    L K F+P+K E  +SL +S+G +G
Sbjct:   22 KIDIIS--YNSSKTRRMVHQIKDLCSILSGLMVASDYKKGQELI-INKSFEDNQEFFQRIFEIGRRHKIMNPEKMRDAYGKLMYMLMDSVIPDVQDMLSFSLVIPIKTVYSFLKERDGLGLLHHDLMAEATKEIIADGKSRPQINQEIRSKERAIEWLSRKFANDNLTQEEIKHCLYSIGDNHAYLRANRDCCERISQYLQKYFNPNKIEKGYSLAISSGRNG 241          
BLAST of mRNA_S-firma_F_contig10865.1154.1 vs. uniprot
Match: A0A168LTG9_ABSGL (B box-type domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168LTG9_ABSGL)

HSP 1 Score: 138 bits (347), Expect = 3.910e-34
Identity = 80/226 (35.40%), Postives = 129/226 (57.08%), Query Frame = 1
Query:    4 RVDVYTGRWGGSKARTIKDELRFALAALSGMMVAGDRNWGQKNADLLDTLEENQDAFAEIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGRVDL------VNDIKMVYDLVEDRGGLEMLHDERLVAATADISGISMTKAEVDDQVAAKNKARAELLKEYVSDSFSRGEVERVLDSIADANNYIAFNVAPVERTIDLLTKNFHPDKPEAEWSLKLSAGSSGRK 663
            R+D+ +     +KA+ I  +++     +SG++V+GD   G +      +++EN+  F  +FEVGRRYKI NPEK R  YGK+MYML D+     V+L      V  IK VYD +++ G +E+LHD+ +  AT +IS    T+ +V +++  K  A   L  +Y +D  S  ++ER L S++D + ++  N  P ER +  L K + P K E+ +SL + AG  G +
Sbjct:  168 RIDILSY---SNKAKRIVGQIKDICDVISGLLVSGDYKLGAR-LFAEQSIKENEVFFQRVFEVGRRYKIMNPEKMRSNYGKLMYMLMDSVIP-EVELALGFNCVIPIKTVYDFLKEHGAMELLHDDNIALATREISPEFKTQEQVQEEIQRKKAAIHTLCDQYSTDRISAQDIERCLSSLSDNHAFLKSNRDPCERMLKYLAKYYQPGKSESNYSLAIMAGRHGHR 388          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10865.1154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G209_ECTSI1.570e-11684.68B box-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5LC65_9PHAE2.820e-11583.41B box-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A2Z6QK00_9GLOM5.840e-3636.44B box-type domain-containing protein n=1 Tax=Rhizo... [more]
A0A8H3R479_9GLOM8.010e-3636.44Glucose-inhibited division protein A subfamily n=1... [more]
A0A836CCT5_9STRA1.970e-3541.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8K1CHU6_PYTOL5.700e-3539.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
L1IZP0_GUITC7.710e-3536.89B box-type domain-containing protein n=2 Tax=Guill... [more]
A0A1X2GPB4_9FUNG1.170e-3436.73B box-type domain-containing protein n=1 Tax=Hesse... [more]
A0A2I1GDN2_9GLOM3.480e-3434.98Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A168LTG9_ABSGL3.910e-3435.40B box-type domain-containing protein n=1 Tax=Absid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10865contigS-firma_F_contig10865:444..4168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog55529.EKX41270
PFAMsDUF2009
Max annot lvl2759|Eukaryota
Evalue1.26e-35
EggNOG OGs28J77@1|root,2QRJJ@2759|Eukaryota
DescriptionProtein of unknown function (DUF2009)
COG categoryS
Hectar predicted targeting categoryother localisation
Exons6
Model size669
Cds size669
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10865.1154.1prot_S-firma_F_contig10865.1154.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10865 444..4168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815630.2824059-CDS-S-firma_F_contig10865:443..5491622815630.2824059-CDS-S-firma_F_contig10865:443..549Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10865 444..549 +
1696949465.7511327-CDS-S-firma_F_contig10865:443..5491696949465.7511327-CDS-S-firma_F_contig10865:443..549Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10865 444..549 +
1622815630.293597-CDS-S-firma_F_contig10865:1049..11321622815630.293597-CDS-S-firma_F_contig10865:1049..1132Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10865 1050..1132 +
1696949465.7617717-CDS-S-firma_F_contig10865:1049..11321696949465.7617717-CDS-S-firma_F_contig10865:1049..1132Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10865 1050..1132 +
1622815630.3075128-CDS-S-firma_F_contig10865:1715..18351622815630.3075128-CDS-S-firma_F_contig10865:1715..1835Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10865 1716..1835 +
1696949465.771517-CDS-S-firma_F_contig10865:1715..18351696949465.771517-CDS-S-firma_F_contig10865:1715..1835Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10865 1716..1835 +
1622815630.319138-CDS-S-firma_F_contig10865:2134..22421622815630.319138-CDS-S-firma_F_contig10865:2134..2242Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10865 2135..2242 +
1696949465.78213-CDS-S-firma_F_contig10865:2134..22421696949465.78213-CDS-S-firma_F_contig10865:2134..2242Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10865 2135..2242 +
1622815630.3289177-CDS-S-firma_F_contig10865:3182..33371622815630.3289177-CDS-S-firma_F_contig10865:3182..3337Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10865 3183..3337 +
1696949465.793594-CDS-S-firma_F_contig10865:3182..33371696949465.793594-CDS-S-firma_F_contig10865:3182..3337Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10865 3183..3337 +
1622815630.3387961-CDS-S-firma_F_contig10865:4071..41681622815630.3387961-CDS-S-firma_F_contig10865:4071..4168Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10865 4072..4168 +
1696949465.8051605-CDS-S-firma_F_contig10865:4071..41681696949465.8051605-CDS-S-firma_F_contig10865:4071..4168Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10865 4072..4168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10865.1154.1

>prot_S-firma_F_contig10865.1154.1 ID=prot_S-firma_F_contig10865.1154.1|Name=mRNA_S-firma_F_contig10865.1154.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=223bp
RRVDVYTGRWGGSKARTIKDELRFALAALSGMMVAGDRNWGQKNADLLDT
LEENQDAFAEIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGRVDLVN
DIKMVYDLVEDRGGLEMLHDERLVAATADISGISMTKAEVDDQVAAKNKA
RAELLKEYVSDSFSRGEVERVLDSIADANNYIAFNVAPVERTIDLLTKNF
HPDKPEAEWSLKLSAGSSGRKR*
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mRNA from alignment at S-firma_F_contig10865:444..4168+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10865.1154.1 ID=mRNA_S-firma_F_contig10865.1154.1|Name=mRNA_S-firma_F_contig10865.1154.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3725bp|location=Sequence derived from alignment at S-firma_F_contig10865:444..4168+ (Sphaerotrichia firma ET2_F female)
CGCAGGGTGGACGTGTACACCGGGCGCTGGGGGGGCTCGAAGGCCAGGAC CATCAAAGACGAGCTGCGGTTCGCTTTGGCCGCGCTCTCCGGCATGATGG TCGCGGGTGCGTGCGTGTGTGTGTGTGTGTGTGCCCAGTATCATAGGTGT TTCTGTTTGTTTGTTTGTTTGTTTGTTTGTTTCTCACATTAGCTCTGCCG TGCATATGTGGTGCTGCTATTTATGCCATATCGTAGTGATGTAAGGCGTG GGGTAGACTGTGTGTGTGTGTGTGTGTGTGTGTGCCCAGTATCATAGGTG GTGCAGCCATGCCATACCGTGGTGACGTAAGGCGTGGGGTAGACTGCTGT TTTTGGGCGTTTTTTTTTTTGGTTGGTGCGTCTTTTGGCACAGCAGTGTT TTCAAGACCCTGGGCTGCCGTTTGACGCTCCCACAAAAAAAGGGTTGAAG TATACTGTATAGAAAGTAGCCATTTACTTGGCGACCTCGACAGCCTGTTC TGCGAACCCTTTCTACATCCAGTGTGTGGAGTGAAGATGCGTACCCCCCG CGAGAATGAATGCGGCTTGACACACCTGATGCGACGATTGATTCGGTCAT GTGCAGGCGATCGAAATTGGGGGCAGAAGAACGCCGATCTCCTCGACACG CTGGAGGAGAACCAAGACGCCTTCGCCGAGATTTTCGAGGTGTGCGTGGC TGATATGTAGGCGTGTTTTCTTTGTCTTTTGTCTTGGCTGGATGGCACTG GTGCCCCGAAGCAACTGAAGTAAGAGGGGAACGCACGTGTCCAAAGCGAA ACTCGCTCAAACAGCAGCAGTACGTAGTTCGCATGTTCAGCATGTTATCA AGCGTGTTTTTGATCGTTGACGATTTGATTGCAAGGCACCGCAGAACTTA GAGGATGTTTGGTTTGCCGGTGCACCAAGCGTACAGATGGTCGGTTCACA GTCCACAGCTCGACAGCTTCAGCGGATGGTCACCGCCGTTGTTGCTTCGG ATTCGAAACACACGCATTTGTCTCGAGGTTCGATGTTTTTTTTGTAAACC TTCCTCTCGCTCTGGTCGTGCTTCGTCTCGTCGCCCGGAGTATCATACAT ACGAGCAACGAGAACCGCCGCCGCATCGTTGCTTCTTTTGCGAAGACCAA ACGACGACTGTTTAAGCGCGTCTCGCACCACACACCGCCTGATGCACATG GCCGCGCGAACCGACTCCTCACCCTCCGTGTGCTCTTTTTCCCGCGTCCC CGGTCCCGCCGCCCGCCTGCAGGTTGGCCGTCGCTACAAGATCACCAACC CCGAAAAGTTTCGCGACTTTTACGGGAAGATGATGTACATGCTCCAGGAT GCGCAAGCGCAGGGACGGGTAGACCTCGTGAACGACATCAAGGTGGGGGT TAGTCGTAGGATACCCCCTGGTAGGGGCGAGGGTGGAGAGTTGGGGGCTG GGTGGGACAGGGCACGCGGGTGCCTCCTTCCATGCCCCCCGTGCCGCAAT CATTTTTTGGCATCCCAGGTTACCTCGTCACCCGGTGGGCAAACCGAGTA TTTGTTTGCTGTCGATGTTTTTTTTTTTTATTATTTTTTTTTTATGTTTT TTTTTTTATCCATCCCCCCCCGCGTTTCGTCTTTCGTGCCGCTGCAATGG CACGCTTTTGCGCCTCACGTCTTCCTCGTCGGTGTGTTTAGATGGTGTAC GACTTGGTGGAGGATAGAGGAGGGCTAGAGATGCTGCACGACGAGCGGCT GGTGGCGGCGACGGCGGATATATCGGGCATCTCCATGACGAAGGCGGAGG TGCGTCATGCAGGGTAAAATTTGAAGTTTTAAAATTCTAGGAGCGAGACG GAAAGATTTTTTTTTTTCTCCTCCCATTGGTGTTTCTGTCGTATGCCCCA CTGGCCCCCATCCTCCACTACGAACATGTTGTTGTGTGAATAGATGAATG GGTGCTTCGTTTGTTCTGACCGGCGTCCGAAAGCCGTCCCAATCCCCCAC TACGAGGAGTAACCGCATCCCCCCGACTACCATAGACCGAACTACGGAAG ACCTACAAAACTCCATAGAGGAATGTCGCGTTGATCCGGTTGAACCCGTG CACGGGTCCGGCAACAGTCCCGGCTTGACCGCGGCAAACGAAACCATGTG ATATTTCTAACCTTGGGGCGTTTTTTCTATCCGGCCGGACCCATGTTACA CGCTGCGGTGATGGATGATGCATGGATGATGCATACATCACTGCAGTGAT ATTACAAGTACATAACTGCAGTGCTGGGAATACCGCTTTCAGCCCACGGA ATCCCCGTCTCTAATGTGGGAAGCCTCCGTCTTTGATTTTGAAAAATCAC ACGGGAAATCTCAGAAAGAACTCCACTGCAGGACCGAGGTCTGATGCGGT GGTTTAACCGCTGTTCAATGCAAAGATTTATTTTTTTATGTATTTCCTTT TACGTAGAGCCATGATGGTGTGTGATCTGTTTTTATGGGAAGGTTCAGGT TTTTCCGAGAAAACCTCAACTGTTCATAGCGTACAATAAATACCACGCCG GCACGAGGCAGCACGCTTGGCAGCACGCTTGCTGCTGCTGCGGCTGTGAT TGTGATTGGATGCGCCGTGTGCTCCTCTGGACGCAGACTGGCGTCTAAAC CCCCCCCTTTTCCCCGTCTCTTGGTCGCCTCTCCCTCTTCTTGTCGGGGG TGCGTTTTCCGTCTGCCGGCGGCGGCGTTTTTTCGCCAGGTGGATGACCA GGTAGCGGCGAAGAACAAGGCTCGCGCGGAGCTGCTGAAGGAGTACGTGT CGGATTCCTTCTCCAGGGGGGAGGTGGAGCGAGTACTGGACTCCATCGCG GACGCGAACAACTACATCGCCTTCAACGTGGCTCCCGTGGAGAGGTACGG CAAGGGAGACGGGGTGGGTAGGTAGATCAGGAGAGGGGGTGGATACGGAT AGGTCAGGAGACAGGGTAGGTGGATAGACCAGGAGATAGCGATAGGAAGG ATGCTTGTGAGGCCCCATCTTAACGGGACGCAAAAAATCGGTCCAAAGTA TCTGTTTCGGGCTGTGATTGGTCAACTCCCGAAAACACCGCCTTCCGTGA GGTTTCCAACTCTTCAAATATTGACACCTGGAAACAGAAAAAATGTGATT CGAAAGAATAAAAAAACACTTCTTTGGGACGACAGTTTTTCTGTCGAAGA ACGCCTTTTTCTTTTGGCGAGGAGCCTTTTAATTTTTTTTTTTGCCGACA GATATTTTTGCAACCCAATAAGACACGGCCTCAAGGGAGACAGAGCGCTA AAATCGTGGTTGGCGCAGAATGAATGGTAAACCTTTAAAGCGTGGGTGCC CCGTCCAACTTGTCCAACGGAAGAAGCCTAAATACAGACCTACCTGGTGC TGCTTTCCGGACAGAGCCGACAGAACCGACAGCGCTGTTCCGTTCTCCCT GCAGACTCGCCTGTCTTCTGCCCTCCTTCGTTGTGTGTGTGTGTGTGTGT GTGTGTTTTGTTTTTTTCTCGTTGCTGCTCCGCTGGGCGTTGGTCGCCGT TGTCGTAATTGTTGCGATGTTGTTGCCGCTTCTTGTTGTTGCTGTTGCCG TTGCTGTTGCCGTCGCTGCCGCCGACAGAACCATCGATCTCCTGACGAAA AACTTCCACCCCGACAAGCCGGAAGCGGAATGGAGCTTGAAGCTTAGCGC CGGCAGCAGCGGGAGAAAACGGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10865:444..4168+

>mRNA_S-firma_F_contig10865.1154.1 ID=mRNA_S-firma_F_contig10865.1154.1|Name=mRNA_S-firma_F_contig10865.1154.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1338bp|location=Sequence derived from alignment at S-firma_F_contig10865:444..4168+ (Sphaerotrichia firma ET2_F female)
CGCAGGGTGGACGTGTACACCGGGCGCTGGGGGGGCTCGAAGGCCAGGAC
CATCAAAGACGAGCTGCGGTTCGCTTTGGCCGCGCTCTCCGGCATGATGG
TCGCGGCGCAGGGTGGACGTGTACACCGGGCGCTGGGGGGGCTCGAAGGC
CAGGACCATCAAAGACGAGCTGCGGTTCGCTTTGGCCGCGCTCTCCGGCA
TGATGGTCGCGGGCGATCGAAATTGGGGGCAGAAGAACGCCGATCTCCTC
GACACGCTGGAGGAGAACCAAGACGCCTTCGCCGAGATTTTCGAGGCGAT
CGAAATTGGGGGCAGAAGAACGCCGATCTCCTCGACACGCTGGAGGAGAA
CCAAGACGCCTTCGCCGAGATTTTCGAGGTTGGCCGTCGCTACAAGATCA
CCAACCCCGAAAAGTTTCGCGACTTTTACGGGAAGATGATGTACATGCTC
CAGGATGCGCAAGCGCAGGGACGGGTAGACCTCGTGAACGACATCAAGGT
TGGCCGTCGCTACAAGATCACCAACCCCGAAAAGTTTCGCGACTTTTACG
GGAAGATGATGTACATGCTCCAGGATGCGCAAGCGCAGGGACGGGTAGAC
CTCGTGAACGACATCAAGATGGTGTACGACTTGGTGGAGGATAGAGGAGG
GCTAGAGATGCTGCACGACGAGCGGCTGGTGGCGGCGACGGCGGATATAT
CGGGCATCTCCATGACGAAGGCGGAGATGGTGTACGACTTGGTGGAGGAT
AGAGGAGGGCTAGAGATGCTGCACGACGAGCGGCTGGTGGCGGCGACGGC
GGATATATCGGGCATCTCCATGACGAAGGCGGAGGTGGATGACCAGGTAG
CGGCGAAGAACAAGGCTCGCGCGGAGCTGCTGAAGGAGTACGTGTCGGAT
TCCTTCTCCAGGGGGGAGGTGGAGCGAGTACTGGACTCCATCGCGGACGC
GAACAACTACATCGCCTTCAACGTGGCTCCCGTGGAGAGGTGGATGACCA
GGTAGCGGCGAAGAACAAGGCTCGCGCGGAGCTGCTGAAGGAGTACGTGT
CGGATTCCTTCTCCAGGGGGGAGGTGGAGCGAGTACTGGACTCCATCGCG
GACGCGAACAACTACATCGCCTTCAACGTGGCTCCCGTGGAGAGAACCAT
CGATCTCCTGACGAAAAACTTCCACCCCGACAAGCCGGAAGCGGAATGGA
GCTTGAAGCTTAGCGCCGGCAGCAGCGGGAGAAAACGGTAGAACCATCGA
TCTCCTGACGAAAAACTTCCACCCCGACAAGCCGGAAGCGGAATGGAGCT
TGAAGCTTAGCGCCGGCAGCAGCGGGAGAAAACGGTAG
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