mRNA_S-firma_F_contig10862.1152.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10862.1152.1
Unique NamemRNA_S-firma_F_contig10862.1152.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10862.1152.1 vs. uniprot
Match: A0A7S1CCF0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCF0_9STRA)

HSP 1 Score: 415 bits (1067), Expect = 3.570e-142
Identity = 200/260 (76.92%), Postives = 228/260 (87.69%), Query Frame = 1
Query:   22 RFASYCLTEPNSGSDAASLSTKAVRDGDHYVVNGSKAFISGGSRSDAYIIMVRTGGPGPSGVSCLVVENGTPGLSFGAQERKLGWNTQPTAAVILEDCRVPVANRLGEEGDGFTIAMKGLDGGRISIGTCSVGAASTCFSLARDHVLVRKQFGAPLAHNQHVAFKVNDMATDLVTARMLIRQAAAMLDDKHPNARAFCAMAKRVATDSGFNICNDALQLHGGYGYLKDYPVERFLRDVRVHQILEGTNEIMRHIVSRQLL 801
            +F+SYCLTEPN+GSDA+ L+TKAVRDGD YV+NGSKAFISGG RSD Y+IM RTGG GP+GVSC +VENGT GLSFGAQERKLGWNTQPTA VILED RVP +N +G EG+GF IAM+GLDGGR+SIGTCSVGAAS CF  AR+HV VR+QFG PL+ NQH+ FK+ DMATDL T+RM++RQ A +LD KH NARAFCAMAKRVATD  F +CNDALQLHGGYGYL DYP+ER+LRDVRVHQILEGTNEIMR I+SR+LL
Sbjct:  179 KFSSYCLTEPNAGSDASGLATKAVRDGDDYVLNGSKAFISGGGRSDVYLIMARTGGDGPAGVSCFLVENGTKGLSFGAQERKLGWNTQPTAMVILEDVRVPASNLIGGEGNGFKIAMRGLDGGRLSIGTCSVGAASACFHHAREHVTVRQQFGKPLSANQHIQFKLADMATDLQTSRMMVRQGARLLDAKHDNARAFCAMAKRVATDLCFGVCNDALQLHGGYGYLMDYPIERYLRDVRVHQILEGTNEIMRLILSRELL 438          
BLAST of mRNA_S-firma_F_contig10862.1152.1 vs. uniprot
Match: A0A812Z3I9_9DINO (Acad8 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Z3I9_9DINO)

HSP 1 Score: 410 bits (1053), Expect = 2.650e-141
Identity = 197/262 (75.19%), Postives = 229/262 (87.40%), Query Frame = 1
Query:   19 QRFASYCLTEPNSGSDAASLSTKAVRDGDHYVVNGSKAFISGGSRSDAYIIMVRTGGPGPSGVSCLVVENGTPGLSFGAQERKLGWNTQPTAAVILEDCRVPVANRLGEEGDGFTIAMKGLDGGRISIGTCSVGAASTCFSLARDHVLVRKQFGAPLAHNQHVAFKVNDMATDLVTARMLIRQAAAMLDDKHPNARAFCAMAKRVATDSGFNICNDALQLHGGYGYLKDYPVERFLRDVRVHQILEGTNEIMRHIVSRQLLA 804
            ++F+SYCLTEP SGSDAASLST+AVRDGD YV+NG K FISGG RSD Y+IM RTGG GPSG+SC++V +   GLSFGAQE+KLGWNTQPTAAV LED RVPVANRLGEEGDGF IAMKGLDGGR+SIGTCS+GAA+ CF +AR++V  RKQFG PL +NQ +AF+++DMATDL  +R++IRQ A +LD K PNARAF AMAK+V+TD GF ICN+ALQLHGGYGYLKDYP+ER+LRDVRVHQILEGTNEIMR I+SRQL A
Sbjct:   94 EKFSSYCLTEPGSGSDAASLSTRAVRDGDDYVLNGQKMFISGGGRSDVYVIMARTGGEGPSGISCILVPSDAKGLSFGAQEKKLGWNTQPTAAVFLEDVRVPVANRLGEEGDGFKIAMKGLDGGRLSIGTCSLGAAAKCFDIAREYVKTRKQFGKPLINNQALAFRLSDMATDLQLSRLMIRQGAKLLDAKDPNARAFAAMAKQVSTDLGFKICNEALQLHGGYGYLKDYPIERYLRDVRVHQILEGTNEIMRVIISRQLAA 355          
BLAST of mRNA_S-firma_F_contig10862.1152.1 vs. uniprot
Match: A0A5J6N0Q2_9PROT (Acyl-CoA dehydrogenase n=1 Tax=Hypericibacter adhaerens TaxID=2602016 RepID=A0A5J6N0Q2_9PROT)

HSP 1 Score: 393 bits (1009), Expect = 3.240e-134
Identity = 192/261 (73.56%), Postives = 216/261 (82.76%), Query Frame = 1
Query:   22 RFASYCLTEPNSGSDAASLSTKAVRDGDHYVVNGSKAFISGGSRSDAYIIMVRTGGPGPSGVSCLVVENGTPGLSFGAQERKLGWNTQPTAAVILEDCRVPVANRLGEEGDGFTIAMKGLDGGRISIGTCSVGAASTCFSLARDHVLVRKQFGAPLAHNQHVAFKVNDMATDLVTARMLIRQAAAMLDDKHPNARAFCAMAKRVATDSGFNICNDALQLHGGYGYLKDYPVERFLRDVRVHQILEGTNEIMRHIVSRQLLA 804
            + ASYCLTEP SGSDAA+L T+A R GDHY++NG+KAFISGG RSD Y+ MVRTG  GP G+SCLV+E GTPGLSFG QERKLGWN QPTA VI E+ RVPVANRLGEEG GF+IAM GLDGGRI+IG CS+GAA  C  LAR+HV  RKQFG PL   Q V FK+ DMAT+L  AR++IR AAA LD K P A A+CAMAKR ATD+GF ICN+ALQLHGGYGYLKDYPVERFLRD RVHQILEGTNEIMR IV+R+L+A
Sbjct:  118 KIASYCLTEPGSGSDAAALKTRAERQGDHYILNGTKAFISGGGRSDLYVCMVRTGAEGPKGISCLVIEKGTPGLSFGKQERKLGWNAQPTAMVIFENARVPVANRLGEEGQGFSIAMGGLDGGRINIGACSLGAARACLELAREHVATRKQFGHPLNEFQSVQFKLADMATELEAARLMIRGAAARLDAKDPEATAYCAMAKRFATDAGFAICNEALQLHGGYGYLKDYPVERFLRDARVHQILEGTNEIMRVIVARRLMA 378          
BLAST of mRNA_S-firma_F_contig10862.1152.1 vs. uniprot
Match: A0A7S2XV87_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV87_9STRA)

HSP 1 Score: 387 bits (993), Expect = 2.970e-133
Identity = 184/261 (70.50%), Postives = 221/261 (84.67%), Query Frame = 1
Query:   22 RFASYCLTEPNSGSDAASLSTKAVRDGDHYVVNGSKAFISGGSRSDAYIIMVRTGGPGPSGVSCLVVENGTPGLSFGAQERKLGWNTQPTAAVILEDCRVPVANRLGEEGDGFTIAMKGLDGGRISIGTCSVGAASTCFSLARDHVLVRKQFGAPLAHNQHVAFKVNDMATDLVTARMLIRQAAAMLDDKHPNARAFCAMAKRVATDSGFNICNDALQLHGGYGYLKDYPVERFLRDVRVHQILEGTNEIMRHIVSRQLLA 804
            +FASYCLTEPNSGSDAASLST+AVR+GD+Y++NGSKAFISGG  SD Y++MVRTG  GP+G++ L+V+  TPGLSFGA E K+GW  QPTAAVI EDC VP++NRLG+EGDGF IAM+GL+GGRISI TCSVG A  C   AR+++L RKQFG+PLA+NQ++ FK+ DMATDL  +R+++R AAA+LD K PNA   CAMAKR ATD GF+ICN ALQ+HGGYGYLKDYPVERF+RD+RVH ILEGTNEIMR I+SR LL 
Sbjct:   24 KFASYCLTEPNSGSDAASLSTRAVREGDNYILNGSKAFISGGGVSDVYLVMVRTGDEGPTGITSLLVDKDTPGLSFGANESKMGWKNQPTAAVIFEDCPVPISNRLGDEGDGFKIAMRGLNGGRISIATCSVGGAQACLEHARNYLLERKQFGSPLANNQYLQFKLADMATDLSASRLMVRNAAALLDAKDPNATVACAMAKRFATDKGFDICNYALQMHGGYGYLKDYPVERFVRDLRVHSILEGTNEIMRLIISRNLLG 284          
BLAST of mRNA_S-firma_F_contig10862.1152.1 vs. uniprot
Match: A0A0N1LMD8_9PROT (Acyl-CoA dehydrogenase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0N1LMD8_9PROT)

HSP 1 Score: 386 bits (992), Expect = 1.120e-131
Identity = 182/261 (69.73%), Postives = 218/261 (83.52%), Query Frame = 1
Query:   22 RFASYCLTEPNSGSDAASLSTKAVRDGDHYVVNGSKAFISGGSRSDAYIIMVRTGGPGPSGVSCLVVENGTPGLSFGAQERKLGWNTQPTAAVILEDCRVPVANRLGEEGDGFTIAMKGLDGGRISIGTCSVGAASTCFSLARDHVLVRKQFGAPLAHNQHVAFKVNDMATDLVTARMLIRQAAAMLDDKHPNARAFCAMAKRVATDSGFNICNDALQLHGGYGYLKDYPVERFLRDVRVHQILEGTNEIMRHIVSRQLLA 804
            +FASYCLTEP +GSDAASL T+A RDGDHYV+NGSKAFISGG  SD Y++MVRTGGPGP G+SCLVVE GTPGLSFG QE+K+GWN+QPTA VI EDCRVPVANRLG EGDGF IAMKGLDGGR++I +CS+G A  C + AR+H+ VR+QFG  L+  Q + FK  DMAT+L  AR+++ + AA LD  HP+A  +CAMAKR ATD+GF + NDALQLHGGYGY+++YPVER LRD+RVHQILEGTNEIMR I++R+LL 
Sbjct:  118 KFASYCLTEPGAGSDAASLRTRAERDGDHYVLNGSKAFISGGGASDIYVVMVRTGGPGPKGISCLVVEKGTPGLSFGKQEKKMGWNSQPTAQVIFEDCRVPVANRLGAEGDGFKIAMKGLDGGRLNIASCSLGGARACLNAAREHMEVRQQFGKKLSEFQALQFKFADMATELEAARLMVHRGAAALDAGHPDATLYCAMAKRFATDAGFTVANDALQLHGGYGYIREYPVERILRDLRVHQILEGTNEIMRVIIARRLLG 378          
BLAST of mRNA_S-firma_F_contig10862.1152.1 vs. uniprot
Match: W9H316_9PROT (Acyl-CoA dehydrogenase n=5 Tax=Skermanella TaxID=204447 RepID=W9H316_9PROT)

HSP 1 Score: 385 bits (990), Expect = 2.180e-131
Identity = 183/262 (69.85%), Postives = 219/262 (83.59%), Query Frame = 1
Query:   19 QRFASYCLTEPNSGSDAASLSTKAVRDGDHYVVNGSKAFISGGSRSDAYIIMVRTGGPGPSGVSCLVVENGTPGLSFGAQERKLGWNTQPTAAVILEDCRVPVANRLGEEGDGFTIAMKGLDGGRISIGTCSVGAASTCFSLARDHVLVRKQFGAPLAHNQHVAFKVNDMATDLVTARMLIRQAAAMLDDKHPNARAFCAMAKRVATDSGFNICNDALQLHGGYGYLKDYPVERFLRDVRVHQILEGTNEIMRHIVSRQLLA 804
            + FASYCLTEP +GSDAASL T+A RDGDHYV+NGSKAFISGG  +D Y++MVRTG PGP G+SC+VVE GTPGLSFG +ERKLGWN+QPTAAVI +DCRVPVANRLG EGDGF IAMKGLDGGR++I  CS+G A  C  LARDH+ VR+QFG  LA  Q + F++ DMAT+L  AR+++ + AA LDD    A  +CAMAKR ATD+GF ICN+ALQLHGGYGY+++YPVER+LRDVRVHQILEGTNEIMR I++R+LL+
Sbjct:  117 EHFASYCLTEPGAGSDAASLKTRAERDGDHYVLNGSKAFISGGGVADIYVVMVRTGEPGPKGISCVVVEKGTPGLSFGKKERKLGWNSQPTAAVIFDDCRVPVANRLGAEGDGFRIAMKGLDGGRLNISACSLGGARACLELARDHMNVRQQFGRKLADFQALQFRLADMATELEAARLMVHRGAAKLDDGGSEATLYCAMAKRFATDAGFKICNEALQLHGGYGYIREYPVERYLRDVRVHQILEGTNEIMRLIIARRLLS 378          
BLAST of mRNA_S-firma_F_contig10862.1152.1 vs. uniprot
Match: A0A2E5PQH2_9PROT (Acyl-CoA dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PQH2_9PROT)

HSP 1 Score: 384 bits (985), Expect = 1.380e-130
Identity = 177/262 (67.56%), Postives = 216/262 (82.44%), Query Frame = 1
Query:   19 QRFASYCLTEPNSGSDAASLSTKAVRDGDHYVVNGSKAFISGGSRSDAYIIMVRTGGPGPSGVSCLVVENGTPGLSFGAQERKLGWNTQPTAAVILEDCRVPVANRLGEEGDGFTIAMKGLDGGRISIGTCSVGAASTCFSLARDHVLVRKQFGAPLAHNQHVAFKVNDMATDLVTARMLIRQAAAMLDDKHPNARAFCAMAKRVATDSGFNICNDALQLHGGYGYLKDYPVERFLRDVRVHQILEGTNEIMRHIVSRQLLA 804
            + FASYCLTEP +GSDAASL TKAV DGDHYV+NG+KAFISGGS SD Y+ MVRTGG GPSG+SCLVVE   PGLSFG +E KLGWN+QPTAAVI EDCRVP ANR+GEEGDGF IAM GLDGGR+++  CS+G A  C   AR H++ R+QFG P+A  Q + FK+ DMAT++  AR+++R+AA  LD  HP A  +CAMAKR ATD+GF +CN+ALQ+HGGYGY+K+YP++R++RDVRVHQILEGTNEIMR I++R+LL 
Sbjct:  120 KHFASYCLTEPGAGSDAASLQTKAVLDGDHYVLNGTKAFISGGSTSDVYVCMVRTGGEGPSGISCLVVEKDAPGLSFGKKEAKLGWNSQPTAAVIFEDCRVPAANRIGEEGDGFKIAMMGLDGGRLNVAACSIGGARVCMEAARSHMIQRRQFGRPIADFQALQFKLADMATEIEAARLMVRRAAGALDAGHPEATQYCAMAKRFATDTGFQVCNEALQIHGGYGYIKEYPIQRYMRDVRVHQILEGTNEIMRVIIARRLLC 381          
BLAST of mRNA_S-firma_F_contig10862.1152.1 vs. uniprot
Match: A0A5J6MJG0_9PROT (Acyl-CoA dehydrogenase n=1 Tax=Hypericibacter terrae TaxID=2602015 RepID=A0A5J6MJG0_9PROT)

HSP 1 Score: 384 bits (985), Expect = 1.430e-130
Identity = 187/261 (71.65%), Postives = 216/261 (82.76%), Query Frame = 1
Query:   22 RFASYCLTEPNSGSDAASLSTKAVRDGDHYVVNGSKAFISGGSRSDAYIIMVRTGGPGPSGVSCLVVENGTPGLSFGAQERKLGWNTQPTAAVILEDCRVPVANRLGEEGDGFTIAMKGLDGGRISIGTCSVGAASTCFSLARDHVLVRKQFGAPLAHNQHVAFKVNDMATDLVTARMLIRQAAAMLDDKHPNARAFCAMAKRVATDSGFNICNDALQLHGGYGYLKDYPVERFLRDVRVHQILEGTNEIMRHIVSRQLLA 804
            + ASYCLTEP SGSDAA+L T+AVR+GDHY++NG KAFISG  RSD Y+ MVRTG  GP G+SCL++E GTPGLSFG QERKLGWN+QPTA +I E+ RVPVANRLGEEG GF+IAM GLDGGRI+IG CS+GAA TC  LAR+HV  RKQFG  L   Q V FK+ DMAT+L  AR++IR AAA LD K P A  + AMAKR ATD+GF ICN+ALQLHGGYGYLKDYP+ERFLRDVRVHQILEGTNEIMR I++R+L+A
Sbjct:  118 KIASYCLTEPGSGSDAAALKTRAVREGDHYLLNGGKAFISGADRSDLYVCMVRTGVDGPKGISCLMIEKGTPGLSFGKQERKLGWNSQPTAMLIFENARVPVANRLGEEGQGFSIAMGGLDGGRINIGACSLGAARTCLELAREHVASRKQFGHALNEFQSVQFKLADMATELEAARLMIRSAAARLDAKDPEATVYSAMAKRFATDAGFAICNEALQLHGGYGYLKDYPIERFLRDVRVHQILEGTNEIMRVIIARRLMA 378          
BLAST of mRNA_S-firma_F_contig10862.1152.1 vs. uniprot
Match: A0A3M1JTY6_9PROT (Acyl-CoA dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JTY6_9PROT)

HSP 1 Score: 382 bits (981), Expect = 5.060e-130
Identity = 187/261 (71.65%), Postives = 217/261 (83.14%), Query Frame = 1
Query:   19 QRFASYCLTEPNSGSDAASLSTKAVRDGDHYVVNGSKAFISGGSRSDAYIIMVRTGGPGPSGVSCLVVENGTPGLSFGAQERKLGWNTQPTAAVILEDCRVPVANRLGEEGDGFTIAMKGLDGGRISIGTCSVGAASTCFSLARDHVLVRKQFGAPLAHNQHVAFKVNDMATDLVTARMLIRQAAAMLDDKHPNARAFCAMAKRVATDSGFNICNDALQLHGGYGYLKDYPVERFLRDVRVHQILEGTNEIMRHIVSRQLL 801
            + FASYCLTEP +GSDAASL T+AVRDGDHYV+NGSKAFISGG  SD Y++MVRTG  GP G+S LVVEN TPGLSFGAQE+KLGW +QPT+AVI EDCRVPVANRLGEEGDGF IAM GLDGGR++IG CS+GAA  C   A  +V  RKQFG PLA  Q + FK+ DMAT+L  AR+L+ +AAA LD K P+A  +CAMAKR ATD GFN+ N+ALQLHGGYGYL+DYP+ERF RD+RVHQILEGTNEIMR I++R+LL
Sbjct:  117 EHFASYCLTEPGAGSDAASLKTRAVRDGDHYVLNGSKAFISGGGSSDIYVVMVRTGEDGPKGISTLVVENDTPGLSFGAQEKKLGWKSQPTSAVIFEDCRVPVANRLGEEGDGFKIAMMGLDGGRLNIGACSLGAARRCLEEALAYVQDRKQFGKPLAAFQALQFKLADMATELEAARLLLHKAAAKLDAKAPDATQYCAMAKRYATDVGFNVVNEALQLHGGYGYLRDYPIERFFRDLRVHQILEGTNEIMRVIIARKLL 377          
BLAST of mRNA_S-firma_F_contig10862.1152.1 vs. uniprot
Match: I3TKC3_TISMK (Acyl-CoA dehydrogenase domain-containing protein n=6 Tax=Tistrella TaxID=171436 RepID=I3TKC3_TISMK)

HSP 1 Score: 382 bits (980), Expect = 8.210e-130
Identity = 186/261 (71.26%), Postives = 213/261 (81.61%), Query Frame = 1
Query:   19 QRFASYCLTEPNSGSDAASLSTKAVRDGDHYVVNGSKAFISGGSRSDAYIIMVRTGGPGPSGVSCLVVENGTPGLSFGAQERKLGWNTQPTAAVILEDCRVPVANRLGEEGDGFTIAMKGLDGGRISIGTCSVGAASTCFSLARDHVLVRKQFGAPLAHNQHVAFKVNDMATDLVTARMLIRQAAAMLDDKHPNARAFCAMAKRVATDSGFNICNDALQLHGGYGYLKDYPVERFLRDVRVHQILEGTNEIMRHIVSRQLL 801
            + FASYCLTEP +GSDAASL T+AVRDGDHYV+NGSKAFISGG RSD Y++MVRTGG GP G+S LVVE  TPGLSFGA ERKLGWN+QPTAAVI EDCRVPV NRLGEEGDGF IAM GLDGGRI+IG CS+GAA      AR++V  R+QFG  LA  Q   F++ DM T+L  AR++IR+AA  LD +HP   A CA AKR ATD+GF ICN+ALQLHGGYGYL DYP+ER+LRD RVHQILEGTNEIMR I++R+LL
Sbjct:  117 EHFASYCLTEPGAGSDAASLRTRAVRDGDHYVLNGSKAFISGGGRSDIYVVMVRTGGDGPKGISTLVVEKDTPGLSFGANERKLGWNSQPTAAVIFEDCRVPVENRLGEEGDGFKIAMMGLDGGRINIGACSIGAARASLDAAREYVQGRQQFGKALAEFQATQFRLADMMTELEAARLMIRRAAWSLDSQHPEKTAICASAKRFATDAGFRICNEALQLHGGYGYLMDYPIERYLRDARVHQILEGTNEIMRVIIARRLL 377          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10862.1152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CCF0_9STRA3.570e-14276.92Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A812Z3I9_9DINO2.650e-14175.19Acad8 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A5J6N0Q2_9PROT3.240e-13473.56Acyl-CoA dehydrogenase n=1 Tax=Hypericibacter adha... [more]
A0A7S2XV87_9STRA2.970e-13370.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0N1LMD8_9PROT1.120e-13169.73Acyl-CoA dehydrogenase n=3 Tax=Alphaproteobacteria... [more]
W9H316_9PROT2.180e-13169.85Acyl-CoA dehydrogenase n=5 Tax=Skermanella TaxID=2... [more]
A0A2E5PQH2_9PROT1.380e-13067.56Acyl-CoA dehydrogenase n=1 Tax=Rhodospirillaceae b... [more]
A0A5J6MJG0_9PROT1.430e-13071.65Acyl-CoA dehydrogenase n=1 Tax=Hypericibacter terr... [more]
A0A3M1JTY6_9PROT5.060e-13071.65Acyl-CoA dehydrogenase n=1 Tax=Alphaproteobacteria... [more]
I3TKC3_TISMK8.210e-13071.26Acyl-CoA dehydrogenase domain-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10862contigS-firma_F_contig10862:3983..4887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog1110502.TMO_1372
PFAMsAcyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
Max annot lvl204441|Rhodospirillales
Evalue1.35e-130
EggNOG OGsCOG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TQKE@28211|Alphaproteobacteria,2JPPM@204441|Rhodospirillales
DescriptionCOG1960 Acyl-CoA dehydrogenases
COG categoryI
Hectar predicted targeting categoryother localisation
Exons3
Model size807
Cds size807
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10862.1152.1prot_S-firma_F_contig10862.1152.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10862 3983..4887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815630.093868-CDS-S-firma_F_contig10862:3982..41351622815630.093868-CDS-S-firma_F_contig10862:3982..4135Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10862 3983..4135 -
1696949465.6350858-CDS-S-firma_F_contig10862:3982..41351696949465.6350858-CDS-S-firma_F_contig10862:3982..4135Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10862 3983..4135 -
1622815630.108866-CDS-S-firma_F_contig10862:4187..47121622815630.108866-CDS-S-firma_F_contig10862:4187..4712Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10862 4188..4712 -
1696949465.6497703-CDS-S-firma_F_contig10862:4187..47121696949465.6497703-CDS-S-firma_F_contig10862:4187..4712Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10862 4188..4712 -
1622815630.1203425-CDS-S-firma_F_contig10862:4758..48871622815630.1203425-CDS-S-firma_F_contig10862:4758..4887Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10862 4759..4887 -
1696949465.6594641-CDS-S-firma_F_contig10862:4758..48871696949465.6594641-CDS-S-firma_F_contig10862:4758..4887Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10862 4759..4887 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10862.1152.1

>prot_S-firma_F_contig10862.1152.1 ID=prot_S-firma_F_contig10862.1152.1|Name=mRNA_S-firma_F_contig10862.1152.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=269bp
PPPPLPQRFASYCLTEPNSGSDAASLSTKAVRDGDHYVVNGSKAFISGGS
RSDAYIIMVRTGGPGPSGVSCLVVENGTPGLSFGAQERKLGWNTQPTAAV
ILEDCRVPVANRLGEEGDGFTIAMKGLDGGRISIGTCSVGAASTCFSLAR
DHVLVRKQFGAPLAHNQHVAFKVNDMATDLVTARMLIRQAAAMLDDKHPN
ARAFCAMAKRVATDSGFNICNDALQLHGGYGYLKDYPVERFLRDVRVHQI
LEGTNEIMRHIVSRQLLA*
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mRNA from alignment at S-firma_F_contig10862:3983..4887-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10862.1152.1 ID=mRNA_S-firma_F_contig10862.1152.1|Name=mRNA_S-firma_F_contig10862.1152.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=905bp|location=Sequence derived from alignment at S-firma_F_contig10862:3983..4887- (Sphaerotrichia firma ET2_F female)
CCCCCCCCCCCCTTACCTCAGCGCTTTGCCTCGTACTGCCTCACGGAGCC AAACAGCGGCAGTGACGCCGCTTCCCTGTCCACCAAAGCCGTCCGCGATG GTGACCACTACGTTGTCAACGGCTCCAAGGTACGCCCCATCCCTCCTCCC CACGGTGCACCTCACACCCTCTCAGGCCTTTATCAGCGGTGGCAGCCGGA GTGACGCGTACATCATCATGGTGCGCACGGGGGGCCCGGGCCCCAGCGGC GTGTCGTGCTTGGTTGTGGAGAACGGCACCCCAGGTCTGTCCTTTGGCGC CCAGGAGCGCAAACTGGGGTGGAACACGCAACCCACGGCGGCCGTCATTC TGGAGGACTGCCGGGTGCCCGTTGCCAATCGCCTGGGGGAAGAAGGTGAC GGCTTCACGATTGCCATGAAGGGCTTGGACGGCGGCCGCATCAGCATTGG GACCTGCAGCGTGGGTGCGGCGTCCACGTGCTTTTCCCTCGCACGGGACC ACGTGCTTGTGCGGAAGCAGTTTGGGGCCCCCCTTGCCCACAACCAGCAC GTGGCCTTCAAAGTCAACGACATGGCCACCGACTTGGTGACGGCCCGCAT GCTGATTCGGCAGGCGGCTGCCATGCTGGACGACAAGCACCCTAACGCGC GGGCGTTCTGCGCCATGGCCAAACGTGTGGCGACTGACTCTGGGTTCAAC GTGGGTGTTGTGCGGCGAGGTTGTGTTCTGGCTCACCCTTCCCCCCTCTC AGATTTGTAACGACGCCCTCCAGCTCCATGGCGGCTACGGGTACTTGAAG GACTACCCTGTGGAGCGCTTCCTCAGGGACGTGCGCGTGCACCAAATCCT GGAGGGCACCAACGAAATCATGCGGCACATTGTCTCCCGCCAGCTGTTAG CGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10862:3983..4887-

>mRNA_S-firma_F_contig10862.1152.1 ID=mRNA_S-firma_F_contig10862.1152.1|Name=mRNA_S-firma_F_contig10862.1152.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1614bp|location=Sequence derived from alignment at S-firma_F_contig10862:3983..4887- (Sphaerotrichia firma ET2_F female)
CCCCCCCCCCCCTTACCTCAGCGCTTTGCCTCGTACTGCCTCACGGAGCC
AAACAGCGGCAGTGACGCCGCTTCCCTGTCCACCAAAGCCGTCCGCGATG
GTGACCACTACGTTGTCAACGGCTCCAAGCCCCCCCCCCCCTTACCTCAG
CGCTTTGCCTCGTACTGCCTCACGGAGCCAAACAGCGGCAGTGACGCCGC
TTCCCTGTCCACCAAAGCCGTCCGCGATGGTGACCACTACGTTGTCAACG
GCTCCAAGGCCTTTATCAGCGGTGGCAGCCGGAGTGACGCGTACATCATC
ATGGTGCGCACGGGGGGCCCGGGCCCCAGCGGCGTGTCGTGCTTGGTTGT
GGAGAACGGCACCCCAGGTCTGTCCTTTGGCGCCCAGGAGCGCAAACTGG
GGTGGAACACGCAACCCACGGCGGCCGTCATTCTGGAGGACTGCCGGGTG
CCCGTTGCCAATCGCCTGGGGGAAGAAGGTGACGGCTTCACGATTGCCAT
GAAGGGCTTGGACGGCGGCCGCATCAGCATTGGGACCTGCAGCGTGGGTG
CGGCGTCCACGTGCTTTTCCCTCGCACGGGACCACGTGCTTGTGCGGAAG
CAGTTTGGGGCCCCCCTTGCCCACAACCAGCACGTGGCCTTCAAAGTCAA
CGACATGGCCACCGACTTGGTGACGGCCCGCATGCTGATTCGGCAGGCGG
CTGCCATGCTGGACGACAAGCACCCTAACGCGCGGGCGTTCTGCGCCATG
GCCAAACGTGTGGCGACTGACTCTGGGTTCAACGCCTTTATCAGCGGTGG
CAGCCGGAGTGACGCGTACATCATCATGGTGCGCACGGGGGGCCCGGGCC
CCAGCGGCGTGTCGTGCTTGGTTGTGGAGAACGGCACCCCAGGTCTGTCC
TTTGGCGCCCAGGAGCGCAAACTGGGGTGGAACACGCAACCCACGGCGGC
CGTCATTCTGGAGGACTGCCGGGTGCCCGTTGCCAATCGCCTGGGGGAAG
AAGGTGACGGCTTCACGATTGCCATGAAGGGCTTGGACGGCGGCCGCATC
AGCATTGGGACCTGCAGCGTGGGTGCGGCGTCCACGTGCTTTTCCCTCGC
ACGGGACCACGTGCTTGTGCGGAAGCAGTTTGGGGCCCCCCTTGCCCACA
ACCAGCACGTGGCCTTCAAAGTCAACGACATGGCCACCGACTTGGTGACG
GCCCGCATGCTGATTCGGCAGGCGGCTGCCATGCTGGACGACAAGCACCC
TAACGCGCGGGCGTTCTGCGCCATGGCCAAACGTGTGGCGACTGACTCTG
GGTTCAACATTTGTAACGACGCCCTCCAGCTCCATGGCGGCTACGGGTAC
TTGAAGGACTACCCTGTGGAGCGCTTCCTCAGGGACGTGCGCGTGCACCA
AATCCTGGAGGGCACCAACGAAATCATGCGGCACATTGTCTCCCGCCAGC
TGTTAGCGTAGATTTGTAACGACGCCCTCCAGCTCCATGGCGGCTACGGG
TACTTGAAGGACTACCCTGTGGAGCGCTTCCTCAGGGACGTGCGCGTGCA
CCAAATCCTGGAGGGCACCAACGAAATCATGCGGCACATTGTCTCCCGCC
AGCTGTTAGCGTAG
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