mRNA_S-firma_F_contig1086.1147.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1086.1147.1
Unique NamemRNA_S-firma_F_contig1086.1147.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1086.1147.1 vs. uniprot
Match: D7FTK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK5_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 9.100e-106
Identity = 182/320 (56.88%), Postives = 233/320 (72.81%), Query Frame = 1 
Query:  139 SCDSDLTAVGIGEGEELMTVVRIVTTLISLTVTSAWFSWRKVKRLSLFFAHWLAGLVAQLGYLVEDAMVTLCWTTSNLEGFVKALKFIELSAFNMFAVTNLAICVNLALVVSSHRTMTRVKSVSTPPLLLVFLAISMALATPIVPLGQRTIVAGTSFYVVNNDVEGNDFIQISFFYVEFFVGICMFLIVAWLLLFRLAEVKECWKIHARIRFYFCLTLIATAVNLGIGICGLVNTLSDGYVIPLIIWSWVFRYIHVALDTIVLYGVLRERSIDERG----DGNXXXXXXXXXXXXXXXRRTSKRGLPRGSGASNNTSKPV 1086
            SC++  TA+G+ EGE+ +T +R+++TL+S++V SAW SW KVKRLSLFFAHWL+GLV  L ++VED MVT+CWT S+L GF+KA+KFIE  + NM A+T+LAICVNLAL+VSSHRT+TRV+SVS+P LL + LAIS+ + +  VPL +   V GT F++VN+D    D + +S F++EF VGICMF+I+AWLLLFR+ EVKECW+I ARIR+YFCLTL+ TAVN+GIGIC  V  + D     L IWSWV RYIHVALDT VLYGVLRE+ +DERG      N               RR  K   PR  G+S NT+ P 
Sbjct:    6 SCETGFTAIGLQEGEDKITPIRVLSTLVSVSVVSAWCSWTKVKRLSLFFAHWLSGLVWGLCFVVEDMMVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAISIGITSVTVPLWETVYVIGTGFWIVNSDQGSYDAVVVSIFFLEFMVGICMFVILAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLYGVLREKDMDERGGNARSSNYNCNDSANSSGLVVSRRHGKSS-PRSGGSSINTTNPT 324
[Close]
BLAST of mRNA_S-firma_F_contig1086.1147.1 vs. uniprot
Match: D7FTK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK4_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 5.710e-76
Identity = 131/221 (59.28%), Postives = 169/221 (76.47%), Query Frame = 1 
Query:  301 GLVAQLGYLVEDAMVTLCWTTSNLEGFVKALKFIELSAFNMFAVTNLAICVNLALVVSSHRTMTRVKSVSTPPLLLVFLAISMALATPIVPLGQRTIVAGTSFYVVNNDVEGNDFIQISFFYVEFFVGICMFLIVAWLLLFRLAEVKECWKIHARIRFYFCLTLIATAVNLGIGICGLVNTLSDGYVIPLIIWSWVFRYIHVALDTIVLYGVLRERSIDER 963
            G++  L +LVED MVT+CW   NLE  +K +KF+EL++ +M A+T+LAICVNLAL+VSSHRT+ RV+SVS+P LL + LAISM +    VPL +  IV GTSF++VN+D    D + +S F++EF VG+CMF+IVAWLLLFRL EVKECW+IHARIR+Y CLT++ T ++L IGIC  V  L       L IW+WVFRYIH+ALDT VLYGVLRE+ +DER
Sbjct:   11 GIIWSLCWLVEDMMVTVCWAGKNLEDLIKTVKFVELASSHMLALTHLAICVNLALIVSSHRTLKRVQSVSSPGLLTLMLAISMGMTAATVPLWETVIVVGTSFWIVNSDQGKYDAVVVSIFFLEFIVGLCMFVIVAWLLLFRLKEVKECWRIHARIRYYLCLTVLGTGISLSIGICSTVFVLGGLKQTRLAIWAWVFRYIHIALDTFVLYGVLREKDMDER 231
[Close]
BLAST of mRNA_S-firma_F_contig1086.1147.1 vs. uniprot
Match: D8LNM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM4_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 2.030e-73
Identity = 127/238 (53.36%), Postives = 180/238 (75.63%), Query Frame = 1 
Query:  142 CDSDLTAVGIGEGEELMTVVRIVTTLISLTVTSAWFSWRK-VKRLSLFFAHWLAGLVAQLGYLVEDAMVTLCWTTSNLEGFVKALKFIELSAFNMFAVTNLAICVNLALVVSSHRTMTRVKSVSTPPLLLVFLAISMALATPIVPLGQRTIVAGTSFYVVNNDVEGNDFIQISFFYVEFFVGICMFLIVAWLLLFRLAEVKECWKIHARIRFYFCLTLIATAVNLGIGICGLVNTLSD 852
            C++    VG+ EGE + T +R+++TLI+++V SAWFS RK +K+L LFF+HWL+GL+ QL ++ E  MV++CW   +L   +K LKF EL+A NM A+TNLAICVNLAL+V SHRT++RV+S STP L+LVFLA+S+ +A   VP     +V+GT+F+V  ++   +D+I ++ F+VEFFVGICM +IV WL++FR  E+K+ WK+HARIR+YF LTLIAT VNL +GICG +  + D
Sbjct:   32 CNAGFFVVGLQEGEAVCTPIRVISTLITMSVASAWFSRRKSIKKLLLFFSHWLSGLLHQLVFMTEATMVSVCWAGDSLTKLIKTLKFFELAASNMLAITNLAICVNLALIVMSHRTLSRVRSASTPALILVFLALSLGVAAISVPFWTEMVVSGTAFWVQTHEQAAHDWIVVAGFFVEFFVGICMLVIVVWLVIFRRTEIKQSWKMHARIRYYFGLTLIATGVNLALGICGTIYVVGD 269
[Close]
BLAST of mRNA_S-firma_F_contig1086.1147.1 vs. uniprot
Match: A0A6H5JWL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWL8_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 1.260e-70
Identity = 120/226 (53.10%), Postives = 161/226 (71.24%), Query Frame = 1 
Query:  298 AGLVAQLGYLVEDAMVTLCWTTSNLEGFVKALKFIELSAFNMFAVTNLAICVNLALVVSSHRTMTRVKSVSTPPLLLVFLAISMALATPIVPLGQRTIVAGTSFYVVNNDVEGNDFIQISFFYVEFFVGICMFLIVAWLLLFRLAEVKECWKIHARIRFYFCLTLIATAVNLGIGICGLVNTLSDGYVIPLIIWSWVFRYIHVALDTIVLYGVLRERSIDERGDGN 975
            +G +  L  + ED MV+ C+  +NL G +K + F+ +++ NM A TNL IC+NLAL+VSSHRTMTRVK+VS+P +L + L +S +LA   VPL + T+V GT F+  N+D   NDFI +S + +EF VGICM +IV WL +FR+ E+KECW+ H+RIR+YFCLTL  TAVNLG+GICG      D       IWSW+FRYIH++ DT+VLYG LRE SIDER + +
Sbjct:    9 SGTLVCLALMTEDVMVSACYAATNLVGLIKTINFVMMTSSNMLAATNLGICINLALIVSSHRTMTRVKTVSSPRVLFIMLLVSASLAAATVPLWETTVVLGTHFWFTNSDPVKNDFIIMSIYIIEFLVGICMLVIVFWLAMFRMTEIKECWRFHSRIRYYFCLTLFGTAVNLGLGICGAAYVFGDRKEPLPQIWSWLFRYIHISFDTLVLYGALREGSIDERAEAD 234
[Close]
BLAST of mRNA_S-firma_F_contig1086.1147.1 vs. uniprot
Match: D8LNN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN1_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 8.060e-66
Identity = 119/200 (59.50%), Postives = 150/200 (75.00%), Query Frame = 1 
Query:  340 MVTLCWTTSNLEGFVKALKFIELSAFNMFAVTNLAICVNLALVVSSHRTMTRVKSVSTPPLLLVFLAISMALATPIVPLGQRTIVAGTSFYVVNNDVEGNDFIQISFFYVEFFVGICMFLIVAWLLLFRLAEVKECWKIHARIRFYFCLTLIATAVNLGIGICGLVNTLSDGYVIPLIIWSWVFRYIHVALDTIVLYGVL 939
            MV +CW  SN+ GFVKALKF+EL A NM A+TNLAIC NLALV+ SHRT+ RVKS S+P L+ + LA+S+A+A    P  Q T+V+GT F V N D    D++ +S F++EF VGICMF+IVAWLLLFR+ EVKECWK+HARIR+YF LTLI T VNL +G+CG +  +       LI+ +W FR+IH+ALDT VLYGVL
Sbjct:    1 MVLVCWAGSNVTGFVKALKFLELVASNMLAITNLAICANLALVIMSHRTLARVKSFSSPSLVFLSLAVSIAVAVAAAPFWQTTVVSGTGFAVRNEDQRSGDWLAVSRFFLEFLVGICMFVIVAWLLLFRINEVKECWKVHARIRYYFGLTLIGTTVNLALGVCGTIYVVGGREKSLLIVLTWTFRHIHIALDTFVLYGVL 200
[Close]
BLAST of mRNA_S-firma_F_contig1086.1147.1 vs. uniprot
Match: A0A6H5K8K6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K6_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 1.280e-65
Identity = 126/254 (49.61%), Postives = 168/254 (66.14%), Query Frame = 1 
Query:  325 LVEDAMVTLCWTTSNLEGFVKALKFIELSAFNMFAVTNLAICVNLALVVSSHRTMTRVKSVSTPPLLLVFLAISMALATPIVPLGQRTIVAGTSFYVVNNDVEGNDFIQISFFYVEFFVGICMFLIVAWLLLFRLAEVKECWKIHARIRFYFCLTLIATAVNLGIGICGLVNTLSDGYVIPLIIWSWVFRYIHVALDTIVLYGVLRERSIDERGDG---NXXXXXXXXXXXXXXXRRTSKRGLPRGSGASNNTS 1077
            + +  M+++CW    LEGF+KALK++E ++ NM A+TNLAIC+NLALVV+SHRT++RV SVSTP L+L+FLAIS+  A   VP    T+V+GT+F+V N D    D+I +S   +EF VGICMF+IV+WL+ FR+  +KECWK+HARIR+YF LT+I TAVNL +GI G            L+  +W FRY HVALDTIVLYGVL  R +DE G                     R ++ RG+ + SG SN +S
Sbjct:    3 MTQGTMISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVNSVSTPALVLLFLAISVVAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFIIVSWLMAFRMRAIKECWKLHARIRYYFVLTVIGTAVNLALGISGFSYVFRANAGEYLLSLTWAFRYAHVALDTIVLYGVLGTRHMDEGGGSAASTSGTSSGRLPASSGLPRPSNHRGMKKQSGLSNTSS 256
[Close]
BLAST of mRNA_S-firma_F_contig1086.1147.1 vs. uniprot
Match: D8LNP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP0_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 2.720e-59
Identity = 109/210 (51.90%), Postives = 151/210 (71.90%), Query Frame = 1 
Query:  340 MVTLCWTTSNLEGFVKALKFIELSAFNMFAVTNLAICVNLALVVSSHRTMTRVKSVSTPPLLLVFLAISMALATPIVPLGQRTIVAGTSFYVVNNDVEGNDFIQISFFYVEFFVGICMFLIVAWLLLFRLAEVKECWKIHARIRFYFCLTLIATAVNLGIGICGLVNTLSDGYVIPLIIWSWVFRYIHVALDTIVLYGVLRERSIDERGD 969
            M+++CW   NL  F+K LKF+EL A NM A+TNLAICVNL+L+V S R  + VKS+ST  L+L+FLA+S  LA   VP    T+++GT F+ +  +   ++F+ IS F VEF VGICMF+IV+WLLLFR+ E+KECW +HA +R+YF LTL+ T  NL +G+CG +  +SD     L+I+SW FR + +ALDTIVL+ VL  +S+DER +
Sbjct:    1 MISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVKSISTHKLVLLFLALSAGLAAIAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGICMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQVRIALDTIVLHSVLATKSVDERAE 210
[Close]
BLAST of mRNA_S-firma_F_contig1086.1147.1 vs. uniprot
Match: D8LNN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN2_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 4.050e-55
Identity = 102/171 (59.65%), Postives = 132/171 (77.19%), Query Frame = 1 
Query:  340 MVTLCWTTSNLEGFVKALKFIELSAFNMFAVTNLAICVNLALVVSSHRTMTRVKSVSTPPLLLVFLAISMALATPIVPLGQRTIVAGTSFYVVNNDVEGNDFIQISFFYVEFFVGICMFLIVAWLLLFRLAEVKECWKIHARIRFYFCLTLIATAVNLGIGICGLVNTLSD 852
            M+++CW    LEGF+KALK++E ++ NM A+TNLAIC+NLALVV+SHRT++RVKSVSTP L+L+FLAIS+  A   VP    T+V+GT+F+V N D    D+I +S   +EF VGICMF+IV+WL+ FR+  +KECWKIHARIR+YF LTLIATAVNL +GI GL     D
Sbjct:    1 MISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVKSVSTPALVLLFLAISVIAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFVIVSWLMAFRMQAIKECWKIHARIRYYFVLTLIATAVNLALGISGLSYVFRD 171
[Close]
BLAST of mRNA_S-firma_F_contig1086.1147.1 vs. uniprot
Match: D8LNM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM5_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 8.440e-49
Identity = 95/176 (53.98%), Postives = 129/176 (73.30%), Query Frame = 1 
Query:  328 VEDAMVTLCWTTSNLEGFVKALKFIELSAFNMFAVTNLAICVNLALVVSSHRTMTR-VKSVSTPPLLLVFLAISMALATPIVPLGQRTIVAGTSFYVVNNDVEGNDFIQISFFYVEFFVGICMFLIVAWLLLFRLAEVKECWKIHARIRFYFCLTLIATAVNLGIGICGLVNTLSD 852
            ++  M+++CWT +NL   +K  KF+EL++ NM A+TNLAIC+NLALVV SH      V S+S+P L++V L IS+  A    P  +  I++GT F+    +  G+D+I IS FY+EFFVGICMF+IVAWLLLFR+ E+KECWK+HARIR+YF LTLIAT VNL +GICG++  + D
Sbjct:    1 MQATMISVCWTGANLIKLIKTFKFLELASVNMLAMTNLAICMNLALVVMSHGDQQPGVNSLSSPLLIVVSLVISIGAAAAAAPFWEFIILSGTGFFPETENQRGSDWITISRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKMHARIRYYFGLTLIATGVNLILGICGVIYLIGD 176
[Close]
BLAST of mRNA_S-firma_F_contig1086.1147.1 vs. uniprot
Match: A0A6H5KRY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY2_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 6.950e-45
Identity = 91/172 (52.91%), Postives = 121/172 (70.35%), Query Frame = 1 
Query:  340 MVTLCWTTSNLEGFVKALKFIELSAFNMFAVTNLAICVNLALVVSSHRTMTRVKSVSTPPLLLVFLAISMALATPIVPLGQRTIVAGTSFYVVNNDVEGNDFIQISFFYVEFFVGICMFLIVAWLLLFRLAEVKECWKIHARIRFYFCLTLIATAVNLGIGICGLVNTLSDG 855
            M+++CW   NL   +K LKF+EL++ NM AVTNLAICVNLALVV SHRT++RV S+S+P ++ + L +++  A   VP  +  I+ GT F   + D +  D+  +S F  EF VGICM  IVAWLLLFR+ E+KECWK+H RIR+YF LTLIAT VNL +GI G V  + +G
Sbjct:    1 MISVCWAGGNLSNLIKFLKFLELASANMLAVTNLAICVNLALVVMSHRTLSRVSSLSSPRVIWLSLVLAVGGAAAAVPSWKTIILTGTYFSPYSEDKQDLDWSVVSRFLFEFIVGICMIAIVAWLLLFRMKEIKECWKVHTRIRYYFGLTLIATGVNLVLGIFGTVYIVGEG 172
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1086.1147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FTK5_ECTSI9.100e-10656.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTK4_ECTSI5.710e-7659.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNM4_ECTSI2.030e-7353.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWL8_9PHAE1.260e-7053.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNN1_ECTSI8.060e-6659.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K8K6_9PHAE1.280e-6549.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNP0_ECTSI2.720e-5951.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LNN2_ECTSI4.050e-5559.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNM5_ECTSI8.440e-4953.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRY2_9PHAE6.950e-4552.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1086contigS-firma_F_contig1086:4656..10401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size3116
Cds size975
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.550878-UTR-S-firma_F_contig1086:4655..47871622815629.550878-UTR-S-firma_F_contig1086:4655..4787Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1086 4656..4787 +
1696949465.1993072-UTR-S-firma_F_contig1086:4655..47871696949465.1993072-UTR-S-firma_F_contig1086:4655..4787Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1086 4656..4787 +
1622815629.616234-UTR-S-firma_F_contig1086:8392..104011622815629.616234-UTR-S-firma_F_contig1086:8392..10401Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1086 8393..10401 +
1696949465.2516215-UTR-S-firma_F_contig1086:8392..104011696949465.2516215-UTR-S-firma_F_contig1086:8392..10401Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1086 8393..10401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.5644743-CDS-S-firma_F_contig1086:4787..49541622815629.5644743-CDS-S-firma_F_contig1086:4787..4954Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1086 4788..4954 +
1696949465.2084298-CDS-S-firma_F_contig1086:4787..49541696949465.2084298-CDS-S-firma_F_contig1086:4787..4954Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1086 4788..4954 +
1622815629.5753162-CDS-S-firma_F_contig1086:5524..56991622815629.5753162-CDS-S-firma_F_contig1086:5524..5699Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1086 5525..5699 +
1696949465.2169237-CDS-S-firma_F_contig1086:5524..56991696949465.2169237-CDS-S-firma_F_contig1086:5524..5699Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1086 5525..5699 +
1622815629.586075-CDS-S-firma_F_contig1086:6745..69011622815629.586075-CDS-S-firma_F_contig1086:6745..6901Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1086 6746..6901 +
1696949465.225068-CDS-S-firma_F_contig1086:6745..69011696949465.225068-CDS-S-firma_F_contig1086:6745..6901Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1086 6746..6901 +
1622815629.5960631-CDS-S-firma_F_contig1086:7320..75501622815629.5960631-CDS-S-firma_F_contig1086:7320..7550Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1086 7321..7550 +
1696949465.233426-CDS-S-firma_F_contig1086:7320..75501696949465.233426-CDS-S-firma_F_contig1086:7320..7550Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1086 7321..7550 +
1622815629.606209-CDS-S-firma_F_contig1086:8145..83921622815629.606209-CDS-S-firma_F_contig1086:8145..8392Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1086 8146..8392 +
1696949465.242145-CDS-S-firma_F_contig1086:8145..83921696949465.242145-CDS-S-firma_F_contig1086:8145..8392Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1086 8146..8392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1086.1147.1prot_S-firma_F_contig1086.1147.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1086 4788..8392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1086.1147.1

>prot_S-firma_F_contig1086.1147.1 ID=prot_S-firma_F_contig1086.1147.1|Name=mRNA_S-firma_F_contig1086.1147.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=325bp
MASCDSDLTAVGIGEGEELMTVVRIVTTLISLTVTSAWFSWRKVKRLSLF
FAHWLAGLVAQLGYLVEDAMVTLCWTTSNLEGFVKALKFIELSAFNMFAV
TNLAICVNLALVVSSHRTMTRVKSVSTPPLLLVFLAISMALATPIVPLGQ
RTIVAGTSFYVVNNDVEGNDFIQISFFYVEFFVGICMFLIVAWLLLFRLA
EVKECWKIHARIRFYFCLTLIATAVNLGIGICGLVNTLSDGYVIPLIIWS
WVFRYIHVALDTIVLYGVLRERSIDERGDGNGTGSGSAGFSNGSSGRRTS
KRGLPRGSGASNNTSKPVAVTPMV*
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mRNA from alignment at S-firma_F_contig1086:4656..10401+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1086.1147.1 ID=mRNA_S-firma_F_contig1086.1147.1|Name=mRNA_S-firma_F_contig1086.1147.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5746bp|location=Sequence derived from alignment at S-firma_F_contig1086:4656..10401+ (Sphaerotrichia firma ET2_F female)
AACTGGCAACTGGCTGTGGTGCGTGCTACTCTTCTTCCTCCGACACTCGC
ACATCTCGCACGCGGCTTTTATCGCTGCTGATGCCCTTGCTTGGTCTCTG
GTCGACAGCTATCTGCGGTGTCGCTAGTGGCCATGGCATCGTGTGATTCC
GACCTCACGGCGGTGGGCATTGGAGAAGGCGAAGAGCTCATGACGGTTGT
CCGAATCGTCACCACCCTCATCTCTCTCACGGTCACGTCCGCCTGGTTTA
GCTGGAGGAAGGTCAAGAGGCTGAGCTTGTTCTTCGCGCACTGGCTGGCG
TGAGTGGGTCTGTTCTGACATCTATCTACTACAGTACGCTCATTTGGAAA
CAGCAGCAGTAGACTTTGTGGCGTAGCTGTGAACATATTAAAAAAACCCG
AGGAGGCACATGACGTAGATACAGAGTAGTCTACACCACAATCTACAGCA
GTAGCCGGGAGCGATGGTCTACATACATCACTGCACGTGTTTTGGACGAA
GATTCGCCGGTTCCCCGGGGTGGTTCTAGGTTGTTGCAGATGCTCTACTG
CACCTGGTGCTCCTTTAGATCGGGCCCGCTCCTATGTTTCGTTGTGCACA
ACTTGGCCGACACCAGATGGTGCAACGCACAACTTGGTGAGGGAACGACG
TGGAACATGCCGCTTTCCTCTTCCCGAACCCCGAACCCCGAACGCAGCAG
TTTGTGATTGTTTGCCGCCATCATTCGCTCCGCCCACTGCAAGGCTTTGG
TATAAATGTTATGTATGTACTCACTCGCGTCCCATCCTGCCCGTGACGGC
CGCAACGACGGCGGAACCGGTTGTATATCTTGCTGGGCTGCCCCTGGTTG
CTGCTGCTGCTGGGCACAGAGGGCTTGTGGCGCAGCTCGGCTACCTCGTG
GAGGATGCGATGGTCACTCTCTGCTGGACAACGAGTAACTTGGAGGGCTT
TGTCAAGGCGTTGAAGTTTATCGAGCTGTCCGCCTTCAACATGTTCGCCG
TGACGAACCTCGCCATCTGCGTCAACCTCGCCCTCGTCGTCTCGGTAAGT
AGGCGGTGAAAAAATTCGCCGTTGTCCCGGGAAGGTCCCAAATTAGAAAT
CATTCAATGATGGGGTGGGTGGTGCCCTTGTATAAAGTTGTACACACCAA
ACTTTGACCTGCAGGGACGGAACAGCTACTACTCCGTACGAGACGTGCTT
GCCTGGAACGTACGCTCAGGCGAGCATCGAACCTTGGTCACCGTTTAATT
CCTGTTCAACATGCACCGCACGCCCCTTTCGTTTGGTGACCTTCCTCCCA
CAGCCAACGTAGATGAAGCAGAGAGAAAGAGAGGGCCCGGATCCCCACGG
ATAGACATTACCAGGTCCAGCGGACATTTCCAGGTCCAGCTTGCATAGGA
TGCGCGTGACGCAGGACCACAGATAGCGCCCTGATTACCGGGGCATCACT
TTTATGACTTATATCCTGAGCACGTATGATAGCATTTTACTTGTGGCCTG
GACATTTAGCACTTCCGACCTGTACCTGATAGTAGTAGCTCGCGGAGAAT
CCTATCTGACCGAGTCCGAGTAGTGCTATATACCTTTGGTGTAACTTTCG
CGCGTGTGTGCCAGTGTTCCACAGTCAGTGTTCCGTTCGTGTCAAATCAG
TCTCTGAGCCAGGAGGGCGTCTGCAACCGAAGCAAGGGGCCACACAGACC
CAAACACAACACGTACCCAAACTCTGCAAAATGTAATAGCGGATGTCTCC
CACAAGCCGCCCGTAACATAGACGCAAGCGTTCTCCCCAAGCTTGTTTTC
CTTGCAGTGGAAATAGGGCTCTAACGCTTGGGGTACGTCCCATACCAAAA
CGCTCTGGCGTTCTTCAAGTGTATGATGTACGTGAGAATTGAATGTTCAC
CGGCACACGCAAACACAGTGGAACGGTAGTAAGTTGTGGCCGACTCTTCG
TAGGCAACACCGCGAGTCAGCAACGCACCGATCAATATTCATCTCCGCCG
TTTGCCCTCTCTTGCTTTCCGCTGCGTTGCTCGTGTGGTCATGTTCCCTA
CTTATCCGGATCGCCGTTTTGGCTCCTGGGTGGCATGCAGTCTCACCGAA
CGATGACACGTGTCAAAAGTGTCAGCACACCCCCGCTGCTCCTGGTGTTT
CTGGCCATCTCCATGGCACTGGCAACCCCTATCGTCCCTTTGGGCCAGAG
AACTATTGTCGCGGGAACCAGCTTTTACGTGGTCAACAATGATGTGGTAT
GGATGCATTCCTTTTGCACCTTGTAGTGTGCCGTTTCGTGGTGTTTTTCC
TACATGGCTGTGCTGTTGAGCGCATCTCACCCCTCGTATACGAACTTTTC
CTTTCTGTCGGGGGCAGATACATATGAAGAAGCGTGGAGTTTTCGATGGT
TCTGATGCGAACTTCGGCGCTCGCTCGACGATACCAGCAAGCACAACGGA
TGTTCTGTACATGTGTGCTGCTCTTGATTGTCAGCTTCTGCAACCCTTGT
TTACGTACATGACAGCCGCTATTGTGTGGGATGAGCAGCCAACGCAATTT
CACACTTGTGCTGGAACTTGGAGCATTCGCCACCATCGTGGATAAATATG
GGTTTGTACTTCCCCCCGGTACTCTATGATACAACGGTACGGCTTTCGCC
TTGTTTCACGCGCAGGAGGGGAACGATTTCATCCAGATCTCCTTCTTCTA
CGTCGAGTTCTTCGTCGGGATCTGCATGTTTCTCATCGTGGCCTGGCTGC
TGCTCTTCCGGCTGGCGGAGGTGAAGGAGTGCTGGAAGATACACGCCCGC
ATCCGCTTCTACTTTTGCCTCACCCTCATCGCTACCGCCGTCAACCTGGG
CATCGGTATCTGCGGGTTGGTAAACACCCTCTCCGATGGATACGTGTGAG
TGCAGATACGGTTAGTGCTGTGGTAGACAATACGTACTACACTACACGTT
TCGGCTGCGACCGGCGATAAGACACGCAAGCAACAAAGGCTAAATCGGGG
TACTACTGCATGCCTGCACCATGGTAGACCTGGTTGGTCGCGTGGTGATG
GTTTCCATCTCCGGGGGCGCGGATTATTCTGCACGTAAGTGTTTTTGCTC
TCGTGGTGGGTAATGTAGTGCTGTAATTCATTGGGCTTATTGCTCAAACG
CTACTACTGGCTCTGCCGAACTTTGTTTGGCCTCCGTGTGCGGTCCGAGG
TGAAAAGGCGACACTAAACCAGCACTTCAAAGCGCCACTACACCACTACA
CCAACAAAGCAAGGTTGTCCGCTTATGTGGACCTGCGGCGATCGAAGCTT
TGTTCTTTCTGCTCCTGCCTGTGCTACCGTACCTAACACGATCACCCTTC
GGCGTGTACACGAAGCGCCGAGCAGACATTTCGCCGGGATTATGTAAAAC
TCAGTCCTTCTAACTTGCTTTCGCCCCCGCGCCCCTCGTGTTCCGGCGCC
CGCCGTGCGCCATCATAATGGCGACGACCATGACTGGTAGAATTCCTCTA
ATCATCTGGAGCTGGGTCTTCCGGTACATCCACGTCGCCCTGGATACCAT
CGTCCTCTACGGCGTTCTTCGAGAGAGGAGCATAGACGAACGCGGCGACG
GCAACGGCACGGGGTCGGGCTCGGCTGGGTTCTCGAACGGGTCATCTGGA
CGACGCACGTCTAAGCGCGGCCTGCCCAGAGGGTCCGGAGCGTCCAACAA
CACGAGCAAGCCCGTCGCAGTCACCCCCATGGTTTAAAGTCGCCGCTCAT
ATGCACCGCCCGCCCGGAAAAAGATGTGCACTGGTTTCTACTGTACGTGG
GCCATTCGCCTAGCACTGCAAGTGTTTGTGTGAACCCCACGGGCGGTTTG
ATCTGGTGTATGTATCGAGATTGGCTGAAAACCAAGTGCTCATAGGGAGT
CGTGTGAGGAAGCAGCCTTAGTGGGCAAGAAAAATTGGCGAATGAAATGG
TGAGCGTGTACTCGCATCGTGGAACGCTGTGCGCGTGCAGGCGTGTGTGC
ATGTTTTGTTTGTTTTTTGGATGGATGTGTGAAGTGTTGGGTGTTGAAGG
TTTTGGGCGTACGTCCAAGGTCTGACAGTGCGCGAGAGGATTTGTTGAAC
ACACCACCACATATTTATTTTGGTCTTGTCTTCACGAGGGTACAGCAGCA
GTTTAGTCGGGTAGGCACGTTGAAGTTTAGGGGGGGGGTTCATGTAGCAG
GCGGAATCGTCGGTTGTACTGTAAGAAGATTCGAAGCAAACGTGCGAGCG
AACAACGTCGATTGGCACACCGTACCAACAAAAATATTTTGGTCCCTGTC
ATGTTTTATGCCAGGTGTATGGTCTGGGTGAGAGACGGTACCCACCTGTG
ACAGTCCGCTACTGGGTGCTCTACTTGTCGGTTCTTGGAATAGTGGTTGT
CTTGGCGCTGTGTTTTCATGCCATTGTCTTGTTTGTGGATTTTTTGCTCG
GTTGGATGGTATCCGTGTCGTTCCATGTCATACCATCCCTCCCTCTTGTT
TTGGCATGAAGCCACACAGTCCAACTTTCACGCTCACTCTGTGTTGGAGC
GGATGCGTCCGGCGAGTACGGGTAAAGAGGGTGATTTGTGCTCGAAAGTG
AGTGGGTGCTTGTACATACCGATTTCTTCGTACTCTCCGTGTATTGTCTG
TGTAGCCCATGGCCAGTTTTGTCAACCGTTTACATCGTAGCACCCCTTTT
TTTGTCCCCCTGTGGCAGTAGTGAGTCCTCCCCCCCATCATCGTGCATGT
TTTCGAGATTTCCCCTTTCCGTTTTTGTTGTTCCCCGGATTAAGAATTTG
TGGAGCATCCCCCCCCTGGCGGTATTCGATTTCCCCTTCATTTGTGCTGC
GTTTTATTTTATTTTATTTGTTGACGACGGCGCTTGCGAGGGTCTTAGGG
CCGAACCTTCCACCTGCATCCTGCAGTACGAGCGTGTTGTAGGTTGCAAC
GAGCGAATGACATGCTGCCGTTACAACTAGCGGGGTAAGACGATGCTGGG
TACACTCGTTCCGAAGACGAGGTTTGTGAGAGAACAGTTGTGTGCGGCGA
CTTGGGTTTTTTACTCGTTCCCCCCCGTGAGGGATTTTTCCCTTGTTTCG
TTCAGAGTTGCCGGGTTGTATGTCGTCAGCAGAAAAAAATAACACCCGCC
GCGGGAGGAACTTCCAGGGTGTTACGGTAGTAGCGTTGGACTAGTATTGT
GATATTTTTTACCTTGTGCTATTGTGTGCATACGGCGGTAAACGACCGAT
AGTAGCCTACAGCAAAAACTAGAGAAAGCAAATTAGTGAAGCATTTAATA
TTTTCTTCGTAAGAAGTACCATGCGTCTCGCAGCACATTTTTGCGCAGAA
AAAGTTGGACATCTTTGTTGAAAATGGAGTCGAGTCGATAGGCGGGGGGC
AGCGGTTGCACTCGTACCCCCTCTCCTTGCTTTGGGCTCCCTTCGTTGTG
TATTGCTCGGCTGGGTTGTGTTGTTTGATACCATCGCATAGTATAATGCA
CCAGAAACAGCAGCAGTATTTAGTGGCAATGTGGACACCTGGCCGTCTTT
TTACTTCGCGTGAGACTCGCGGACACTTGTCGACAGCACGTTAGTTATTG
CTTACGAGGCTTTTCTTGATAATCGCCTCGAAGCCAAGTAGTTTCGGGAA
CAGCCTCTAGTGGGCGTTTGGAGCGGTTTCTTCTGCTTGGCTGGCTGCCT
GCCGCGATACATGCGAGGTGGCCACAACATAACGACTTCTTCACCG
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Coding sequence (CDS) from alignment at S-firma_F_contig1086:4656..10401+

>mRNA_S-firma_F_contig1086.1147.1 ID=mRNA_S-firma_F_contig1086.1147.1|Name=mRNA_S-firma_F_contig1086.1147.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1950bp|location=Sequence derived from alignment at S-firma_F_contig1086:4656..10401+ (Sphaerotrichia firma ET2_F female)
ATGGCATCGTGTGATTCCGACCTCACGGCGGTGGGCATTGGAGAAGGCGA
AGAGCTCATGACGGTTGTCCGAATCGTCACCACCCTCATCTCTCTCACGG
TCACGTCCGCCTGGTTTAGCTGGAGGAAGGTCAAGAGGCTGAGCTTGTTC
TTCGCGCACTGGCTGGCATGGCATCGTGTGATTCCGACCTCACGGCGGTG
GGCATTGGAGAAGGCGAAGAGCTCATGACGGTTGTCCGAATCGTCACCAC
CCTCATCTCTCTCACGGTCACGTCCGCCTGGTTTAGCTGGAGGAAGGTCA
AGAGGCTGAGCTTGTTCTTCGCGCACTGGCTGGCAGGGCTTGTGGCGCAG
CTCGGCTACCTCGTGGAGGATGCGATGGTCACTCTCTGCTGGACAACGAG
TAACTTGGAGGGCTTTGTCAAGGCGTTGAAGTTTATCGAGCTGTCCGCCT
TCAACATGTTCGCCGTGACGAACCTCGCCATCTGCGTCAACCTCGCCCTC
GTCGTCTCGAGGGCTTGTGGCGCAGCTCGGCTACCTCGTGGAGGATGCGA
TGGTCACTCTCTGCTGGACAACGAGTAACTTGGAGGGCTTTGTCAAGGCG
TTGAAGTTTATCGAGCTGTCCGCCTTCAACATGTTCGCCGTGACGAACCT
CGCCATCTGCGTCAACCTCGCCCTCGTCGTCTCGTCTCACCGAACGATGA
CACGTGTCAAAAGTGTCAGCACACCCCCGCTGCTCCTGGTGTTTCTGGCC
ATCTCCATGGCACTGGCAACCCCTATCGTCCCTTTGGGCCAGAGAACTAT
TGTCGCGGGAACCAGCTTTTACGTGGTCAACAATGATGTGTCTCACCGAA
CGATGACACGTGTCAAAAGTGTCAGCACACCCCCGCTGCTCCTGGTGTTT
CTGGCCATCTCCATGGCACTGGCAACCCCTATCGTCCCTTTGGGCCAGAG
AACTATTGTCGCGGGAACCAGCTTTTACGTGGTCAACAATGATGTGGAGG
GGAACGATTTCATCCAGATCTCCTTCTTCTACGTCGAGTTCTTCGTCGGG
ATCTGCATGTTTCTCATCGTGGCCTGGCTGCTGCTCTTCCGGCTGGCGGA
GGTGAAGGAGTGCTGGAAGATACACGCCCGCATCCGCTTCTACTTTTGCC
TCACCCTCATCGCTACCGCCGTCAACCTGGGCATCGGTATCTGCGGGTTG
GTAAACACCCTCTCCGATGGATACGTGAGGGGAACGATTTCATCCAGATC
TCCTTCTTCTACGTCGAGTTCTTCGTCGGGATCTGCATGTTTCTCATCGT
GGCCTGGCTGCTGCTCTTCCGGCTGGCGGAGGTGAAGGAGTGCTGGAAGA
TACACGCCCGCATCCGCTTCTACTTTTGCCTCACCCTCATCGCTACCGCC
GTCAACCTGGGCATCGGTATCTGCGGGTTGGTAAACACCCTCTCCGATGG
ATACGTAATTCCTCTAATCATCTGGAGCTGGGTCTTCCGGTACATCCACG
TCGCCCTGGATACCATCGTCCTCTACGGCGTTCTTCGAGAGAGGAGCATA
GACGAACGCGGCGACGGCAACGGCACGGGGTCGGGCTCGGCTGGGTTCTC
GAACGGGTCATCTGGACGACGCACGTCTAAGCGCGGCCTGCCCAGAGGGT
CCGGAGCGTCCAACAACACGAGCAAGCCCGTCGCAGTCACCCCCATGGTT
TAAAATTCCTCTAATCATCTGGAGCTGGGTCTTCCGGTACATCCACGTCG
CCCTGGATACCATCGTCCTCTACGGCGTTCTTCGAGAGAGGAGCATAGAC
GAACGCGGCGACGGCAACGGCACGGGGTCGGGCTCGGCTGGGTTCTCGAA
CGGGTCATCTGGACGACGCACGTCTAAGCGCGGCCTGCCCAGAGGGTCCG
GAGCGTCCAACAACACGAGCAAGCCCGTCGCAGTCACCCCCATGGTTTAA
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