mRNA_S-firma_F_contig1085.1140.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1085.1140.1 vs. uniprot
Match: A0A6H5KSF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF8_9PHAE) HSP 1 Score: 446 bits (1146), Expect = 5.820e-126 Identity = 284/467 (60.81%), Postives = 337/467 (72.16%), Query Frame = 1
Query: 1 QVIVSVKIDSTRGAVTALGSRGLPPEWSPRDPDFVPEDGSDLSSMVLFLDLATGEVPQTTYERKLPESLGTAVAVDGETGDAYVAGFIASSSDNDSGDQIVVHKVLAETGAKGWSYAATSEGVSVGRALAIDLVGETN--IIVAGTTSGSRAYPSAGKEDIFSLLLSTEDGSETCYYQVGTDSSDVVTGISVDKSGTSGFPDVAIGGFTEGSLAAPKAGETDIFAIGVNFALFCPDIGRSTSNAAEAEASGSFAAGAVSILAGFAIVGAVVSTVIAPTAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTASACPXXXXXXXXALVTILSAGHGAGGLSGSGQPAPPGEVTFRSPSASIGMLVMSQLQFLALLSLVPSVHDSTSYLSSFVENLRWVNLWLPLPSSATPESCAVVDAEALMDNDVFFGNTALVFGILVAIFMVHVAIISAVEAYWLAQARGS 1395
+ IVS++++ G VTALG RGLP +WSPRD DFVPED +L S V L+L TG++ + + E E L AVAVD T DAYVA F S+ +N D++VV+KV G WSY ATSEGV GRALAID VG+++ +IVAGTT G+ A+ S G D F LLL ++GSE CYYQ GT +DVVTGI+VD S T+ + DV +GG+TEGSLA AGE D+FAIGV A CPD+ RSTS+AAE E GSFAAG +SILAG A+ GAVVST++AP AAV XXXXXXXXXXXXXXXXXXXXXX TAS CP ALVTILSAGHGAGGL G+ PGE +FRSPSASIG+L+M+QLQFLA LSLV SVHDS S LSSFVENLRWVNLWLP+PSS +P SC + DA+ L+D VFFGNT LV IL+ IF++HV +SAVEAYWLAQ R +
Sbjct: 1469 EAIVSLRVNPGTGVVTALGMRGLPADWSPRDTDFVPEDDDELHSSVFSLELETGDLFRNSTEE---EGLAAAVAVDEGTDDAYVASFTRSADNN---DRVVVYKVNVSNGGMMWSYQATSEGVFEGRALAIDTVGDSDEMVIVAGTTGGTSAHGSYGSTDAFVLLLGADNGSEICYYQAGTSFADVVTGITVDSSSTA-YSDVTLGGYTEGSLAGLNAGEVDMFAIGVRLASLCPDVSRSTSSAAEIE--GSFAAGTISILAGVAVAGAVVSTIVAPGAAVASXXXXXXXXXXXXXXXXXXXXXX--------TTTASTCPKAGAAGVGALVTILSAGHGAGGLVGNTPT--PGEASFRSPSASIGLLMMTQLQFLATLSLVQSVHDSASSLSSFVENLRWVNLWLPMPSSLSPNSCEIADAQDLIDEGVFFGNTTLVLAILLGIFLIHVGAVSAVEAYWLAQDRAA 1916
BLAST of mRNA_S-firma_F_contig1085.1140.1 vs. uniprot
Match: D7G8U8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U8_ECTSI) HSP 1 Score: 367 bits (943), Expect = 2.270e-100 Identity = 226/463 (48.81%), Postives = 277/463 (59.83%), Query Frame = 1
Query: 1 QVIVSVKIDSTRGAVTALGSRGLPPEWSPRDPDFVPEDGSDLSSMVLFLDLATGEVPQTTYERKLPESLGTAVAVDGETGDAYVAGFIASSSDNDSGDQIVVHKVLAETGAKGWSYAATSEGVSVGRALAIDLVGETN--IIVAGTTSGSRAYPSAGKEDIFSLLLSTEDGSETCYYQVGTDSSDVVTGISVDKSGTSGFPDVAIGGFTEGSLAAPKAGETDIFAIGVNFALFCPDIGRSTSNAAEAEASGSFAAGAVSILAGFAIVGAVVSTVIAPTAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTASACPXXXXXXXXALVTILSAGHGAGGLSGSGQPAPPGEVTFRSPSASIGMLVMSQLQFLALLSLVPSVHDSTSYLSSFVENLRWVNLWLPLPSSATPESCAVVDAEALMDNDVFFGNTALVFGILVAIFMVHVAIISAVEAYWLAQ 1383
+ IVS++++S G VTALG+RGLP +W+PRD DFVPED ++L S V L L TG++ +++ E E L AVAVD +T +YVA F S+ D+ D++VV+KV +G WSY ATSEGV GRALAID VG+++ +IVAGTT G+ A+ S G D F L+L +DGSE CYYQ GT +DVVTGISVD S T+ + V +GG+TEGSLA AG D+FAIGV A CPD+ STS+AAE EA GHGAGGL GS PA PGE +FRSPSASIG L+M QLQFLA LSLV SVHDS S+LSSFVENLRWVNLWLP+PSS TP+SC + DA+ L+D VFFGNT LV IL+ IF++HV +SAVEAYWLAQ
Sbjct: 1365 EAIVSLRVNSGTGVVTALGTRGLPADWTPRDTDFVPEDDAELYSSVFSLGLETGDLFRSSTEE---EGLAAAVAVDEDTDYSYVASFTRSA---DNYDRVVVYKVDVSSGNTMWSYQATSEGVFEGRALAIDTVGDSDGIVIVAGTTGGTSAHGSYGSTDAFVLILGADDGSEICYYQTGTSFADVVTGISVDSSSTA-YSQVTLGGYTEGSLAGLNAGGADMFAIGVRLASLCPDVSSSTSSAAEIEA----------------------------------------------------------------------------------------GHGAGGLVGS-TPA-PGEASFRSPSASIGFLMMMQLQFLATLSLVQSVHDSASFLSSFVENLRWVNLWLPMPSSLTPDSCEIADAQDLIDEGVFFGNTTLVLAILLGIFLIHVGAVSAVEAYWLAQ 1730
BLAST of mRNA_S-firma_F_contig1085.1140.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI) HSP 1 Score: 287 bits (735), Expect = 2.200e-75 Identity = 175/408 (42.89%), Postives = 230/408 (56.37%), Query Frame = 3
Query: 2640 PILTCRRRSRSMWLHFPHLELLFLFWAFEGAVAAQVSALKDAECPRVFWLALAALLLFPVLMVVMVWRTIAVRVRPNDLLVFRLHGSDGEEGDDELLSQEDGNEQESPQPQAEDGGVPPTADGLPEGETGRIKRGLWQKFASAWFENGMLFSWADTGSWESVATDNEEVKREADWFRIGFEPLFVDLSKMGCFYLIFVLFKWFGLACVGVLVEDSVKQLLYMFILHAVDLAVLVRTSPFANRVINVMNVMLTAVDCTCAVLMLMAAGFDEDETAT--FNDIAFILQLVALIALVIPVYIDTGVSLTILVTEKLSQSCAARDEDALTQTLDPQGVKDQQDRE---YVRHFARRSWTRYWCPMVRHNILAAANDIREGIRAPGTSTHRHLRLQAEKKLAKGTPARAGGSG 3848
P+ CR SRS WLHFPH+EL+FLF+A+EGAVA+QVSAL++A CP V A AL+ +P+LM V V RT VRVRPN L+VF +D + GD A EG+ R L K + W E+ LF+WA+ G+WE+ TDNE +RE WFRIGFEPLFVD +K G +++ F L +W L C+G L+++SV QL LH + +LV PFAN VIN M L +D C L+ ++A E A + + +LQL AL AL+IP+YIDT + L + +L +S T PQ V+ + ++E +VRHF RRSW R WC M+ NI A A+D REGIR PGTS AE +LA T ARA +G
Sbjct: 1022 PVAECREHSRSAWLHFPHVELVFLFFAYEGAVASQVSALREAGCPPVMIAAGLALVFYPILMFVAVLRTFFVRVRPNTLIVFTPKEADDDTGD---------------------------AGDAEEGQRARSASFL-SKVRAGWEEDHSLFAWANKGTWETAETDNEGTRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFANSVINAMGAGLVGIDAVCMALLAVSASRWEGTAAAGKVDSVVMLLQLFALCALIIPIYIDTSLILIGAIRSRLQKST----------TTTPQHVRTEAEKEEDLFVRHFIRRSWPRTWCTMLGKNIFACASDTREGIRPPGTS-------MAEDRLATST-ARAARTG 1383
BLAST of mRNA_S-firma_F_contig1085.1140.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI) HSP 1 Score: 273 bits (698), Expect = 1.580e-70 Identity = 155/381 (40.68%), Postives = 222/381 (58.27%), Query Frame = 3
Query: 2640 PILTCRRRSRSMWLHFPHLELLFLFWAFEGAVAAQVSALKDAECPRVFWLALAALLLFPVLMVVMVWRTIAVRVRPNDLLVFRLHGSDGEEGDDELLSQEDGNEQESPQPQAEDGGVPPTADGLPEGETGRIKRGLWQKFASAWFENGMLFSWADTGSWESVATDNEEVKREADWFRIGFEPLFVDLSKMGCFYLIFVLFKWFGLACVGVLVEDSVKQLLYMFILHAVDLAVLVRTSPFANRVINVMNVMLTAVDCTCAVLMLMAAGFDE--DETATFNDIAFILQLVALIALVIPVYIDTGVSLTILVTEKLSQSCAARDEDALTQTLDPQGVKDQQDREYVRHFARRSWTRYWCPMVRHNILAAANDIREGIRAPGTST 3776
P+ TCR S S WLHFPH+EL+FLF+AFEGAVA+ SA++++ECP +F+ A+AA++L+P+LM V V+RT+ VRVRPN LL+F+ + DG GD P A GL +F S+W EN LFSWAD G WE+V T + +V RE DWFRIGFEP+FVD +K G ++++ L +W A VGV++E+SV QL+ LH+V +L+ PFAN VIN + +TA+D + +A + E + A N +LQL++L ALVIPVY+D + + ++ + AL +T ++++ R Y+R + RR W WC M+RHN+ A A D EG+R P +T
Sbjct: 1381 PVATCREHSTSAWLHFPHVELVFLFFAFEGAVASFASAIRNSECPEIFYTAIAAMVLYPLLMFVTVFRTLLVRVRPNVLLIFKTYAEDGTNGD-----------------------APSRAGGL------------LSRFKSSWAENYSLFSWADKGQWETVQTPDRQVSREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWAAFAFVGVMIENSVVQLVLFCGLHSVMFFILMFLKPFANSVINNIEACVTAIDAISMGVFAASALWWEGTNRAAHLNTSVVVLQLLSLFALVIPVYLDAVTIVMGAIRNRIRK--------ALGKTGHELTDEEREARHYIRSYTRRQWCGTWCTMLRHNVFACARDTSEGVRKPRFTT 1718
BLAST of mRNA_S-firma_F_contig1085.1140.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE) HSP 1 Score: 267 bits (683), Expect = 1.790e-68 Identity = 151/377 (40.05%), Postives = 218/377 (57.82%), Query Frame = 3
Query: 2640 PILTCRRRSRSMWLHFPHLELLFLFWAFEGAVAAQVSALKDAECPRVFWLALAALLLFPVLMVVMVWRTIAVRVRPNDLLVFRLHGSDGEEGDDELLSQEDGNEQESPQPQAEDGGVPPTADGLPEGETGRIKRGLWQKFASAWFENGMLFSWADTGSWESVATDNEEVKREADWFRIGFEPLFVDLSKMGCFYLIFVLFKWFGLACVGVLVEDSVKQLLYMFILHAVDLAVLVRTSPFANRVINVMNVMLTAVDCTCAVLMLMAA-GFDEDETAT-FNDIAFILQLVALIALVIPVYIDTGVSLTILVTEKLSQSCAARDEDALTQTLDPQGVKDQQDREYVRHFARRSWTRYWCPMVRHNILAAANDIREGIRAP 3764
P+ CR S S WLHFPH+EL+FLF+AFEGAVA+ SA++++ECP +F+ A+AA++L+P+LM V RT+ VRVRP++LL+F+ + DG G+ P G G + R F S+W EN LFSWAD G WE+V T N + RE DWFRIGFEP+FVD +K G ++++ L +W +A VGV++++S QLL L + +LV PFAN VIN + + A+D C L+ +AA ++ AT N +LQ+V+L ALVIPVY+D + + +++ + AL +T + + R+Y+R F RR W WC M+RHN+ A A D R+G+R P
Sbjct: 1603 PVAMCREHSTSAWLHFPHVELVFLFFAFEGAVASFASAIRNSECPEMFYTAIAAMVLYPLLMFATVVRTLFVRVRPDELLIFKTYDEDGTNGN------------------------------TPNGRGGFLSR-----FKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSYVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVCTGLLAVAALKWEGTSRATDVNSAVGVLQIVSLCALVIPVYLDAVTIVMGAIRKRIRK--------ALGKTGQQLTGESPEARDYIRTFTRRQWCGTWCAMLRHNVFACARDTRDGVRKP 1936
BLAST of mRNA_S-firma_F_contig1085.1140.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI) HSP 1 Score: 262 bits (669), Expect = 8.330e-67 Identity = 147/377 (38.99%), Postives = 213/377 (56.50%), Query Frame = 3
Query: 2640 PILTCRRRSRSMWLHFPHLELLFLFWAFEGAVAAQVSALKDAECPRVFWLALAALLLFPVLMVVMVWRTIAVRVRPNDLLVFRLHGSDGEEGDDELLSQEDGNEQESPQPQAEDGGVPPTADGLPEGETGRIKRGLWQKFASAWFENGMLFSWADTGSWESVATDNEEVKREADWFRIGFEPLFVDLSKMGCFYLIFVLFKWFGLACVGVLVEDSVKQLLYMFILHAVDLAVLVRTSPFANRVINVMNVMLTAVDCTCAVLMLMAA-GFDEDETAT-FNDIAFILQLVALIALVIPVYIDTGVSLTILVTEKLSQSCAARDEDALTQTLDPQGVKDQQDREYVRHFARRSWTRYWCPMVRHNILAAANDIREGIRAP 3764
P+ TCR S S WLHFPH+EL+FLF+AFEGAVA+ SA++++ECP +F+ A+AA++L+P+LM V RT+ VRVRP++LL+F+ + DG G+ + G F S+W EN LFSWAD G WE+V T N + RE DWFRIGFEP+FVD +K G ++++ L +W +A VGV++++S QLL L + +LV PFAN VIN + + A+D L+ +AA ++ AT N +LQ+V+L ALVIPVY+D + + ++ ++ + L + + R+Y+R F RR W WC M+RHN+ A A D REG+R P
Sbjct: 1562 PVATCREHSTSAWLHFPHVELVFLFFAFEGAVASFASAIRNSECPEMFYTAIAAMVLYPLLMFATVVRTLFVRVRPDELLIFKTYDEDGTNGN-----------------------------------APNCRGGFLSHFKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSNVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVSTGLLAVAALKWEGTSRATDVNSAVGVLQIVSLCALVIPVYLDAVTIVMGAIRNRIRKALGKTGQQQLK-------GESPEARDYIRTFTRRQWCGTWCAMLRHNVFACARDTREGVRKP 1896
BLAST of mRNA_S-firma_F_contig1085.1140.1 vs. uniprot
Match: A0A6H5KV63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV63_9PHAE) HSP 1 Score: 231 bits (588), Expect = 2.880e-61 Identity = 159/437 (36.38%), Postives = 211/437 (48.28%), Query Frame = 3
Query: 2643 ILTCRRRSRSMWLHFPHLELLFLFWAFEGAVAAQVSALKDAECPRVFWLALAALLLFPVLMVVMVWRTIAVRVRPNDLLVFRLHGSDGEEGDDELLSQEDGNEQESPQPQAEDGGVPPTADGLPEGETGRIKRGLWQKFASAWFENGMLFSWADTGSWESVATDNEEVKREADWFRIGFEPLFVDLSKMGCFYLIFVLFK------------------WFGLACVGVLVEDSVKQLLYMFILHAVDLAVLVRTSPFANR--------------------VINVMNVMLTAVDCTCAVLMLMAAGFDEDETAT--FNDIAFILQLVALIALVIPVYIDTGVSLTILVTEKLSQSCAARDEDALTQTLDPQGVKDQQDRE---YVRHFARRSWTRYWCPMVRHNILAAANDIREGIRAPGTSTHRHLRLQAEKKLAKGT 3824
+ CR S+ WLHFPH+EL+FLF+A+EGAVA+QVSAL++A C V A AL+ +P+LM V V RT VRVRPN +VF LS K + W E+ LF+WA+ G+WE+ TDNE ++RE WFRIGFEPLFVD +K G +++ F L + W L C+G L+++SV QL LH + +LV PFANR VIN M L +D C L+ ++A E A + +LQL A AL+IP+YIDT + L + +L Q C T PQ V+ + ++ +VRHF RRSW R WC ++ NI A A+D EGIR PGTST AE +LA T
Sbjct: 164 VAECREHSQFAWLHFPHVELVFLFFAYEGAVASQVSALREAGCLPVMIAAGLALVFYPILMFVAVLRTFFVRVRPNTPIVF--------------LS----------------------------------------KVRAGWEEDHSLFAWANKGTWETAETDNEGIRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEGCLGLGHAVSFLLIYFAQWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFANRLERKTQRVRFLDRLYFRAHSVINAMGAGLVGIDAVCMALLAVSASRWEGTVAAGKVDSAVMLLQLFARCALIIPIYIDTSLMLIEAIRSRL-QKCT---------TTAPQHVRTEAEKVEDLFVRHFIRRSWPRTWCTILGKNIFACASDTSEGIRPPGTST-------AEDRLAATT 529
BLAST of mRNA_S-firma_F_contig1085.1140.1 vs. uniprot
Match: D7G1L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L9_ECTSI) HSP 1 Score: 227 bits (578), Expect = 1.900e-59 Identity = 140/381 (36.75%), Postives = 208/381 (54.59%), Query Frame = 3
Query: 2652 CRRRSRSMWLHFPHLELLFLFWAFEGAVAAQVSALKDAECPRVFWLALAALLLFPVLMVVMVWRTIAVRVRPNDLLVFRLHGSDGEEGDDELLSQEDGNEQESPQPQAEDGGVPPTADGLPEGETGRIKRGLWQKFASAWFENGMLFSWADTGSWESVATDNEEVKREADWFRIGFEPLFVDLSKMGCFYLIFVLFKWFGLACVGVLVEDSVKQLLYMFILHAVDLAVLVRTSPFANRVINVMNVMLTAVDC-TCAVLMLMAAGFDEDETATFNDIAFI-LQLVALIALVIPVYIDTGVSLTILVTEKLSQSCAARDEDALTQTLDPQGVKDQ--QDREYVRHFARRSWTRYWCPMVRHNILAAANDIREGIRAPGTSTHR 3782
CR RS S+WL+FPH+ELLFL +AFEGA+A+Q++ ++ CP VF+ A A+L+++PVLM+++ +RT VRV P+ L+VF+ G + G D G + R K + E+ +F+WA+TG+WE+V T +EE RE D FRIGFEPLFVD +K ++ ++ L + G+AC VLV+DSV QL LH++ +LV PFAN +IN M LT +D + A+L A + A D A + LQLVAL+AL+IP+YID + + EK+ + T D +++ ++R+++R + R+W WC M+ N+LA D G R TS R
Sbjct: 252 CRYRSSSVWLYFPHIELLFLLFAFEGAMASQLATMRGGGCPWVFYSACASLVVYPVLMIILSYRTHRVRVAPDTLIVFKPVGEEENHGTD-----------------------------------GTVPRSFLSKVRTGLKEDHSMFAWANTGAWETVETPDEETVREGDQFRIGFEPLFVDFTKKASWFTVYFLLEMTGIACTAVLVDDSVVQLFLFCGLHSLSFLLLVIFRPFANSIINTMGACLTLIDAASMAMLADTAHRWQRTSRAKRMDTAVVVLQLVALVALIIPMYIDASTVILGAIREKIRSLTKSN-------TCDDGRTEEEAKEERKFIRGYIFRAWGPTWCRMLGSNVLACVADTTRGTRRVNTSAAR 590
BLAST of mRNA_S-firma_F_contig1085.1140.1 vs. uniprot
Match: A0A6H5JR60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR60_9PHAE) HSP 1 Score: 225 bits (574), Expect = 5.540e-58 Identity = 134/382 (35.08%), Postives = 197/382 (51.57%), Query Frame = 3
Query: 2637 HPILTCRRRSRSMWLHFPHLELLFLFWAFEGAVAAQVSALKDAECPRVFWLALAALLLFPVLMVVMVWRTIAVRVRPNDLLVFRLHGSDGEEGDDELLSQEDGNEQESPQPQAEDGGVPPTADGLPEGETGRIKRGLWQKFASAWFENGMLFSWADTGSWESVATDNEEVKREADWFRIGFEPLFVDLSKMGCFYLIFVLFKWFGLACVGVLVEDSVKQLLYMFILHAVDLAVLVRTSPFANRVINVMNVMLTAVDCTCAVLMLMAAGFDE--DETATFNDIAFILQLVALIALVIPVYIDTGVSLTILVTEKLSQSCAARDEDALTQTLDPQGVKDQQDREYVRHFARRSWTRYWCPMVRHNILAAANDIREGIRAPGTST 3776
+P+ TCR S S WLHFPH+EL+F F+AFEGAVA+ SA+++ ECP++F+ A+AA++L P+LM V V+RT+ VRVRPN LL+F+ + G GD P A G +F S+W EN LFSWAD WE+ T + ++ RE DW RIGFEP+FV+ +K G ++++ L +W LA VGV+VE+S+ QL+ L +V +L+ PFAN V N + +TA+D + +A + E D A N +LQL++L ++++ R+Y+R + RR W WC ++ HN+ A A D EG+R P +T
Sbjct: 400 NPVATCREHSTSAWLHFPHVELVFQFFAFEGAVASFASAIRNYECPKIFYTAIAAMVLCPLLMFVTVFRTLLVRVRPNVLLIFKTYAEGGTSGD-----------------------APSRAGGF------------LSRFKSSWEENYSLFSWADKRQWETAQTPDRQISREGDWCRIGFEPVFVEYTKRGTWFIVISLVEWVALALVGVMVENSIVQLVLFCGLPSVIFLILMFLKPFANSVTNNIEACVTAIDAISMGVFAASALWWEGTDRAAHLNTSVVVLQLLSLFD------------------------------------------EEREARDYIRSYTRRQWCGTWCTVLGHNVFACARDTSEGVRKPRFTT 704
BLAST of mRNA_S-firma_F_contig1085.1140.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE) HSP 1 Score: 218 bits (554), Expect = 1.310e-55 Identity = 145/384 (37.76%), Postives = 210/384 (54.69%), Query Frame = 3
Query: 2652 CRRRSRSMWLHFPHLELLFLFWAFEGAVAAQVSALKDAECPRVFWLALAALLLFPVLMVVMVWRTIAVRVRPNDLLVFRLHGSDGEEGDDELLSQEDGNEQESPQPQAEDGGVPPTADGLPEGETGRIKRGLWQKFASAWFENGMLFSWADTGSWESVATDNEEVKREADWFRIGFEPLFVDLSKMGCFYLIFVLFKWFGLACVGVLVEDSVKQLLYMFILHAVDLAVLVRTSPFANRVINVMNVMLTAVDCTCAVLMLMAAG-FDEDETATFNDIA-FILQLVALIALVIPVYIDTGVSLTILVTEKLSQSCAARDEDALTQTLDPQGVKDQQDREYVRHFARRSWTRYWCPMVRHNILAAANDIREGIRAPGTSTHRHLRLQ 3797
CR S+S WLH+PHLEL+FLF+AFEGAV +Q++AL+ A + + A+A L+L+P+LMVVMV RT V V+P+ L+VF ++ E L+ G P T R GL F+ LFSWAD G WE+V T N++ +R+ADWFRIGFEPLF D ++ G +++I+ L + LA + VLV++S Q L +H++ +LV PFAN V+N + M+ D C ++ +AAG F+ TA D A ++Q + + LVIP+Y+DT VS+ ++ + S R+ +A D+ +RE + R W R W MV N+ A D REGIR P T + R RL+
Sbjct: 356 CRELSQSPWLHYPHLELIFLFFAFEGAVTSQMAALRSANSSTILYAAVATLVLYPLLMVVMVARTHRVWVQPDALIVFASSETE------EALA-----------------GKPSTLS--------RTVSGLKNDFS--------LFSWADKGQWETVQTANDKARRKADWFRIGFEPLFADFTQAGSWFIIYTLIECAVLASIAVLVDNSAMQFLLFCAMHSLTFVLLVGWKPFANSVLNAVAAMVMLTDAVCMGMLALAAGTFNGTATAARMDTAVMVIQALCIAVLVIPLYVDTAVSIYGMIRNRKG-SVDERENEA-----------DRAEREVTKRLTLRLWGRAWFRMVFSNMFACLRDTREGIRGP-THSARQGRLR 687 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1085.1140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1085.1140.1 >prot_S-firma_F_contig1085.1140.1 ID=prot_S-firma_F_contig1085.1140.1|Name=mRNA_S-firma_F_contig1085.1140.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=993bp MSATELALQASSRSRSRRGRGRFSAVANADGRDTRGPSPRNADGDLISFEback to top mRNA from alignment at S-firma_F_contig1085:13848..25452- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1085.1140.1 ID=mRNA_S-firma_F_contig1085.1140.1|Name=mRNA_S-firma_F_contig1085.1140.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=11605bp|location=Sequence derived from alignment at S-firma_F_contig1085:13848..25452- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1085:13848..25452- >mRNA_S-firma_F_contig1085.1140.1 ID=mRNA_S-firma_F_contig1085.1140.1|Name=mRNA_S-firma_F_contig1085.1140.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=5958bp|location=Sequence derived from alignment at S-firma_F_contig1085:13848..25452- (Sphaerotrichia firma ET2_F female)back to top |