mRNA_S-firma_F_contig10848.1136.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10848.1136.1 vs. uniprot
Match: D7G505_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G505_ECTSI) HSP 1 Score: 474 bits (1220), Expect = 1.320e-153 Identity = 296/688 (43.02%), Postives = 397/688 (57.70%), Query Frame = 1
Query: 1 RAENQIKQAWYPSGVVLDLRKDDVGREEGDRVALSMDLDAFRTHCDLDMGGYTINSD---AVVSLLKNPLPHERISGGKLRIPMPDEQERVRAQDFTSFQIGVVRGAAQLGDIKLYLILPHLREAPSAPRRRSISRRASFDDTTVYQEALARTVQHVTSTLVFKGTFGGPVQTAEQLRLASHTEVFYVPPESGTRVLFFQTLKKELSAGF--EVRLDDHPLGLVFRGFNQKHMICDAIIDPREAFEISAVADRVVGLAKRVSEAVSSVVHADSPGLEVSLDFAVTMEHAR--DGLIVVPTARFWAGVDGAAQRGGEEDQAGRGGDLRFGNVTPFSLFGSDQATSISGHAYGQDNPPHVRRHEQLDEAESPCSALETHDPSTVTRVGLNIYNPVVHHAVSSSKGNAFSVALSASPVSNAVELARSLDLGGARISQKRVDDVDRARLRAENAAWAVLSGVEGASGGLRVETTYVYAAPAGQDGGGFARGVEVMGGDLVWEVYGMQDDGWADKEATLALPWEVVHGLYAALCWRGLASIQYAFGYVPALE--------PGVSTREQLPLGHLGAAAERTLSTGALAIR-QPIIGPELREGLGDFGFLVFPQDASWVAAAGGDPRMPVGQLVGPGGGRLGGGLGPGVRGALTTYGRDFPTKLDGVRRLRSDGGKGLLRQCCIILRLVMCAAR 2016
R IK+AW P G VLDL KD V REEG + AL +DLD RT CDL G I AVVSLLK PLP ERI+ GK R+ +P E RV+AQ T+FQIG G+ LG++K++++L + R+ +P R+++RRA+ D VYQEAL+RT+ ++ F+ F GP T +QLRLASH EV Y+PPE+ R FF+ L +EL GF E R D P +V + FNQKH + + +P E + +AD +V A VS+V +AD G E+S+D AVTM A+ D +++ P ++A GA+ R G + GRG DL F +VT +SLFGSDQ SISG AYG+ + P V RH LD+A + ++ + ++R LN+Y+P V HA +SSKG+A +VAL S VSNAVEL R + + GA +S RV + A + AA A++SG++GA+G LR E TY+ + DG A+G E M DL+ EV+G+Q GW D +AT ALP EVV L ALC R L SI++ F + L PG QLP+GHL + E L L++R +G LR G GFL DASW+ GG R+P+G L+ GGG GG GP R L + P K G+ L GG+ LL + VM AR
Sbjct: 14 RGHEAIKRAWMPKGHVLDLSKDHVEREEGAQAALRIDLDGLRTGCDLTEAGEVITGGDYGAVVSLLKRPLPSERIASGKYRLLVPGEDARVKAQHITNFQIGFGHGSPSLGEVKMFIMLTYRRDPNDSPDGRTVARRATIPDVDVYQEALSRTLIALSKREGFRAVFVGPTHTTQQLRLASHKEVIYLPPEADARTSFFKKLNRELVRGFGLEFRPDAQPFMIVLKAFNQKHALWAPLTEPGEEVMQTVLADNMVAFASTAFTEVSTVFNADRFGSEISVDLAVTMSRAQGSDDVLLAPRGDYYAAGGGASGRSGVGYEGGRGTDLGF-DVTKYSLFGSDQCASISGQAYGKPSLPAVARHSILDDASNALTSADAQLAGVISRTNLNVYSPTVLHATNSSKGHAMAVALRGSRVSNAVELLRGVGVSGAFLSDARVGEAHAAVAKGREAALAIISGMKGANGSLRTEVTYLLESDGADDGA--AQGFERMCADLLGEVFGVQVGGWNDIDATFALPTEVVVCLMHALCVRSLESIKFGFNTLADLGDPRCDDVIPG-----QLPIGHLPSVGESVLRMDGLSLRIAGGVGSALRAGQASCGFLALRDDASWIMKEGGATRLPIGLLIRGGGGLRSGGFGPRSRAFLVSQTHVMPAKTRGLDLLL-HGGERLLELLRSVFHHVMEEAR 692 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10848.1136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10848.1136.1 >prot_S-firma_F_contig10848.1136.1 ID=prot_S-firma_F_contig10848.1136.1|Name=mRNA_S-firma_F_contig10848.1136.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=672bp RAENQIKQAWYPSGVVLDLRKDDVGREEGDRVALSMDLDAFRTHCDLDMGback to top mRNA from alignment at S-firma_F_contig10848:891..4764+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10848.1136.1 ID=mRNA_S-firma_F_contig10848.1136.1|Name=mRNA_S-firma_F_contig10848.1136.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3874bp|location=Sequence derived from alignment at S-firma_F_contig10848:891..4764+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10848:891..4764+ >mRNA_S-firma_F_contig10848.1136.1 ID=mRNA_S-firma_F_contig10848.1136.1|Name=mRNA_S-firma_F_contig10848.1136.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=4032bp|location=Sequence derived from alignment at S-firma_F_contig10848:891..4764+ (Sphaerotrichia firma ET2_F female)back to top |