mRNA_S-firma_F_contig10843.1133.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10843.1133.1
Unique NamemRNA_S-firma_F_contig10843.1133.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A482RC67_9ARCH (RNA_pol_L_2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RC67_9ARCH)

HSP 1 Score: 70.1 bits (170), Expect = 9.000e-14
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAALEA 174
            PE   CGY++PHPSEA +++R+QTK G +AAD  R+ L  L+  A HI  TFDAALE+
Sbjct:   10 PEVVFCGYSLPHPSEAKVNMRIQTKAGATAADAFRAGLRTLIDTATHIGATFDAALES 67          
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A168RAQ8_ABSGL (RNA_pol_L_2 domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168RAQ8_ABSGL)

HSP 1 Score: 67.8 bits (164), Expect = 8.330e-13
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAAL 168
            P+ D CGY+IPHPSE  +H+R+QT   T+A D  R  ++DL     HI+D FDA L
Sbjct:   85 PQVDFCGYSIPHPSEHKLHIRIQTSDKTTAVDAFRKGMEDLTDMCTHIKDAFDAEL 140          
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A1X2ILN9_9FUNG (RNA polymerase Rpb3/Rpb11 dimerization domain-domain-containing protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2ILN9_9FUNG)

HSP 1 Score: 66.6 bits (161), Expect = 2.490e-12
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAAL 168
            P+ D CGY+IPHPSE  +H+R+QT   T+A D  R  + DL     HIRDT++A L
Sbjct:   88 PQVDFCGYSIPHPSEPKMHIRIQTSDKTTAVDAFRKGMVDLTDMCSHIRDTYEAEL 143          
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A4Y7LS97_9CRUS (DNA-directed RNA polymerase I subunit D n=1 Tax=Eubosmina coregoni TaxID=186181 RepID=A0A4Y7LS97_9CRUS)

HSP 1 Score: 65.5 bits (158), Expect = 2.590e-12
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAALE 171
            PE + CGYTIPHPSE  +H+R++    TS ADV+R AL+DL     HI D F+ A++
Sbjct:   46 PEVNFCGYTIPHPSEDKLHLRIEMLSNTSPADVLRKALEDLEKVCTHISDKFEEAVK 102          
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A1V9ZQ68_9STRA (RNA_pol_L_2 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQ68_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.580e-12
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAALEADK 180
            P+ D  GYTIPHPSE  +HVRVQT+  T+A   MRSAL DL   A H+  TF   L+A K
Sbjct:   44 PQVDFAGYTIPHPSEPNMHVRVQTQQSTTANQAMRSALTDLKAIASHVDKTFAKELKAFK 103          
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A7S0SNX8_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SNX8_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 3.590e-12
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAALEA 174
            P+  +CGY++PHP E  ++VRVQT    +A   MR AL D+++  +H+ DTFDAA+ A
Sbjct:   53 PQVSLCGYSVPHPMETSVNVRVQTSGEVTATAAMRDALLDIISVCDHVNDTFDAAVSA 110          
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A484EAB1_BRELC (RNA_pol_L_2 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EAB1_BRELC)

HSP 1 Score: 64.7 bits (156), Expect = 4.830e-12
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAALEADK 180
            P+ D CGYTIPHPSE ++H+R+QT+ G  A + MR+ L DL     HI D +   L+A K
Sbjct:   42 PDVDFCGYTIPHPSEPMMHIRLQTRQGAPADEAMRAGLTDLRKVTSHIGDAYRKELKAFK 101          
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A163D2G5_PHYB8 (RNA_pol_L_2 domain-containing protein (Fragment) n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A163D2G5_PHYB8)

HSP 1 Score: 63.9 bits (154), Expect = 7.250e-12
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAAL 168
            PE D+CGY+IPHPSEA +H+R+QT   T+A D ++  L+DL    +HI  T++  L
Sbjct:   28 PEVDLCGYSIPHPSEAKLHLRIQTTNRTTAIDALKKGLEDLTDMCDHIFKTYEDEL 83          
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: RPAC2_SCHPO (DNA-directed RNA polymerases I and III subunit RPAC2 n=1 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=RPAC2_SCHPO)

HSP 1 Score: 64.7 bits (156), Expect = 7.370e-12
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAALEAD 177
            PE + CGY+IPHPSEA ++ R+QT P T+A DV+R  LDDL+   + + + F   L  D
Sbjct:   58 PEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDDLIDLCDAVTEKFTEQLPRD 116          
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A0L0FUU4_9EUKA (RNA_pol_L_2 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FUU4_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 1.090e-11
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAAL 168
            P+T+ CGY +PHPS+  I + +QTK G SA  V+R  L DL   A+H R+TF+ A+
Sbjct:   61 PDTEFCGYVVPHPSDHNIQMHIQTKSGVSAVSVLRKGLSDLQELAQHTRETFEEAM 116          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482RC67_9ARCH9.000e-1455.17RNA_pol_L_2 domain-containing protein n=1 Tax=arch... [more]
A0A168RAQ8_ABSGL8.330e-1350.00RNA_pol_L_2 domain-containing protein n=1 Tax=Absi... [more]
A0A1X2ILN9_9FUNG2.490e-1250.00RNA polymerase Rpb3/Rpb11 dimerization domain-doma... [more]
A0A4Y7LS97_9CRUS2.590e-1250.88DNA-directed RNA polymerase I subunit D n=1 Tax=Eu... [more]
A0A1V9ZQ68_9STRA3.580e-1255.00RNA_pol_L_2 domain-containing protein n=1 Tax=Thra... [more]
A0A7S0SNX8_9CHLO3.590e-1246.55Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A484EAB1_BRELC4.830e-1248.33RNA_pol_L_2 domain-containing protein n=1 Tax=Brem... [more]
A0A163D2G5_PHYB87.250e-1248.21RNA_pol_L_2 domain-containing protein (Fragment) n... [more]
RPAC2_SCHPO7.370e-1247.46DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A0L0FUU4_9EUKA1.090e-1148.21RNA_pol_L_2 domain-containing protein n=1 Tax=Spha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10843contigS-firma_F_contig10843:66..248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog4896.SPAC1687.01.1
Preferred nameRPC19
PFAMsRNA_pol_L_2
Max annot lvl4751|Fungi
KEGG rclassRC02795
KEGG koko:K03020
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181,M00182
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Evalue1.32e-10
EggNOG OGsCOG1761@1|root,KOG3438@2759|Eukaryota,3A631@33154|Opisthokonta,3P58J@4751|Fungi,3QW0W@4890|Ascomycota,3MD5U@451866|Taphrinomycotina
DescriptionDNA-directed RNA polymerase I and III subunit
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size183
Cds size171
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.0717223-UTR-S-firma_F_contig10843:65..771622815628.0717223-UTR-S-firma_F_contig10843:65..77Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10843 66..77 +
1696949464.0645146-UTR-S-firma_F_contig10843:65..771696949464.0645146-UTR-S-firma_F_contig10843:65..77Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10843 66..77 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.0834582-CDS-S-firma_F_contig10843:77..2481622815628.0834582-CDS-S-firma_F_contig10843:77..248Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10843 78..248 +
1696949464.076702-CDS-S-firma_F_contig10843:77..2481696949464.076702-CDS-S-firma_F_contig10843:77..248Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10843 78..248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10843.1133.1prot_S-firma_F_contig10843.1133.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10843 78..248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10843.1133.1

>prot_S-firma_F_contig10843.1133.1 ID=prot_S-firma_F_contig10843.1133.1|Name=mRNA_S-firma_F_contig10843.1133.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=57bp
MCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDA
ALEADK*
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mRNA from alignment at S-firma_F_contig10843:66..248+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10843.1133.1 ID=mRNA_S-firma_F_contig10843.1133.1|Name=mRNA_S-firma_F_contig10843.1133.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=183bp|location=Sequence derived from alignment at S-firma_F_contig10843:66..248+ (Sphaerotrichia firma ET2_F female)
CCAGAAACGGATATGTGTGGGTACACAATCCCGCACCCGTCGGAGGCTGT CATCCACGTGCGGGTGCAGACGAAGCCAGGGACGAGTGCGGCGGACGTCA TGCGGAGTGCGCTGGACGACTTGGTGACTGCGGCGGAGCACATTCGGGAC ACGTTTGATGCGGCCCTGGAGGCGGACAAGTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10843:66..248+

>mRNA_S-firma_F_contig10843.1133.1 ID=mRNA_S-firma_F_contig10843.1133.1|Name=mRNA_S-firma_F_contig10843.1133.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=342bp|location=Sequence derived from alignment at S-firma_F_contig10843:66..248+ (Sphaerotrichia firma ET2_F female)
ATGTGTGGGTACACAATCCCGCACCCGTCGGAGGCTGTCATCCACGTGCG
GGTGCAGACGAAGCCAGGGACGAGTGCGGCGGACGTCATGCGGAGTGCGC
TGGACGACTTGGTGACTGCGGCGGAGCACATTCGGGACACGTTTGATGCG
GCCCTGGAGGCGGACAAGTGAATGTGTGGGTACACAATCCCGCACCCGTC
GGAGGCTGTCATCCACGTGCGGGTGCAGACGAAGCCAGGGACGAGTGCGG
CGGACGTCATGCGGAGTGCGCTGGACGACTTGGTGACTGCGGCGGAGCAC
ATTCGGGACACGTTTGATGCGGCCCTGGAGGCGGACAAGTGA
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