mRNA_S-firma_F_contig10843.1133.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A482RC67_9ARCH (RNA_pol_L_2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RC67_9ARCH) HSP 1 Score: 70.1 bits (170), Expect = 9.000e-14 Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAALEA 174
PE CGY++PHPSEA +++R+QTK G +AAD R+ L L+ A HI TFDAALE+
Sbjct: 10 PEVVFCGYSLPHPSEAKVNMRIQTKAGATAADAFRAGLRTLIDTATHIGATFDAALES 67
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A168RAQ8_ABSGL (RNA_pol_L_2 domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168RAQ8_ABSGL) HSP 1 Score: 67.8 bits (164), Expect = 8.330e-13 Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAAL 168
P+ D CGY+IPHPSE +H+R+QT T+A D R ++DL HI+D FDA L
Sbjct: 85 PQVDFCGYSIPHPSEHKLHIRIQTSDKTTAVDAFRKGMEDLTDMCTHIKDAFDAEL 140
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A1X2ILN9_9FUNG (RNA polymerase Rpb3/Rpb11 dimerization domain-domain-containing protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2ILN9_9FUNG) HSP 1 Score: 66.6 bits (161), Expect = 2.490e-12 Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAAL 168
P+ D CGY+IPHPSE +H+R+QT T+A D R + DL HIRDT++A L
Sbjct: 88 PQVDFCGYSIPHPSEPKMHIRIQTSDKTTAVDAFRKGMVDLTDMCSHIRDTYEAEL 143
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A4Y7LS97_9CRUS (DNA-directed RNA polymerase I subunit D n=1 Tax=Eubosmina coregoni TaxID=186181 RepID=A0A4Y7LS97_9CRUS) HSP 1 Score: 65.5 bits (158), Expect = 2.590e-12 Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAALE 171
PE + CGYTIPHPSE +H+R++ TS ADV+R AL+DL HI D F+ A++
Sbjct: 46 PEVNFCGYTIPHPSEDKLHLRIEMLSNTSPADVLRKALEDLEKVCTHISDKFEEAVK 102
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A1V9ZQ68_9STRA (RNA_pol_L_2 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQ68_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 3.580e-12 Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAALEADK 180
P+ D GYTIPHPSE +HVRVQT+ T+A MRSAL DL A H+ TF L+A K
Sbjct: 44 PQVDFAGYTIPHPSEPNMHVRVQTQQSTTANQAMRSALTDLKAIASHVDKTFAKELKAFK 103
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A7S0SNX8_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SNX8_9CHLO) HSP 1 Score: 65.5 bits (158), Expect = 3.590e-12 Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAALEA 174
P+ +CGY++PHP E ++VRVQT +A MR AL D+++ +H+ DTFDAA+ A
Sbjct: 53 PQVSLCGYSVPHPMETSVNVRVQTSGEVTATAAMRDALLDIISVCDHVNDTFDAAVSA 110
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A484EAB1_BRELC (RNA_pol_L_2 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EAB1_BRELC) HSP 1 Score: 64.7 bits (156), Expect = 4.830e-12 Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAALEADK 180
P+ D CGYTIPHPSE ++H+R+QT+ G A + MR+ L DL HI D + L+A K
Sbjct: 42 PDVDFCGYTIPHPSEPMMHIRLQTRQGAPADEAMRAGLTDLRKVTSHIGDAYRKELKAFK 101
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A163D2G5_PHYB8 (RNA_pol_L_2 domain-containing protein (Fragment) n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A163D2G5_PHYB8) HSP 1 Score: 63.9 bits (154), Expect = 7.250e-12 Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 1
Query: 1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAAL 168
PE D+CGY+IPHPSEA +H+R+QT T+A D ++ L+DL +HI T++ L
Sbjct: 28 PEVDLCGYSIPHPSEAKLHLRIQTTNRTTAIDALKKGLEDLTDMCDHIFKTYEDEL 83
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: RPAC2_SCHPO (DNA-directed RNA polymerases I and III subunit RPAC2 n=1 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=RPAC2_SCHPO) HSP 1 Score: 64.7 bits (156), Expect = 7.370e-12 Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAALEAD 177
PE + CGY+IPHPSEA ++ R+QT P T+A DV+R LDDL+ + + + F L D
Sbjct: 58 PEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDDLIDLCDAVTEKFTEQLPRD 116
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Match: A0A0L0FUU4_9EUKA (RNA_pol_L_2 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FUU4_9EUKA) HSP 1 Score: 64.3 bits (155), Expect = 1.090e-11 Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 1 PETDMCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAAL 168
P+T+ CGY +PHPS+ I + +QTK G SA V+R L DL A+H R+TF+ A+
Sbjct: 61 PDTEFCGYVVPHPSDHNIQMHIQTKSGVSAVSVLRKGLSDLQELAQHTRETFEEAM 116 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10843.1133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10843.1133.1 >prot_S-firma_F_contig10843.1133.1 ID=prot_S-firma_F_contig10843.1133.1|Name=mRNA_S-firma_F_contig10843.1133.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=57bp MCGYTIPHPSEAVIHVRVQTKPGTSAADVMRSALDDLVTAAEHIRDTFDAback to top mRNA from alignment at S-firma_F_contig10843:66..248+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10843.1133.1 ID=mRNA_S-firma_F_contig10843.1133.1|Name=mRNA_S-firma_F_contig10843.1133.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=183bp|location=Sequence derived from alignment at S-firma_F_contig10843:66..248+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10843:66..248+ >mRNA_S-firma_F_contig10843.1133.1 ID=mRNA_S-firma_F_contig10843.1133.1|Name=mRNA_S-firma_F_contig10843.1133.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=342bp|location=Sequence derived from alignment at S-firma_F_contig10843:66..248+ (Sphaerotrichia firma ET2_F female)back to top |