mRNA_S-firma_F_contig10841.1131.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10841.1131.1
Unique NamemRNA_S-firma_F_contig10841.1131.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10841.1131.1 vs. uniprot
Match: A0A6H5K2M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.970e-15
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 2 
Query:    2 ERCRVHAEKSADRTTAAVDAWLAERRRRWQAGKTRCQELAPP 127
            ERCR HAEK +DRTTAA+D+WLAERRRRW+AGKTRC ELAPP
Sbjct: 1359 ERCRAHAEKCSDRTTAAIDSWLAERRRRWEAGKTRCHELAPP 1400
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BLAST of mRNA_S-firma_F_contig10841.1131.1 vs. uniprot
Match: D8LQH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH1_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.010e-15
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 2 
Query:    2 ERCRVHAEKSADRTTAAVDAWLAERRRRWQAGKTRCQELAPP 127
            ERCR HAEK +DRTTAA+D+WLAERRRRW+AGKTRC ELAPP
Sbjct: 3610 ERCRAHAEKCSDRTTAAIDSWLAERRRRWEAGKTRCHELAPP 3651
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10841.1131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2M0_9PHAE1.970e-1583.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQH1_ECTSI2.010e-1583.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10841contigS-firma_F_contig10841:198..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.8880365-CDS-S-firma_F_contig10841:197..5181622815627.8880365-CDS-S-firma_F_contig10841:197..518Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10841 198..518 +
1696949463.9509962-CDS-S-firma_F_contig10841:197..5181696949463.9509962-CDS-S-firma_F_contig10841:197..518Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10841 198..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10841.1131.1prot_S-firma_F_contig10841.1131.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10841 198..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10841.1131.1

>prot_S-firma_F_contig10841.1131.1 ID=prot_S-firma_F_contig10841.1131.1|Name=mRNA_S-firma_F_contig10841.1131.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=107bp
RALPRARREVGGPHDRRRGRVARGAPAPVAGREDALPGASTAAAASQAGG
RSRGRRGRRGDGDGGGGSGGGVAFRGKRLRRWWSRRQPGRRKRRRAGRSP
GYGGDKR
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mRNA from alignment at S-firma_F_contig10841:198..518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10841.1131.1 ID=mRNA_S-firma_F_contig10841.1131.1|Name=mRNA_S-firma_F_contig10841.1131.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=321bp|location=Sequence derived from alignment at S-firma_F_contig10841:198..518+ (Sphaerotrichia firma ET2_F female)
CGAGCGTTGCCGCGTGCACGCCGAGAAGTCGGCGGACCGCACGACCGCCG
CCGTGGACGCGTGGCTCGCGGAGCGCCGGCGCCGGTGGCAGGCCGGGAAG
ACGCGCTGCCAGGAGCTAGCACCGCCGCCGCCGCCAGCCAGGCCGGCGGG
AGGAGCAGGGGAAGGAGAGGCCGCAGGGGCGACGGCGACGGCGGCGGCGG
CAGCGGCGGCGGCGTGGCTTTCAGAGGGAAGCGCCTTCGAAGGTGGTGGA
GCCGACGACAACCCGGCAGGAGGAAGAGGAGGAGGGCCGGCCGCAGTCCC
GGGTACGGCGGTGACAAGCGT
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Coding sequence (CDS) from alignment at S-firma_F_contig10841:198..518+

>mRNA_S-firma_F_contig10841.1131.1 ID=mRNA_S-firma_F_contig10841.1131.1|Name=mRNA_S-firma_F_contig10841.1131.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=642bp|location=Sequence derived from alignment at S-firma_F_contig10841:198..518+ (Sphaerotrichia firma ET2_F female)
CGAGCGTTGCCGCGTGCACGCCGAGAAGTCGGCGGACCGCACGACCGCCG
CCGTGGACGCGTGGCTCGCGGAGCGCCGGCGCCGGTGGCAGGCCGGGAAG
ACGCGCTGCCAGGAGCTAGCACCGCCGCCGCCGCCAGCCAGGCCGGCGGG
AGGAGCAGGGGAAGGAGAGGCCGCAGGGGCGACGGCGACGGCGGCGGCGG
CAGCGGCGGCGGCGTGGCTTTCAGAGGGAAGCGCCTTCGAAGGTGGTGGA
GCCGACGACAACCCGGCAGGAGGAAGAGGAGGAGGGCCGGCCGCAGTCCC
GGGTACGGCGGTGACAAGCGTCGAGCGTTGCCGCGTGCACGCCGAGAAGT
CGGCGGACCGCACGACCGCCGCCGTGGACGCGTGGCTCGCGGAGCGCCGG
CGCCGGTGGCAGGCCGGGAAGACGCGCTGCCAGGAGCTAGCACCGCCGCC
GCCGCCAGCCAGGCCGGCGGGAGGAGCAGGGGAAGGAGAGGCCGCAGGGG
CGACGGCGACGGCGGCGGCGGCAGCGGCGGCGGCGTGGCTTTCAGAGGGA
AGCGCCTTCGAAGGTGGTGGAGCCGACGACAACCCGGCAGGAGGAAGAGG
AGGAGGGCCGGCCGCAGTCCCGGGTACGGCGGTGACAAGCGT
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