mRNA_S-firma_F_contig1084.1129.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1084.1129.1
Unique NamemRNA_S-firma_F_contig1084.1129.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1084.1129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1084contigS-firma_F_contig1084:12021..12956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size911
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1084.1129.1prot_S-firma_F_contig1084.1129.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1084 12262..12787 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.2139845-UTR-S-firma_F_contig1084:12020..122611622815627.2139845-UTR-S-firma_F_contig1084:12020..12261Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1084 12021..12261 +
1696949463.4450798-UTR-S-firma_F_contig1084:12020..122611696949463.4450798-UTR-S-firma_F_contig1084:12020..12261Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1084 12021..12261 +
1622815627.2560313-UTR-S-firma_F_contig1084:12787..129561622815627.2560313-UTR-S-firma_F_contig1084:12787..12956Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1084 12788..12956 +
1696949463.4720292-UTR-S-firma_F_contig1084:12787..129561696949463.4720292-UTR-S-firma_F_contig1084:12787..12956Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1084 12788..12956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.2276511-CDS-S-firma_F_contig1084:12261..124111622815627.2276511-CDS-S-firma_F_contig1084:12261..12411Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1084 12262..12411 +
1696949463.453942-CDS-S-firma_F_contig1084:12261..124111696949463.453942-CDS-S-firma_F_contig1084:12261..12411Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1084 12262..12411 +
1622815627.2393548-CDS-S-firma_F_contig1084:12436..127871622815627.2393548-CDS-S-firma_F_contig1084:12436..12787Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1084 12437..12787 +
1696949463.4627123-CDS-S-firma_F_contig1084:12436..127871696949463.4627123-CDS-S-firma_F_contig1084:12436..12787Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1084 12437..12787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1084.1129.1

>prot_S-firma_F_contig1084.1129.1 ID=prot_S-firma_F_contig1084.1129.1|Name=mRNA_S-firma_F_contig1084.1129.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=167bp
MAPSQMRASSLLWGSPNQRLDSATKETKNKKYPAPAPPPPLPTLLLFPSA
SSFSQLNLVNCLATSGSSGGNKQVITYAGIPPPLSVSAPRKSASATNIHV
PFFLAHSCPHASTPKSKPAERLKSNQMKHIRRERLAGFPVSPSASTSLST
YEVLPRSFLLEATPHS*
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mRNA from alignment at S-firma_F_contig1084:12021..12956+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1084.1129.1 ID=mRNA_S-firma_F_contig1084.1129.1|Name=mRNA_S-firma_F_contig1084.1129.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=936bp|location=Sequence derived from alignment at S-firma_F_contig1084:12021..12956+ (Sphaerotrichia firma ET2_F female)
AACAAAAATGTTGCTTGTATGTAATTCTCGCGATCTTTCAAGTAATAACA
ACGTAAAATTCATTTGCCTTCTCTAGGTAACAGTCAACTGGCCATCGTTT
CAATCTCGGTGCAACAAGCGCACGAGACCGCCGTGTCGTTCGTTTCAGTT
CGGTGAACACCAAAAAAATCAACCGTCTCCCCAAAACCCACCGACCGGTC
CAGAGGTCTAAACGGCTAACCGCACACAACACCGACGGGCCATGGCGCCC
AGCCAGATGCGCGCTTCCAGCTTGCTCTGGGGTTCTCCAAACCAACGCCT
TGACTCGGCCACAAAAGAAACAAAAAACAAAAAGTATCCTGCTCCTGCTC
CTCCTCCTCCGCTTCCTACGCTCCTACTTTTTCCTTCTGCTCCTCTCCCT
CCTCCCTTCCGTCCTCTCCTCTTTCTCTCAACTCAACCTCGTCAACTGCC
TTGCCACGAGTGGATCTTCGGGAGGAAACAAACAGGTCATCACTTATGCA
GGTATCCCGCCACCTCTCTCTGTCTCCGCCCCGCGAAAATCGGCCTCCGC
GACAAACATCCATGTTCCTTTCTTCCTCGCCCACTCGTGTCCACACGCGA
GTACCCCAAAAAGCAAACCAGCAGAACGCCTCAAATCAAATCAAATGAAG
CACATCAGAAGAGAGCGCCTTGCGGGTTTTCCCGTCTCCCCCTCCGCTTC
CACTTCTCTATCTACGTATGAAGTGCTCCCTCGCTCGTTTTTGCTAGAGG
CGACGCCTCACAGCTGAACACAAGAAACGCCAATGCACGGCCCCGATTTT
CATTCACGCCCTGTGCCGCTCCTGCTTCTGCTGATGGTACACCACACAAT
ACAACACAAAAAAAACGAAACCCCGCTCCGCTCCACTCCTCTCAGCTTCT
TCAACCAAACAAAATCCATCACCTCGGCGGCGCCAA
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Coding sequence (CDS) from alignment at S-firma_F_contig1084:12021..12956+

>mRNA_S-firma_F_contig1084.1129.1 ID=mRNA_S-firma_F_contig1084.1129.1|Name=mRNA_S-firma_F_contig1084.1129.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1002bp|location=Sequence derived from alignment at S-firma_F_contig1084:12021..12956+ (Sphaerotrichia firma ET2_F female)
ATGGCGCCCAGCCAGATGCGCGCTTCCAGCTTGCTCTGGGGTTCTCCAAA
CCAACGCCTTGACTCGGCCACAAAAGAAACAAAAAACAAAAAGTATCCTG
CTCCTGCTCCTCCTCCTCCGCTTCCTACGCTCCTACTTTTTCCTTCTGCT
ATGGCGCCCAGCCAGATGCGCGCTTCCAGCTTGCTCTGGGGTTCTCCAAA
CCAACGCCTTGACTCGGCCACAAAAGAAACAAAAAACAAAAAGTATCCTG
CTCCTGCTCCTCCTCCTCCGCTTCCTACGCTCCTACTTTTTCCTTCTGCT
TCCTCTTTCTCTCAACTCAACCTCGTCAACTGCCTTGCCACGAGTGGATC
TTCGGGAGGAAACAAACAGGTCATCACTTATGCAGGTATCCCGCCACCTC
TCTCTGTCTCCGCCCCGCGAAAATCGGCCTCCGCGACAAACATCCATGTT
CCTTTCTTCCTCGCCCACTCGTGTCCACACGCGAGTACCCCAAAAAGCAA
ACCAGCAGAACGCCTCAAATCAAATCAAATGAAGCACATCAGAAGAGAGC
GCCTTGCGGGTTTTCCCGTCTCCCCCTCCGCTTCCACTTCTCTATCTACG
TATGAAGTGCTCCCTCGCTCGTTTTTGCTAGAGGCGACGCCTCACAGCTG
ATCCTCTTTCTCTCAACTCAACCTCGTCAACTGCCTTGCCACGAGTGGAT
CTTCGGGAGGAAACAAACAGGTCATCACTTATGCAGGTATCCCGCCACCT
CTCTCTGTCTCCGCCCCGCGAAAATCGGCCTCCGCGACAAACATCCATGT
TCCTTTCTTCCTCGCCCACTCGTGTCCACACGCGAGTACCCCAAAAAGCA
AACCAGCAGAACGCCTCAAATCAAATCAAATGAAGCACATCAGAAGAGAG
CGCCTTGCGGGTTTTCCCGTCTCCCCCTCCGCTTCCACTTCTCTATCTAC
GTATGAAGTGCTCCCTCGCTCGTTTTTGCTAGAGGCGACGCCTCACAGCT
GA
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