mRNA_S-firma_F_contig10839.1125.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10839.1125.1
Unique NamemRNA_S-firma_F_contig10839.1125.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10839.1125.1 vs. uniprot
Match: A0A6P4XGZ5_BRABE (HSPB1-associated protein 1-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XGZ5_BRABE)

HSP 1 Score: 192 bits (489), Expect = 2.270e-56
Identity = 109/267 (40.82%), Postives = 152/267 (56.93%), Query Frame = 1
Query:   22 RVRLGRLQPPGS-VLKETLCEFVEAGLGDFLLWL--------QGDVDGASPLARYPPAEFFGYMAYAHLSSLLEGHPELPAAAACFSWERFGVGHGDGMESTVWIGGQGAHTACHYDTYAGVNLVAQLCGRKQWTLFPPVDTPLLRPCREPYEESTVWSSMS----KPEAVPGV---HCFVAVLEPGEVLVVPRHWWHKVECLSTSVSINQWVPSPLDVPARVEEAVTRHLACTLQLRRHEGSTHWLVPGERLGTSDEDVADMAAAV 774
            R R G   P    VL ET CE+++A L  F LWL        + +   ++PL  Y P   + Y+ Y +++ L    P++  A     WE FG     G+EST+W+G  GAHT CHYDTY G NLV Q+ GRK+W LFPP D+P L P R PYEES+V+S ++      E  P V   H +V VLEPG+VL VP+HWWH VE LSTS+++N W+    D   R++EAV R +   L ++     + WL P E + +   ++  + AA+
Sbjct:   52 RFRTGPRNPASKDVLWETDCEYIDASLYQFCLWLDPVSPHPPEDNSTDSNPLQPYNPDNTWAYLDYKYMAELFSDQPDILEAVR---WEDFGFPGRSGVESTIWVGSVGAHTPCHYDTY-GCNLVLQVYGRKKWVLFPPEDSPSLYPTRLPYEESSVFSQVNVAHPNVEQHPKVVNSHPYVVVLEPGDVLFVPKHWWHYVESLSTSIAVNSWIEMTSDAEDRLQEAVVRLVL--LSIKSGSDQSQWLNPTENVTSRASNLGFVQAAL 312          
BLAST of mRNA_S-firma_F_contig10839.1125.1 vs. uniprot
Match: A0A3Q2PLN2_FUNHE (HSPB1 associated protein 1 n=2 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2PLN2_FUNHE)

HSP 1 Score: 188 bits (478), Expect = 1.880e-53
Identity = 107/250 (42.80%), Postives = 141/250 (56.40%), Query Frame = 1
Query:    4 LGDARGRVRLGRLQPPGSVLKETLCEFVEAGLGDFLLWLQGDVDGASPLARYPPAEFFGYMAYAHLSSLLEGHPELPAAAACFSWERFGVGHGDGMESTVWIGGQGAHTACHYDTYAGVNLVAQLCGRKQWTLFPPVDTPLLRPCREPYEESTVWSSM-------SKPEAVPGVHCFVAVLEPGEVLVVPRHWWHKVECLST-SVSINQWVPSPLDVPARVEEAVTRHLACTLQLRRHEGSTH-WLVPGE 726
            LG    R RLGR +   + L ET C ++EA +  FL W +   D   P A+YP  E++ Y  Y +++ L +  P +        W  FG    +G EST+WIG +GA+T CH DTY G NLV Q+ GRK+W LFPP DT  L P R PYEES+V+S +       SK     G       LEPG+VL VPRHWWH VE +   +VS+N W+   +D  ARV EAVT+ + C L+  + E +T  WL P E
Sbjct:   49 LGGRLIRFRLGRKEATNAPLFETQCSYIEATVAQFLRWTRRQTD-VGPFAQYPYTEYWAYADYKYITVLFDDKPSMFEDV---KWSEFGFEGRNGEESTLWIGTEGANTPCHLDTY-GCNLVLQVQGRKRWHLFPPGDTAKLYPTRIPYEESSVFSQVDVLHPDRSKFPGFQGARAHAVTLEPGQVLYVPRHWWHYVESIDAITVSVNSWIELEVDDAARVSEAVTKTVVCALKSAQSEDNTDTWLNPTE 293          
BLAST of mRNA_S-firma_F_contig10839.1125.1 vs. uniprot
Match: UPI00189F6A93 (HSPB1-associated protein 1 homolog isoform X1 n=3 Tax=Sebastes umbrosus TaxID=72105 RepID=UPI00189F6A93)

HSP 1 Score: 188 bits (478), Expect = 2.230e-53
Identity = 108/251 (43.03%), Postives = 143/251 (56.97%), Query Frame = 1
Query:    1 RLGDARGRVRLGRLQPPGSVLKETLCEFVEAGLGDFLLWLQGDVD-GASPLARYPPAEFFGYMAYAHLSSLLEGHPELPAAAACFSWERFGVGHGDGMESTVWIGGQGAHTACHYDTYAGVNLVAQLCGRKQWTLFPPVDTPLLRPCREPYEESTVWSS-------MSKPEAVPGVHCFVAVLEPGEVLVVPRHWWHKVECLS-TSVSINQWVPSPLDVPARVEEAVTRHLACTLQLRRHEGSTHWLVPGE 726
            RLGD   R RLGR +   + L ET C +VEA L  FL W +        P   YP +E++ Y  Y +++ L +  P +        W +FG    DG EST+W+G +GA+T CH D+Y G NLV Q+ GRK+W LFPP DT  L P R PYEES+V+S        +S+  A PG    V  L+PG+VL VPR WWH VE L   +VS+N W+ +  D  ARV EAVT+ + C L  +R + +  WL P E
Sbjct:   73 RLGDKLIRFRLGRKEETNTPLFETQCSYVEARLDQFLSWTRDQTGTDVGPFCDYPTSEYWAYADYKYIAVLFQDQPSMFQDV---KWSQFGFEGRDGRESTLWVGTEGANTPCHLDSY-GCNLVLQVQGRKRWHLFPPEDTANLYPTRIPYEESSVFSQVDVLRPDLSRFPAFPGARAHVVTLQPGQVLFVPRLWWHYVESLDHVTVSVNSWMEAEEDDVARVGEAVTKAVVCAL--KRDDDTDDWLNPTE 317          
BLAST of mRNA_S-firma_F_contig10839.1125.1 vs. uniprot
Match: A0A096LPU6_POEFO (HSPB1 associated protein 1 n=1 Tax=Poecilia formosa TaxID=48698 RepID=A0A096LPU6_POEFO)

HSP 1 Score: 187 bits (474), Expect = 2.750e-53
Identity = 106/245 (43.27%), Postives = 138/245 (56.33%), Query Frame = 1
Query:   22 RVRLGRLQPPGSVLKETLCEFVEAGLGDFLLWLQGDVDGASPLARYPPAEFFGYMAYAHLSSLLEGHPELPAAAACFSWERFGVGHGDGMESTVWIGGQGAHTACHYDTYAGVNLVAQLCGRKQWTLFPPVDTPLLRPCREPYEESTVWSSMS----KPEAVP---GVHCFVAVLEPGEVLVVPRHWWHKVECLST-SVSINQWVPSPLDVPARVEEAVTRHLACTLQ-LRRHEGSTHWLVPGER 729
            R RLGR +   + L ET C ++EA +  FL W Q   D  S  + YP +E++ Y  Y ++++L    P +        W  FG     G EST+WIG QGA+T CH DTY G NLV Q+ GRK+W LFPP DT  L P R PYEES+V+S +      P   P   G       LEPG+VL VPRHWWH VE +   +VS+N W+   +D  ARV EAVTR + C L+ +   + +  WL P ER
Sbjct:   55 RFRLGRKEATNAPLFETQCSYIEANVAQFLRWTQHQTDVGS-FSEYPCSEYWAYADYKYITTLFHDQPSMFEDV---KWSEFGFEGRTGKESTLWIGTQGANTPCHLDTY-GCNLVLQVQGRKRWHLFPPEDTAKLYPTRIPYEESSVFSQVHVLRPDPRKFPQFQGARAHTVTLEPGQVLYVPRHWWHYVESIDPITVSVNSWIELEVDDAARVSEAVTRTVVCALKSVPSDDNADAWLNPTER 294          
BLAST of mRNA_S-firma_F_contig10839.1125.1 vs. uniprot
Match: A0A6P7HKK5_9TELE (HSPB1-associated protein 1 isoform X1 n=2 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7HKK5_9TELE)

HSP 1 Score: 188 bits (478), Expect = 3.380e-53
Identity = 112/268 (41.79%), Postives = 151/268 (56.34%), Query Frame = 1
Query:    4 LGDARGRVRLGRLQPPGSVLKETLCEFVEAGLGDFLLWLQGDVD-GASPLARYPPAEFFGYMAYAHLSSLLEGHPELPAAAACFSWERFGVGHGDGMESTVWIGGQGAHTACHYDTYAGVNLVAQLCGRKQWTLFPPVDTPLLRPCREPYEESTVWSSMS-------KPEAVPGVHCFVAVLEPGEVLVVPRHWWHKVECLST-SVSINQWVPSPLDVPARVEEAVTRHLACTLQLRRHEGST-HWLVPGERLGTS-DEDVADMAAAV 774
            LGD   R RLG+ Q   + L ET C +VEA +G FL W QG  D    P + Y  +EF+ Y  Y +++ L E  P +        W  FG    +G EST+WIG +GA+T CH D+Y G NLV Q+ GRK+W LFPP DT  L P R PYEES+V+S +        +  A       V  L+PG+VL VPRHWWH VE +   +VS+N W+    D  ARV EAVT+ + C ++  + + +T +WL P E    S DE++  +  AV
Sbjct:   60 LGDRHVRFRLGKKQETNTPLFETQCPYVEATVGQFLSWTQGQPDTDVGPFSEYSCSEFWAYADYKYIAVLFEDQPFMFEDVR---WSEFGFAERNGRESTLWIGTEGANTPCHLDSY-GCNLVLQVQGRKRWHLFPPEDTDNLYPTRIPYEESSVFSQVDVLHPDLRRCPAFASARPHVVTLQPGQVLYVPRHWWHYVESVDPITVSVNSWIELEEDEVARVSEAVTKTVVCAIKSSQSDDNTDNWLNPTETGEASHDENMQYLNLAV 323          
BLAST of mRNA_S-firma_F_contig10839.1125.1 vs. uniprot
Match: H2M241_ORYLA (HSPB1 associated protein 1 n=3 Tax=Oryzias latipes TaxID=8090 RepID=H2M241_ORYLA)

HSP 1 Score: 187 bits (475), Expect = 6.180e-53
Identity = 107/259 (41.31%), Postives = 144/259 (55.60%), Query Frame = 1
Query:    1 RLGDARGRVRLGRLQPPGSVLKETLCEFVEAGLGDFLLWLQGDVDGASPLARYPPAEFFGYMAYAHLSSLLEGHPELPAAAACFSWERFGVGHGDGMESTVWIGGQGAHTACHYDTYAGVNLVAQLCGRKQWTLFPPVDTPLLRPCREPYEESTVWS-------SMSKPEAVPGVHCFVAVLEPGEVLVVPRHWWHKVECLS-TSVSINQWVPSPLDVPARVEEAVTRHLACTLQLRRHEGSTH-WLVPGERLGTSDED 750
            RLGD   R RLGR Q   + L ET C +V+A +  FL W QG  D   P + YP +E++ Y  Y +++ L E  P +        W  FG    +G +STVWIG +GA+T CH DTY G NLV Q+ GRK+W LFPP DT  L P R PYEES+V+S        + +  A      ++  L+PG+VL VPRHWWH VE +   +VS+N W+   +D  ARV EAVT+ +   ++    E +   WL P E    S  +
Sbjct:   44 RLGDRLVRFRLGRKQKTSAPLFETQCSYVQARIAHFLCWTQGQTD-VGPFSEYPYSEYWAYADYKYIAMLFEDQPSMFEDV---KWSDFGFEGRNGSDSTVWIGTKGANTPCHMDTY-GCNLVLQVQGRKRWHLFPPEDTTNLYPTRIPYEESSVFSLVHVQSPDLKRFPAFGAAQAYIVTLQPGQVLYVPRHWWHYVESVDPVTVSVNTWIELEVDDFARVSEAVTKMVVWAIKSAESEDNDDSWLNPTEEGSASHNE 297          
BLAST of mRNA_S-firma_F_contig10839.1125.1 vs. uniprot
Match: UPI00146A2CD8 (HSPB1-associated protein 1 homolog n=2 Tax=Notothenioidei TaxID=8205 RepID=UPI00146A2CD8)

HSP 1 Score: 187 bits (475), Expect = 7.150e-53
Identity = 112/262 (42.75%), Postives = 151/262 (57.63%), Query Frame = 1
Query:   22 RVRLGRLQPPGSVLKETLCEFVEAGLGDFLLWLQGDVDG-ASPLARYPPAEFFGYMAYAHLSSLLEGHPELPAAAACFSWERFGVGHGDGMESTVWIGGQGAHTACHYDTYAGVNLVAQLCGRKQWTLFPPVDTPLLRPCREPYEESTVWSSMS--KPEA--VPGVH---CFVAVLEPGEVLVVPRHWWHKVECLST-SVSINQWVPSPLDVP-ARVEEAVTRHLACTLQLRRHEGSTHWLVPGER-LGTSDEDVADMAAAV 774
            R RLGR +   + L ET C + EA L  FLLW QG+  G   P   YP +E++ Y  Y +++ L +   + PA      W +FG    +G EST+WIG +GA+T CH D+Y G NLV Q+ GRK+W LFPP DTP L P R P+EES+V+S +    P+    PG H     +  L+PG+VL VPRHWWH VE L   +VS+N W+    D   ARV EAVT+ + C    +R E    WL P E  + + DE++  +  AV
Sbjct:   53 RFRLGRKEETNTPLFETQCSYEEATLEHFLLWTQGEKQGDVGPFCEYPKSEYWAYADYKYIALLFQ---DQPAMFEDVKWSQFGFEGRNGRESTLWIGSEGANTPCHLDSY-GCNLVLQVQGRKRWHLFPPEDTPHLYPTRIPFEESSVFSQLDVLHPDLRRFPGFHGARAHIVTLQPGQVLYVPRHWWHYVESLDPITVSVNSWIEMEDDDDVARVGEAVTKAVVCAF--KRDENPEDWLNPTEEGVASHDENMQCVNLAV 308          
BLAST of mRNA_S-firma_F_contig10839.1125.1 vs. uniprot
Match: A0A8C2Z5H0_CYCLU (Hspb associated protein 1 n=1 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C2Z5H0_CYCLU)

HSP 1 Score: 186 bits (471), Expect = 1.180e-52
Identity = 110/259 (42.47%), Postives = 143/259 (55.21%), Query Frame = 1
Query:    1 RLGDARGRVRLGRLQPPGSVLKETLCEFVEAGLGDFLLWLQGDVDG-ASPLARYPPAEFFGYMAYAHLSSLLEGHPELPAAAACFSWERFGVGHGDGMESTVWIGGQGAHTACHYDTYAGVNLVAQLCGRKQWTLFPPVDTPLLRPCREPYEESTVWS-------SMSKPEAVPGVHCFVAVLEPGEVLVVPRHWWHKVECLST-SVSINQWVPSPLDVPARVEEAVTRHLACTLQLRRHEGSTHWLVPGERLGTSDED 750
            RLGD   R RLGR +   + L ET C +VEA L DFL W +G     A P  +YP ++++ Y  Y +++ L +  P +        W  FG     G EST+W+G  GA+T CH D+Y G NLV Q+ GRK+W LFPP DT  L P R PYEES+V+S        + +  A  G    V  L+PG+VL VPRHWWH VE L   +VSIN W+   +D  ARV EAVT+  A    L+    +  WL P E    S +D
Sbjct:   42 RLGDKVVRFRLGRKEETNTPLFETQCSYVEARLEDFLCWTRGQTGPHAGPFCKYPNSQYWAYADYKYIALLFQDQPSMFEDV---KWSDFGFEGRGGRESTLWVGTAGANTPCHLDSY-GCNLVLQVQGRKRWHLFPPEDTEKLYPTRIPYEESSVFSRVHVVHPDLKRFPAFNGARAHVVTLQPGQVLYVPRHWWHYVESLDPITVSINSWIELEMDDLARVGEAVTK--AVVFALKADADTDDWLNPTEAGVASHQD 294          
BLAST of mRNA_S-firma_F_contig10839.1125.1 vs. uniprot
Match: UPI001FB62900 (HSPB1-associated protein 1 homolog isoform X1 n=2 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB62900)

HSP 1 Score: 186 bits (472), Expect = 2.020e-52
Identity = 106/251 (42.23%), Postives = 144/251 (57.37%), Query Frame = 1
Query:    4 LGDARGRVRLGRLQPPGSVLKETLCEFVEAGLGDFLLWLQGDVD-GASPLARYPPAEFFGYMAYAHLSSLLEGHPELPAAAACFSWERFGVGHGDGMESTVWIGGQGAHTACHYDTYAGVNLVAQLCGRKQWTLFPPVDTPLLRPCREPYEESTVWSSMS--KPE-----AVPGVHCFVAVLEPGEVLVVPRHWWHKVECLST-SVSINQWVPSPLDVPARVEEAVTRHLACTLQLRRHEGST-HWLVPGE 726
            LGD   R RLGR +   + L ET C +VEA +  FL W +G       P ++YP ++ + Y  Y +++ L +  P +        W  FG    DG EST+WIG +GA+T CH DTY G NLV Q+ GRK+W LFPP DT  L P R PYEES+V+S +    P+     +  G    V +L+PG+VL VPRHWWH VE +   +VS+N W+    D  +RV EAVTR + C ++  R + +T  WL P E
Sbjct:   57 LGDRLVRFRLGRKEEKNTPLFETQCSYVEATVAQFLSWTRGQSGTDIGPFSKYPCSDHWAYADYKYIAMLFQDQPFMFEDV---KWSEFGFEGRDGKESTLWIGTEGANTPCHQDTY-GCNLVLQIQGRKRWHLFPPEDTAHLYPTRIPYEESSVFSQVDVLHPDLRRFPSFHGARAHVVILQPGQVLYVPRHWWHYVESVDPITVSVNSWIELEADDVSRVSEAVTRAVVCAVKSSRSDDNTGDWLNPTE 303          
BLAST of mRNA_S-firma_F_contig10839.1125.1 vs. uniprot
Match: A0A3Q3ENV9_9LABR (HSPB1 associated protein 1 n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3ENV9_9LABR)

HSP 1 Score: 186 bits (473), Expect = 2.030e-52
Identity = 112/268 (41.79%), Postives = 149/268 (55.60%), Query Frame = 1
Query:    4 LGDARGRVRLGRLQPPGSVLKETLCEFVEAGLGDFLLWLQGDVD-GASPLARYPPAEFFGYMAYAHLSSLLEGHPELPAAAACFSWERFGVGHGDGMESTVWIGGQGAHTACHYDTYAGVNLVAQLCGRKQWTLFPPVDTPLLRPCREPYEESTVWSSMS----KPEAVP---GVHCFVAVLEPGEVLVVPRHWWHKVECLST-SVSINQWVPSPLDVPARVEEAVTRHLACTLQLR-RHEGSTHWLVPGER-LGTSDEDVADMAAAV 774
            LGD   R RLGR     + L ET C +VEA L  FL W +        P   YP + ++ Y  Y +++ L E  P +        W  FG    DG EST+WIG QGA+T CH D+Y G NLV Q+ GRK+W LFPP DT  L P R PYEES+V+S +      P+  P   G    V  L+PG+VL VPRHWWH VE +   +VS+N W+   +D  ARV EAVT+ + C L+     + + +WL P E  +G+ DE++  +  AV
Sbjct:   49 LGDKLVRFRLGRKDETKTPLFETQCSYVEAKLEHFLNWTRDHAGRDVGPFCEYPISAYWAYADYKYIAMLFEDQPSMFEDV---KWSEFGFEGRDGKESTLWIGTQGANTPCHLDSY-GCNLVLQVHGRKRWHLFPPEDTVHLYPTRIPYEESSVFSQVDVLHPDPQRFPAFQGARAHVVTLQPGQVLYVPRHWWHYVESVDPITVSVNSWIELEVDHIARVSEAVTKAVVCALKSAPSDDNADNWLNPTEEGVGSHDENMQYLNLAV 312          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10839.1125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P4XGZ5_BRABE2.270e-5640.82HSPB1-associated protein 1-like n=1 Tax=Branchiost... [more]
A0A3Q2PLN2_FUNHE1.880e-5342.80HSPB1 associated protein 1 n=2 Tax=Fundulus hetero... [more]
UPI00189F6A932.230e-5343.03HSPB1-associated protein 1 homolog isoform X1 n=3 ... [more]
A0A096LPU6_POEFO2.750e-5343.27HSPB1 associated protein 1 n=1 Tax=Poecilia formos... [more]
A0A6P7HKK5_9TELE3.380e-5341.79HSPB1-associated protein 1 isoform X1 n=2 Tax=Para... [more]
H2M241_ORYLA6.180e-5341.31HSPB1 associated protein 1 n=3 Tax=Oryzias latipes... [more]
UPI00146A2CD87.150e-5342.75HSPB1-associated protein 1 homolog n=2 Tax=Notothe... [more]
A0A8C2Z5H0_CYCLU1.180e-5242.47Hspb associated protein 1 n=1 Tax=Cyclopterus lump... [more]
UPI001FB629002.020e-5242.23HSPB1-associated protein 1 homolog isoform X1 n=2 ... [more]
A0A3Q3ENV9_9LABR2.030e-5241.79HSPB1 associated protein 1 n=1 Tax=Labrus bergylta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10839contigS-firma_F_contig10839:3584..4444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog8090.ENSORLP00000012478
Preferred nameHSPBAP1
PFAMsCupin_8
Max annot lvl33208|Metazoa
KEGG koko:K19375
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Evalue8.02e-54
EggNOG OGsKOG2132@1|root,KOG2132@2759|Eukaryota,39FCN@33154|Opisthokonta,3B9P1@33208|Metazoa,3CW37@33213|Bilateria,4858F@7711|Chordata,492P0@7742|Vertebrata,49Y9S@7898|Actinopterygii
DescriptionHspb associated protein 1
COG categoryBT
BRITEko00000,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionJumonji domain protein
Ec32 orthologEc-01_010780.1
Exons2
Model size774
Cds size774
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.153097-CDS-S-firma_F_contig10839:3583..37941622815627.153097-CDS-S-firma_F_contig10839:3583..3794Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10839 3584..3794 -
1696949463.4221387-CDS-S-firma_F_contig10839:3583..37941696949463.4221387-CDS-S-firma_F_contig10839:3583..3794Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10839 3584..3794 -
1622815627.1669009-CDS-S-firma_F_contig10839:3881..44441622815627.1669009-CDS-S-firma_F_contig10839:3881..4444Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10839 3882..4444 -
1696949463.4335902-CDS-S-firma_F_contig10839:3881..44441696949463.4335902-CDS-S-firma_F_contig10839:3881..4444Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10839 3882..4444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10839.1125.1prot_S-firma_F_contig10839.1125.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10839 3584..4444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10839.1125.1

>prot_S-firma_F_contig10839.1125.1 ID=prot_S-firma_F_contig10839.1125.1|Name=mRNA_S-firma_F_contig10839.1125.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=258bp
RLGDARGRVRLGRLQPPGSVLKETLCEFVEAGLGDFLLWLQGDVDGASPL
ARYPPAEFFGYMAYAHLSSLLEGHPELPAAAACFSWERFGVGHGDGMEST
VWIGGQGAHTACHYDTYAGVNLVAQLCGRKQWTLFPPVDTPLLRPCREPY
EESTVWSSMSKPEAVPGVHCFVAVLEPGEVLVVPRHWWHKVECLSTSVSI
NQWVPSPLDVPARVEEAVTRHLACTLQLRRHEGSTHWLVPGERLGTSDED
VADMAAAV
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mRNA from alignment at S-firma_F_contig10839:3584..4444-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10839.1125.1 ID=mRNA_S-firma_F_contig10839.1125.1|Name=mRNA_S-firma_F_contig10839.1125.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=861bp|location=Sequence derived from alignment at S-firma_F_contig10839:3584..4444- (Sphaerotrichia firma ET2_F female)
AGGCTGGGGGACGCCCGTGGCCGTGTGCGGCTTGGTCGATTGCAACCGCC GGGGTCCGTGCTGAAGGAGACGTTGTGCGAGTTTGTGGAGGCCGGCCTCG GCGATTTCCTGTTGTGGTTGCAGGGTGACGTGGACGGTGCATCACCCTTG GCGAGGTACCCACCCGCGGAGTTCTTTGGGTACATGGCGTACGCGCATTT GAGTTCACTGCTGGAGGGCCACCCGGAGCTGCCTGCCGCCGCCGCTTGTT TCAGCTGGGAGCGGTTTGGTGTTGGCCACGGCGATGGGATGGAGTCCACG GTGTGGATTGGTGGCCAGGGCGCCCACACTGCTTGCCACTACGACACGTA CGCCGGCGTGAACCTCGTGGCGCAGCTGTGTGGTCGAAAGCAGTGGACGC TGTTTCCCCCTGTTGACACACCCCTGTTGCGGCCTTGCCGGGAGCCGTAC GAGGAGTCTACGGTGTGGAGCAGTATGTCCAAGCCCGAAGCTGTCCCTGG CGTGCACTGCTTTGTGGCTGTGTTGGAACCTGGGGAAGTTCTGGTGGTGC CGCGTCATTGGTGGTGGGTGTTGCGTTCTTGCCTAACTTCTTGGCCGTGA GCTTTGCCCTTAGTTCACTGCCCCCGCCCCCCCGCCCCCCCCCCCTTCAG GCACAAAGTCGAATGCTTATCGACGTCGGTGTCCATCAACCAGTGGGTGC CCAGCCCGCTCGATGTCCCTGCCCGCGTGGAAGAAGCCGTGACACGGCAC CTCGCGTGTACACTGCAGCTGCGGCGCCATGAAGGAAGCACCCACTGGCT AGTACCCGGGGAACGGCTGGGTACGTCAGATGAGGACGTGGCGGACATGG CAGCTGCGGTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10839:3584..4444-

>mRNA_S-firma_F_contig10839.1125.1 ID=mRNA_S-firma_F_contig10839.1125.1|Name=mRNA_S-firma_F_contig10839.1125.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1548bp|location=Sequence derived from alignment at S-firma_F_contig10839:3584..4444- (Sphaerotrichia firma ET2_F female)
AGGCTGGGGGACGCCCGTGGCCGTGTGCGGCTTGGTCGATTGCAACCGCC
GGGGTCCGTGCTGAAGGAGACGTTGTGCGAGTTTGTGGAGGCCGGCCTCG
GCGATTTCCTGTTGTGGTTGCAGGGTGACGTGGACGGTGCATCACCCTTG
GCGAGGTACCCACCCGCGGAGTTCTTTGGGTACATGGCGTACGCGCATTT
GAGTTCACTGCTGGAGGGCCACCCGGAGCTGCCTGCCGCCGCCGCTTGTT
TCAGCTGGGAGCGGTTTGGTGTTGGCCACGGCGATGGGATGGAGTCCACG
GTGTGGATTGGTGGCCAGGGCGCCCACACTGCTTGCCACTACGACACGTA
CGCCGGCGTGAACCTCGTGGCGCAGCTGTGTGGTCGAAAGCAGTGGACGC
TGTTTCCCCCTGTTGACACACCCCTGTTGCGGCCTTGCCGGGAGCCGTAC
GAGGAGTCTACGGTGTGGAGCAGTATGTCCAAGCCCGAAGCTGTCCCTGG
CGTGCACTGCTTTGTGGCTGTGTTGGAACCTGGGGAAGTTCTGGTGGTGC
CGCGTCATTGGTGAGGCTGGGGGACGCCCGTGGCCGTGTGCGGCTTGGTC
GATTGCAACCGCCGGGGTCCGTGCTGAAGGAGACGTTGTGCGAGTTTGTG
GAGGCCGGCCTCGGCGATTTCCTGTTGTGGTTGCAGGGTGACGTGGACGG
TGCATCACCCTTGGCGAGGTACCCACCCGCGGAGTTCTTTGGGTACATGG
CGTACGCGCATTTGAGTTCACTGCTGGAGGGCCACCCGGAGCTGCCTGCC
GCCGCCGCTTGTTTCAGCTGGGAGCGGTTTGGTGTTGGCCACGGCGATGG
GATGGAGTCCACGGTGTGGATTGGTGGCCAGGGCGCCCACACTGCTTGCC
ACTACGACACGTACGCCGGCGTGAACCTCGTGGCGCAGCTGTGTGGTCGA
AAGCAGTGGACGCTGTTTCCCCCTGTTGACACACCCCTGTTGCGGCCTTG
CCGGGAGCCGTACGAGGAGTCTACGGTGTGGAGCAGTATGTCCAAGCCCG
AAGCTGTCCCTGGCGTGCACTGCTTTGTGGCTGTGTTGGAACCTGGGGAA
GTTCTGGTGGTGCCGCGTCATTGGTGGCACAAAGTCGAATGCTTATCGAC
GTCGGTGTCCATCAACCAGTGGGTGCCCAGCCCGCTCGATGTCCCTGCCC
GCGTGGAAGAAGCCGTGACACGGCACCTCGCGTGTACACTGCAGCTGCGG
CGCCATGAAGGAAGCACCCACTGGCTAGTACCCGGGGAACGGCTGGGTAC
GTCAGATGAGGACGTGGCGGACATGGCAGCTGCGGTGGCACAAAGTCGAA
TGCTTATCGACGTCGGTGTCCATCAACCAGTGGGTGCCCAGCCCGCTCGA
TGTCCCTGCCCGCGTGGAAGAAGCCGTGACACGGCACCTCGCGTGTACAC
TGCAGCTGCGGCGCCATGAAGGAAGCACCCACTGGCTAGTACCCGGGGAA
CGGCTGGGTACGTCAGATGAGGACGTGGCGGACATGGCAGCTGCGGTG
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