mRNA_S-firma_F_contig10839.1124.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10839.1124.1
Unique NamemRNA_S-firma_F_contig10839.1124.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10839.1124.1 vs. uniprot
Match: UPI00036B865C (T9SS type A sorting domain-containing protein n=1 Tax=Lewinella persica TaxID=70998 RepID=UPI00036B865C)

HSP 1 Score: 72.8 bits (177), Expect = 3.070e-11
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    1 DILHEFYSALGGANWTNDANWTTTDDYCTYFGVACDLTYDVVSIRLVNNNLQGPLPPVIAQLPALTNLVLSGNNITG 231
            + L   Y+A  G NWT++ NW T  DYCT+FGV CD+   V  + L NNNL G LP  +A L  +  L  + N+ TG
Sbjct:  251 NALEAIYNATNGDNWTDNTNWLTDCDYCTWFGVTCDVNGRVRRLELPNNNLIGTLPAELADLTEVEYLRFNNNSFTG 327          
BLAST of mRNA_S-firma_F_contig10839.1124.1 vs. uniprot
Match: A0A0M9E098_9DELT (Putative leucine rich repeat protein (Fragment) n=1 Tax=Candidatus Magnetomorum sp. HK-1 TaxID=1509431 RepID=A0A0M9E098_9DELT)

HSP 1 Score: 69.3 bits (168), Expect = 9.100e-11
Identity = 46/110 (41.82%), Postives = 58/110 (52.73%), Query Frame = 1
Query:    1 DILHEFYSALGGANWTNDANWTT-TDDYCTYFGVACDLTYDVVSIRLVNNNLQGPLPPVIAQLPALTNLVLSGNN-ITGQLS--FLPLMSGLLYLD---LTDNALSGDFP 309
            DIL   Y   GG NW N  NW   +   C++FGV CD T +V+ +RL +NNL G +P  I +L  L  L L GN  I+G LS   +P    LL L+   L    LSG  P
Sbjct:   46 DILTHIYDLTGGGNWKNYKNWLDDSQSECSWFGVTCDETKNVIMLRLGDNNLSGQIPNEILKLKNLKELDLGGNQQISGTLSDFIVPASEKLLKLERLFLCCMNLSGSIP 155          
BLAST of mRNA_S-firma_F_contig10839.1124.1 vs. uniprot
Match: A0A2H3L7N3_9CHLR (Uncharacterized protein n=2 Tax=Candidatus Chloroploca TaxID=1579476 RepID=A0A2H3L7N3_9CHLR)

HSP 1 Score: 70.9 bits (172), Expect = 1.230e-10
Identity = 37/76 (48.68%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    7 LHEFYSALGGANWTNDANWTTTDDYCTYFGVACDLTYDVVS-IRLVNNNLQGPLPPVIAQLPALTNLVLSGNNITG 231
            L  FY A  G NWTN+ NW TT + CT+ G+ C    + VS I L NN L+G +PP  +QL  L  L LS N ITG
Sbjct:   52 LVAFYQATDGPNWTNNTNWLTTTEACTWHGIWCVPGENYVSQISLSNNRLKGAIPPEFSQLSKLNYLFLSNNQITG 127          
BLAST of mRNA_S-firma_F_contig10839.1124.1 vs. uniprot
Match: A0A2P6NUN3_9EUKA (RHS repeat-associated core domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NUN3_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 1.470e-10
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    7 LHEFYSALGGANWTNDANWT--TTDDYCTYFGVACDLTYDVVSIRLVNNNLQGPLPPVIAQLPALTNLVLSGNNITGQLS 240
            L  FY A GG NWTN+A W   T++ YC +FG+ C++T D + I L +NNL G + P    L  +T+L LS N + G LS
Sbjct:   26 LRSFYEATGGTNWTNNAGWNNGTSEVYCDWFGIECNVTSDKLRIDLSHNNLVGQISPNFTLLN-ITHLNLSNNTLYGSLS 104          
BLAST of mRNA_S-firma_F_contig10839.1124.1 vs. uniprot
Match: A0A7C5MPA3_9BACT (Fibronectin type-III domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C5MPA3_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 7.170e-10
Identity = 37/82 (45.12%), Postives = 49/82 (59.76%), Query Frame = 1
Query:    7 LHEFYSALGGANWTNDANWTTTDDYCTYFGVACDLTYDVVSIRLVNNNLQGPLPPVIAQLPALTNLVLSGNNITGQLSFLPL 252
            L +FY A  G NW  +  W  T+  C+++GV+C L+  V  + L  N LQGPLP   AQLP L  L+LSGN +TG +   PL
Sbjct:   57 LVDFYDATNGNNWQYNDGWKHTNTPCSWYGVSC-LSGHVSELHLELNGLQGPLPD-FAQLPFLQQLILSGNELTGNIPDFPL 136          
BLAST of mRNA_S-firma_F_contig10839.1124.1 vs. uniprot
Match: A0A7Y1VSS3_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7Y1VSS3_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 1.090e-9
Identity = 38/115 (33.04%), Postives = 65/115 (56.52%), Query Frame = 1
Query:    7 LHEFYSALGGANWTNDANWTTTDDYCTYFGVACDLTYDVVSIRLVNNNLQGPLPPVIAQLPALTNLVLSGNNIT---GQLSFLPLMSGLLYLDLTDNALSGDFP-SLANLTAASE 339
            L   ++A  G  WTN +NW  T D C ++GV C++   V ++ L  NNL G +PP +A L  L ++  S N ++    +++ LPL +    L++++N  SG+ P  ++NL +  E
Sbjct:   51 LMALFNATNGPAWTNRSNWGDTCDVCLWYGVNCNMNNRVQALSLPLNNLNGEIPPDLADLTFLESIDFSSNELSVLASEITSLPLKT----LNISNNLFSGNLPPEISNLASTLE 161          
BLAST of mRNA_S-firma_F_contig10839.1124.1 vs. uniprot
Match: A0A1Z5J6P4_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6P4_FISSO)

HSP 1 Score: 67.0 bits (162), Expect = 2.350e-9
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   16 FYSALGGANWTNDANWTTTDDYCTYFGVACDLTYDVVSIRLVNNNLQGPLPPVIAQLPALTNLVLSGNNITGQL-SFLPLMSGLLYLDLTDNALSG 300
            FY A GG+NWT +  W   ++YC+++GV CDL   V  + L  NNL+G LP  I+ L  + +  +  N ++G + + +   + L  LDL DN  +G
Sbjct:  110 FYYATGGSNWTKNDGWLRDENYCSWYGVTCDLEDKVFELTLDKNNLKGTLPQEISLLDTMESFGVYQNALSGTVPNGIVEWTELRLLDLEDNNFTG 205          
BLAST of mRNA_S-firma_F_contig10839.1124.1 vs. uniprot
Match: A0A022QVH4_ERYGU (Protein kinase domain-containing protein n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QVH4_ERYGU)

HSP 1 Score: 63.2 bits (152), Expect = 5.470e-8
Identity = 56/181 (30.94%), Postives = 82/181 (45.30%), Query Frame = 1
Query:   61 WTTTDDYCTYFGVACDLTYD-VVSIRLVNNNLQGPLPPVIAQLPALTNLVLSGNNITGQLSFLPLMSGLLYLDLTDNALSGDFPSLANLTAASEXXXXXXXXXXPLPAALPKYLEALYVYXXXXXXXXXXGVSGSPRLRVLWAANNTLHGNMTD--NFQPALTHVDLSYNNLTGLFPASLT 594
            W++  ++C +  V CD T   V +I L +  + G LPP + QL  L +L L  N+ITG L     ++ L  + L DN+ +   P    L   +             P  +P YL                  S S  L   +A+N+TL G + D  NF P L ++ LSYN+LTG  P SL+
Sbjct:   15 WSSATNFCNWTNVKCDPTNSFVTAIDLDSAAVSGTLPPELNQLTQLQSLNLQKNSITGTLPSFQNITTLQQILLDDNSFTS-IPDNFLLGLTNLQTFSISQNYKLSPWEIPNYL------------------SESTNLVNFFASNSTLKGTIPDFFNFFPNLQNLRLSYNDLTGSLPGSLS 176          
BLAST of mRNA_S-firma_F_contig10839.1124.1 vs. uniprot
Match: UPI001CB98978 (receptor-like kinase TMK4 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB98978)

HSP 1 Score: 63.2 bits (152), Expect = 5.520e-8
Identity = 58/202 (28.71%), Postives = 84/202 (41.58%), Query Frame = 1
Query:    4 ILHEFYSALGGANWTNDANWTTTDDYCTYFGVACDLTYDVVSIRLVNNNLQGPLPPVIAQLPALTNLVLSGNNITGQLSFLPLMSGLLYLDLTDNALSGDFPSLANLTAASEXXXXXXXXXXPLPAALPKYLEALYVYXXXXXXXXXX-----GVSGSPRLRVLWAANNTLHGNMTDNFQ--PALTHVDLSYNNLTGLFPAS 588
            ++  F +AL         NW  + D+C++ G+ CD T  V  I L   +L G LP  + QL  L NL                        L +N LSGD PSL+NLT   E           +P      L +L  +                ++ S  L+   A+N ++ G++ D F   P+L ++ LSYNNLTG  P S
Sbjct:   32 VMSTFLTALSPL----PTNWKPSTDFCSWDGIKCDNTKQVTDINLDKLSLSGSLPSNLNQLSQLKNL-----------------------HLQNNKLSGDLPSLSNLTFL-ESVLLDFNNFSSIPQGFFLGLTSLQEFSISDNSNLSPWTIPNDLTESTNLQKFSASNASIIGSIPDIFGKFPSLQNLRLSYNNLTGSLPPS 205          
BLAST of mRNA_S-firma_F_contig10839.1124.1 vs. uniprot
Match: A0A3B7C0B4_9FLAO (Ig-like domain-containing protein n=2 Tax=Aquimarina sp. BL5 TaxID=1714860 RepID=A0A3B7C0B4_9FLAO)

HSP 1 Score: 63.2 bits (152), Expect = 6.260e-8
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    7 LHEFYSALGGANWTNDANWTTTDDYCTYFGVACDLTYDVVSIRLVNNNLQGPLPPVIAQLPALTNLVLSGN 219
            L + Y++  G NWTN+ NW T    C ++GV   +   V+S+ LVNNNL G L P I+ L  LT L+L+ N
Sbjct: 2113 LIDLYNSTNGPNWTNNTNWLTDAPVCDWYGVTV-VEGKVISLSLVNNNLDGILTPSISNLNLLTELILNSN 2182          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10839.1124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00036B865C3.070e-1144.16T9SS type A sorting domain-containing protein n=1 ... [more]
A0A0M9E098_9DELT9.100e-1141.82Putative leucine rich repeat protein (Fragment) n=... [more]
A0A2H3L7N3_9CHLR1.230e-1048.68Uncharacterized protein n=2 Tax=Candidatus Chlorop... [more]
A0A2P6NUN3_9EUKA1.470e-1045.00RHS repeat-associated core domain-containing prote... [more]
A0A7C5MPA3_9BACT7.170e-1045.12Fibronectin type-III domain-containing protein n=1... [more]
A0A7Y1VSS3_9BACT1.090e-933.04Uncharacterized protein (Fragment) n=1 Tax=Saprosp... [more]
A0A1Z5J6P4_FISSO2.350e-936.46Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A022QVH4_ERYGU5.470e-830.94Protein kinase domain-containing protein n=2 Tax=E... [more]
UPI001CB989785.520e-828.71receptor-like kinase TMK4 n=1 Tax=Erigeron canaden... [more]
A0A3B7C0B4_9FLAO6.260e-843.66Ig-like domain-containing protein n=2 Tax=Aquimari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10839contigS-firma_F_contig10839:272..985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog1122179.KB890438_gene1541
PFAMsCBM_4_9,Ig_3,LRR_1,LRR_8
Max annot lvl976|Bacteroidetes
Evalue5.04e-12
EggNOG OGsCOG4886@1|root,COG5184@1|root,COG4886@2|Bacteria,COG5184@2|Bacteria,4NI2K@976|Bacteroidetes
DescriptionPFAM Leucine Rich Repeat
COG categoryG
Hectar predicted targeting categoryother localisation
Exons2
Model size657
Cds size657
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.1007833-CDS-S-firma_F_contig10839:271..6971622815627.1007833-CDS-S-firma_F_contig10839:271..697Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10839 272..697 +
1696949463.398426-CDS-S-firma_F_contig10839:271..6971696949463.398426-CDS-S-firma_F_contig10839:271..697Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10839 272..697 +
1622815627.1122975-CDS-S-firma_F_contig10839:754..9851622815627.1122975-CDS-S-firma_F_contig10839:754..985Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10839 755..985 +
1696949463.412028-CDS-S-firma_F_contig10839:754..9851696949463.412028-CDS-S-firma_F_contig10839:754..985Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10839 755..985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10839.1124.1prot_S-firma_F_contig10839.1124.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10839 272..985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10839.1124.1

>prot_S-firma_F_contig10839.1124.1 ID=prot_S-firma_F_contig10839.1124.1|Name=mRNA_S-firma_F_contig10839.1124.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=219bp
DILHEFYSALGGANWTNDANWTTTDDYCTYFGVACDLTYDVVSIRLVNNN
LQGPLPPVIAQLPALTNLVLSGNNITGQLSFLPLMSGLLYLDLTDNALSG
DFPSLANLTAASEVHLANNRLTGPLPAALPKYLEALYVYNNLLTGPLPAG
VSGSPRLRVLWAANNTLHGNMTDNFQPALTHVDLSYNNLTGLFPASLTTL
PAIEYINFEYNNMVGNVTD
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mRNA from alignment at S-firma_F_contig10839:272..985+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10839.1124.1 ID=mRNA_S-firma_F_contig10839.1124.1|Name=mRNA_S-firma_F_contig10839.1124.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=714bp|location=Sequence derived from alignment at S-firma_F_contig10839:272..985+ (Sphaerotrichia firma ET2_F female)
GACATTTTGCACGAGTTTTACTCCGCGCTTGGCGGCGCCAACTGGACCAA CGACGCCAATTGGACCACCACAGACGACTACTGCACGTATTTTGGGGTGG CGTGCGACTTGACGTACGACGTGGTGTCCATTCGGTTGGTGAACAACAAC CTCCAGGGGCCCCTGCCGCCAGTGATTGCCCAGCTCCCCGCCCTCACCAA CCTGGTGCTGTCCGGTAACAACATTACAGGCCAGCTGTCCTTCCTGCCGC TCATGTCCGGGCTGCTGTACCTTGACCTCACGGACAACGCTCTGTCGGGC GACTTTCCCTCGCTGGCCAACTTGACGGCGGCCTCAGAGGTGCACTTGGC CAACAACAGGCTCACTGGCCCCCTCCCGGCCGCCCTCCCCAAGTACCTTG AAGCCCTGTACGTGTACAACAATCTGGTGCGCTGAATTGTCCCCCCCCTC CCCACGTTCGTGCCCTCACCTTTCCGTTTCCAGTTGACGGGCCCGCTGCC CGCAGGGGTGTCTGGCTCCCCCCGGCTGCGCGTCCTGTGGGCCGCCAACA ACACCCTGCATGGCAACATGACGGACAACTTCCAGCCGGCATTGACGCAC GTAGACCTTTCGTACAACAACCTGACAGGGCTGTTCCCGGCGTCGCTGAC CACCCTGCCCGCCATTGAGTACATCAACTTTGAGTACAACAACATGGTGG GCAACGTCACGGAT
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Coding sequence (CDS) from alignment at S-firma_F_contig10839:272..985+

>mRNA_S-firma_F_contig10839.1124.1 ID=mRNA_S-firma_F_contig10839.1124.1|Name=mRNA_S-firma_F_contig10839.1124.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1314bp|location=Sequence derived from alignment at S-firma_F_contig10839:272..985+ (Sphaerotrichia firma ET2_F female)
GACATTTTGCACGAGTTTTACTCCGCGCTTGGCGGCGCCAACTGGACCAA
CGACGCCAATTGGACCACCACAGACGACTACTGCACGTATTTTGGGGTGG
CGTGCGACTTGACGTACGACGTGGTGTCCATTCGGTTGGTGAACAACAAC
CTCCAGGGGCCCCTGCCGCCAGTGATTGCCCAGCTCCCCGCCCTCACCAA
CCTGGTGCTGTCCGGTAACAACATTACAGGCCAGCTGTCCTTCCTGCCGC
TCATGTCCGGGCTGCTGTACCTTGACCTCACGGACAACGCTCTGTCGGGC
GACTTTCCCTCGCTGGCCAACTTGACGGCGGCCTCAGAGGTGCACTTGGC
CAACAACAGGCTCACTGGCCCCCTCCCGGCCGCCCTCCCCAAGTACCTTG
AAGCCCTGTACGTGTACAACAATCTGGACATTTTGCACGAGTTTTACTCC
GCGCTTGGCGGCGCCAACTGGACCAACGACGCCAATTGGACCACCACAGA
CGACTACTGCACGTATTTTGGGGTGGCGTGCGACTTGACGTACGACGTGG
TGTCCATTCGGTTGGTGAACAACAACCTCCAGGGGCCCCTGCCGCCAGTG
ATTGCCCAGCTCCCCGCCCTCACCAACCTGGTGCTGTCCGGTAACAACAT
TACAGGCCAGCTGTCCTTCCTGCCGCTCATGTCCGGGCTGCTGTACCTTG
ACCTCACGGACAACGCTCTGTCGGGCGACTTTCCCTCGCTGGCCAACTTG
ACGGCGGCCTCAGAGGTGCACTTGGCCAACAACAGGCTCACTGGCCCCCT
CCCGGCCGCCCTCCCCAAGTACCTTGAAGCCCTGTACGTGTACAACAATC
TGTTGACGGGCCCGCTGCCCGCAGGGGTGTCTGGCTCCCCCCGGCTGCGC
GTCCTGTGGGCCGCCAACAACACCCTGCATGGCAACATGACGGACAACTT
CCAGCCGGCATTGACGCACGTAGACCTTTCGTACAACAACCTGACAGGGC
TGTTCCCGGCGTCGCTGACCACCCTGCCCGCCATTGAGTACATCAACTTT
GAGTACAACAACATGGTGGGCAACGTCACGGATTTGACGGGCCCGCTGCC
CGCAGGGGTGTCTGGCTCCCCCCGGCTGCGCGTCCTGTGGGCCGCCAACA
ACACCCTGCATGGCAACATGACGGACAACTTCCAGCCGGCATTGACGCAC
GTAGACCTTTCGTACAACAACCTGACAGGGCTGTTCCCGGCGTCGCTGAC
CACCCTGCCCGCCATTGAGTACATCAACTTTGAGTACAACAACATGGTGG
GCAACGTCACGGAT
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