mRNA_S-firma_F_contig10838.1122.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10838.1122.1
Unique NamemRNA_S-firma_F_contig10838.1122.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10838.1122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10838contigS-firma_F_contig10838:2489..3615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size311
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10838.1122.1prot_S-firma_F_contig10838.1122.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10838 2490..3615 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.9893403-CDS-S-firma_F_contig10838:2489..25761622815626.9893403-CDS-S-firma_F_contig10838:2489..2576Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10838 2490..2576 -
1696949463.3447993-CDS-S-firma_F_contig10838:2489..25761696949463.3447993-CDS-S-firma_F_contig10838:2489..2576Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10838 2490..2576 -
1622815627.0031152-CDS-S-firma_F_contig10838:2844..29641622815627.0031152-CDS-S-firma_F_contig10838:2844..2964Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10838 2845..2964 -
1696949463.3560832-CDS-S-firma_F_contig10838:2844..29641696949463.3560832-CDS-S-firma_F_contig10838:2844..2964Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10838 2845..2964 -
1622815627.0195134-CDS-S-firma_F_contig10838:3281..33431622815627.0195134-CDS-S-firma_F_contig10838:3281..3343Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10838 3282..3343 -
1696949463.3653903-CDS-S-firma_F_contig10838:3281..33431696949463.3653903-CDS-S-firma_F_contig10838:3281..3343Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10838 3282..3343 -
1622815627.0322018-CDS-S-firma_F_contig10838:3575..36151622815627.0322018-CDS-S-firma_F_contig10838:3575..3615Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10838 3576..3615 -
1696949463.3738353-CDS-S-firma_F_contig10838:3575..36151696949463.3738353-CDS-S-firma_F_contig10838:3575..3615Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10838 3576..3615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10838.1122.1

>prot_S-firma_F_contig10838.1122.1 ID=prot_S-firma_F_contig10838.1122.1|Name=mRNA_S-firma_F_contig10838.1122.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=103bp
RPPGGGDSGNTAQGVRSSGVAAIGAGASSTVTVKADVGNMPEEEDQEQHG
DEDPHLSANIEEAGSVNEQPGEYEAAAGESGPSARSEEKEEEGESEEEEE
KRR
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mRNA from alignment at S-firma_F_contig10838:2489..3615-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10838.1122.1 ID=mRNA_S-firma_F_contig10838.1122.1|Name=mRNA_S-firma_F_contig10838.1122.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1127bp|location=Sequence derived from alignment at S-firma_F_contig10838:2489..3615- (Sphaerotrichia firma ET2_F female)
AGACCGCCGGGGGGTGGCGACAGTGGCAACACCGCGCAAGGTGGGTGAAC
GCCGTGACTTACTGCACGAGGCTGTGATGGGGAAGGGCGAGGCGCACCTT
TGCTGAGGATGGGAATACAGGAAAACATGTCCCACCTCTTTACCGCCACA
ATTCTGATCGTTCGACAGCATTTCTGGCGGACGACGGGGTGGCATGACCA
CCAATCAGAACAATTCCCGACCCTTCAATTGTGTCCCCGTCTGCTGCTTG
ATTTGATCGACTTGACGCGCAGGCGTGAGGTCATCAGGTGTAGCGGCAAT
TGGTGCTGGTGCCTCCTCCACCGTGACTGTGAAGGTGAGCGTCAACGTTC
TCCACCGCGCTCAAGTTGGTCGAACATTGAGCGTCTGCATACACCAATTA
AACCTGTATGTACCAACCGTGTTTGGTAGTTTGTTGTGTTGGAGTACCGT
GTGCTGGCAGGTAAAACAGCACGGGGTTACAGCCCGGAGCCATGAACCCT
TTTCTTCCACAACGCGTTCATCCACCACCGCCCCCCCCCCCTCGTACAGG
GGGGAGCAACTTGTCGAAAGATGTCGTGAGTTCATTTCGTCAACATCCGC
AGTAGCTAGCCCGGTGATGAACGATGCCTGTGGGATGCGTCGTTTGACTA
GGCCGACGTAGGAAACATGCCCGAAGAGGAAGACCAAGAGCAACATGGAG
ATGAGGACCCCCACTTGTCAGCAAACATCGAGGAGGCCGGAAGCGTTAAT
GAGCAGCCGGGCGAATACGAGGTGGGTGTTGGTGTTAGATAGATGTGGAG
GTGTTGGCTAGTATGCCGATGTCACGACACTTATTACAGATCGTCTAGAC
GACTGTTTCCTGCGTCGTCGACATTTACCCTTCTATTTAGTCAAAGTGAC
ATGTTGGTCGATATACCAACGCAATGCTTGGTGTGGGTCTTCATGTGTGC
TACCAACATTGGGCTTGGATTGTTCACGCTCGATGTCGCCGCTCCCTAAG
GAATCAACCACATCACTATCGATTGTCTTGTACGAGCAGGCCGCCGCTGG
TGAAAGCGGGCCAAGTGCTAGGAGTGAGGAAAAGGAGGAGGAAGGAGAGT
CTGAAGAGGAGGAGGAAAAGCGGAGGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10838:2489..3615-

>mRNA_S-firma_F_contig10838.1122.1 ID=mRNA_S-firma_F_contig10838.1122.1|Name=mRNA_S-firma_F_contig10838.1122.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=618bp|location=Sequence derived from alignment at S-firma_F_contig10838:2489..3615- (Sphaerotrichia firma ET2_F female)
AGACCGCCGGGGGGTGGCGACAGTGGCAACACCGCGCAAGAGACCGCCGG
GGGGTGGCGACAGTGGCAACACCGCGCAAGGCGTGAGGTCATCAGGTGTA
GCGGCAATTGGTGCTGGTGCCTCCTCCACCGTGACTGTGAAGGCGTGAGG
TCATCAGGTGTAGCGGCAATTGGTGCTGGTGCCTCCTCCACCGTGACTGT
GAAGGCCGACGTAGGAAACATGCCCGAAGAGGAAGACCAAGAGCAACATG
GAGATGAGGACCCCCACTTGTCAGCAAACATCGAGGAGGCCGGAAGCGTT
AATGAGCAGCCGGGCGAATACGAGGCCGACGTAGGAAACATGCCCGAAGA
GGAAGACCAAGAGCAACATGGAGATGAGGACCCCCACTTGTCAGCAAACA
TCGAGGAGGCCGGAAGCGTTAATGAGCAGCCGGGCGAATACGAGGCCGCC
GCTGGTGAAAGCGGGCCAAGTGCTAGGAGTGAGGAAAAGGAGGAGGAAGG
AGAGTCTGAAGAGGAGGAGGAAAAGCGGAGGGCCGCCGCTGGTGAAAGCG
GGCCAAGTGCTAGGAGTGAGGAAAAGGAGGAGGAAGGAGAGTCTGAAGAG
GAGGAGGAAAAGCGGAGG
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