mRNA_S-firma_F_contig10831.1117.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10831.1117.1
Unique NamemRNA_S-firma_F_contig10831.1117.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10831.1117.1 vs. uniprot
Match: A0A7S1C7L7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7L7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 9.980e-25
Identity = 68/150 (45.33%), Postives = 96/150 (64.00%), Query Frame = 1
Query:    1 MEAELRKMPPAQRRRHVDMVSQYKADLGTLRKDLDRAMDSVQREALLAS-NRSAMERKADD---RAATATERVKRSTARLQDASRTVAETEEIGVNVIGGLQEQRETLLRAHDKVTDVNTLTGRARSIIKAIQRRAITNKLVLGLIIFLL 438
            ME E R + P+++RR    +  Y+A+L   R DL+RA     R+AL+A  +R A+ R++     R   AT R+ RSTA L++  RTV ETEE+GV ++G L  QRETLLRAHDKV + N LT RAR ++  I+RRA  N+ +L ++I  L
Sbjct:   63 MELEARSVAPSEKRRLTGRIRTYRAELSAARTDLERAQTRGDRDALMAGGSRDAVSRESASQRGRIEEATARMDRSTAVLEETRRTVMETEEVGVGIMGNLHSQRETLLRAHDKVKETNRLTTRARRVLNNIKRRACYNQALLWVVILFL 212          
BLAST of mRNA_S-firma_F_contig10831.1117.1 vs. uniprot
Match: K3WZD4_GLOUD (V-SNARE domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZD4_GLOUD)

HSP 1 Score: 81.3 bits (199), Expect = 6.280e-16
Identity = 58/148 (39.19%), Postives = 90/148 (60.81%), Query Frame = 1
Query:    1 MEAELRKMPPAQRRRHVDMVSQYKADLGTLRKDLDRAMDSVQREALLASNRSAMERKADDRAATATERVKRSTARLQDASRTVAETEEIGVNVIGGLQEQRETLLRAHDKVTDVNTLTGRARSIIKAIQRRAITNKLVLGLIIFLLVI 444
            M  E+R  PP  R+     ++ Y+ +L  L++DL+RA   + RE       S  +    +R    T R+ RS+ RL+ + R VAETEEIG++V+  L +QRE+LL AH+KV +   +TG AR I++ + RR +TN++VL  +I LL+I
Sbjct:   60 MSIEVRGKPPMLRKAMQAKINLYRDELQGLQRDLERAQ-LMARETKANPRASYNQNAQYERITGNTNRLLRSSQRLESSQRIVAETEEIGISVLDTLAQQRESLLSAHEKVRETREVTGDARRILQRMTRRILTNRIVLYTVIALLLI 206          
BLAST of mRNA_S-firma_F_contig10831.1117.1 vs. uniprot
Match: A0A7S3FIA0_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FIA0_9VIRI)

HSP 1 Score: 78.6 bits (192), Expect = 5.550e-15
Identity = 54/152 (35.53%), Postives = 92/152 (60.53%), Query Frame = 1
Query:    1 MEAELRKMPPAQRRRHVDMVSQYKADLGTLRKD-----LDRAMDSVQREALLASNRSAMERKADDRAATATERVKRSTARLQDASRTVAETEEIGVNVIGGLQEQRETLLRAHDKVTDVNTLTGRARSIIKAIQRRAITNKLVLGLIIFLLV 441
            M+ E R  PP  + R +  +  YKADL  L+KD     + RA D+ + E LL  + SA +++  +R  T T+R++RS+ R+++  RT+ ETEE+GV+++  L +QR+T+  A D +   +    R R +I ++ RR + NK+++  II LL+
Sbjct:   55 MDLEARTQPPEAKGRLLARLRDYKADLNGLKKDAKRLAMPRAGDASRAE-LLGDSASAADQR--NRLLTTTDRLQRSSDRIEEGKRTILETEELGVSILQDLHQQRQTITHARDTLHSTDDNLSRGRRLISSMARRMVQNKIIMYAIILLLI 203          
BLAST of mRNA_S-firma_F_contig10831.1117.1 vs. uniprot
Match: A0A835APB3_9POAL (V-SNARE domain-containing protein n=4 Tax=Panicoideae TaxID=147369 RepID=A0A835APB3_9POAL)

HSP 1 Score: 78.2 bits (191), Expect = 8.190e-15
Identity = 59/161 (36.65%), Postives = 97/161 (60.25%), Query Frame = 1
Query:    1 MEAELRKMPPAQRRRHVDMVSQYKADLGTLRKDLDR-----AMDSVQREALLASNRSAMERKADDRAAT--ATERVKRSTARLQDASRTVAETEEIGVNVIGGLQEQRETLLRAHDKVTDVNTLTGRARSIIKAIQRRAITNKLVLGLIIFLLVICDVLLM 462
            M+ E R + P+ R   +  + +YK+DL  L+  L R     A    + E L +    A+   AD R+    ATER  ++T RL+D+ RT+ ETE++GV+++  L +QR++LLRAH+ + DV+   G++R II  + RR   NK ++GLII +LV+  +++M
Sbjct:   55 MDLEARNLQPSIRAGLLAKIREYKSDLNNLKGALKRITSGNAQQGAREELLESGMADALGVSADQRSRLLRATERQNQTTDRLRDSHRTMLETEDLGVSILHDLSQQRQSLLRAHNVLDDVDDNIGKSRRIIGGMVRRMDRNKWIIGLIIAVLVLAILVIM 215          
BLAST of mRNA_S-firma_F_contig10831.1117.1 vs. uniprot
Match: A0A7R9Y582_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y582_9VIRI)

HSP 1 Score: 77.8 bits (190), Expect = 1.030e-14
Identity = 54/150 (36.00%), Postives = 86/150 (57.33%), Query Frame = 1
Query:    1 MEAELRKMPPAQRRRHVDMVSQYKADLGTLRKDLDRAM---DSVQREALLASNRSAMERKADDRAATATERVKRSTARLQDASRTVAETEEIGVNVIGGLQEQRETLLRAHDKVTDVNTLTGRARSIIKAIQRRAITNKLVLGLIIFLLV 441
            M+ E R   P  +   +  +  YKADL  L+KD  R         R  LL    SA +++  +R  T TER++RS+ R+++  RT+ ETEE+GV+++  L +QR+T+  A D +   +    R R +I ++ RR +TNK+++  IIFLLV
Sbjct:   55 MDLEARTTTPDTKTVLLGRLRDYKADLNGLKKDAKRMSAFAGDASRAELLGDAASASDQR--NRLLTTTERLQRSSDRIEEGKRTILETEELGVSILQDLHQQRQTITHARDTLHSTDDNLSRGRKLISSMARRMVTNKIIMWTIIFLLV 202          
BLAST of mRNA_S-firma_F_contig10831.1117.1 vs. uniprot
Match: A0A425CFQ9_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CFQ9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.490e-14
Identity = 56/154 (36.36%), Postives = 91/154 (59.09%), Query Frame = 1
Query:    1 MEAELRKMPPAQRRRHVDMVSQYKADLGTLRKDLDRAMDSVQREALLASNRSAMERKADDRAATATERVKRSTARLQDASRTVAETEEIGVNVIGGLQEQRETLLRAHDKVTDVNTLTGRARSIIKAIQRRAITNKLVLGLIIFLLV--ICDVL 456
            M  E+R   P  ++     ++ Y+ +L  L +DL+RA    + E  ++S   A ++   +R     +R+ +S+ +L+D  R VAET+E+G+ V+  L +QRE+LL  H+KV +   +T  AR I++ + RR ITN LVL  IIF+L+  IC VL
Sbjct:   86 MTVEMRGRAPHLKKNMQTKINLYRDELQGLIRDLERAQLMAREENTMSST--ANQKSQYERLIKNNDRLTKSSKKLEDTHRIVAETKEVGITVLNTLAQQRESLLGTHEKVRETGAMTTEARRILQRMTRRIITNTLVLYTIIFVLIAAICYVL 237          
BLAST of mRNA_S-firma_F_contig10831.1117.1 vs. uniprot
Match: A0A1D1ZTS4_AUXPR (V-SNARE domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZTS4_AUXPR)

HSP 1 Score: 75.1 bits (183), Expect = 1.180e-13
Identity = 52/149 (34.90%), Postives = 86/149 (57.72%), Query Frame = 1
Query:    1 MEAELRKMPPAQRRRHVDMVSQYKADLGTLRKDLDRA-MDSVQREALLASNRSAMERKAD--DRAATATERVKRSTARLQDASRTVAETEEIGVNVIGGLQEQRETLLRAHDKVTDVNTLTGRARSIIKAIQRRAITNKLVLGLIIFLL 438
            ++ E R +PP   R  +  +  YKAD+  LR D   A   SV+  A L       +  A   DR  TAT+R+ +++ R+Q   + + ETEE+G++V+G LQ QRET+L + D +  V+    R+R+I+ ++ RR + NK+++  I+ LL
Sbjct:   59 LDIEARSLPPVTSRALLQKLKDYKADIAKLRSDAKTAGTSSVESRAELGLGNEYFQTSAGQRDRLLTATDRLGKTSDRIQAGRQQLLETEELGISVLGDLQRQRETILHSRDALAGVDEGISRSRAILSSMSRRIMQNKIIMWGIVALL 207          
BLAST of mRNA_S-firma_F_contig10831.1117.1 vs. uniprot
Match: A0A833T0H8_PHYIN (V-SNARE family protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A833T0H8_PHYIN)

HSP 1 Score: 73.6 bits (179), Expect = 4.570e-13
Identity = 55/148 (37.16%), Postives = 87/148 (58.78%), Query Frame = 1
Query:    1 MEAELRKMPPAQRRRHVDMVSQYKADLGTLRKDLDRAMDSVQREALLASNRSAMERKADDRAATATERVKRSTARLQDASRTVAETEEIGVNVIGGLQEQRETLLRAHDKVTDVNTLTGRARSIIKAIQRRAITNKLVLGLIIFLLVI 444
            M  E+R   P  R+     V+ Y+ +L  L +DL+RA   + RE    S+ +A +    +R     +R+ +S+ +L+D  R VAETEE+G+ V+  L  QRE+LL AH+KV +   +T  AR I++ + RR ITN +VL   IF+L++
Sbjct:   59 MTVEVRGRQPMLRKAMQAKVNMYRDELQGLIRDLERAQ-LMAREGKTTSS-TANQTSQYERLIKNNDRLAKSSKKLEDTHRIVAETEEVGITVLDTLASQRESLLGAHEKVRETGAMTTEARRILQRMTRRIITNTIVLYTTIFVLIV 204          
BLAST of mRNA_S-firma_F_contig10831.1117.1 vs. uniprot
Match: A0A2V0PSN9_9CHLO (V-SNARE domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PSN9_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 4.710e-13
Identity = 51/153 (33.33%), Postives = 89/153 (58.17%), Query Frame = 1
Query:    1 MEAELRKMPPAQRRRHVDMVSQYKADLGTLRKDLDRAM------DSVQREALLASNRSAMERKADDRAATATERVKRSTARLQDASRTVAETEEIGVNVIGGLQEQRETLLRAHDKVTDVNTLTGRARSIIKAIQRRAITNKLVL-GLIIFLL 438
            M+ E R +P  + R     V +Y+ADLG+LR+ L +A       D+ + E  L  +  +      DR   +TER++++T RLQ   + +AETEE+GV+++G L  QRET++ A D +   +    +AR ++ ++ +R + NK+++ G+  FLL
Sbjct:   58 MDMEARSLPADRARGLTSKVKEYRADLGSLREQLKQAAATAGASDAARAELGLGGDYYSTAAGQRDRMLVSTERLQKTTERLQLGKQQLAETEELGVSILGDLARQRETIVSARDTLHGADDNISKARRVLSSMSKRVLANKIIMFGISAFLL 210          
BLAST of mRNA_S-firma_F_contig10831.1117.1 vs. uniprot
Match: W2JIH7_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2JIH7_PHYPR)

HSP 1 Score: 72.8 bits (177), Expect = 5.410e-13
Identity = 55/148 (37.16%), Postives = 87/148 (58.78%), Query Frame = 1
Query:    1 MEAELRKMPPAQRRRHVDMVSQYKADLGTLRKDLDRAMDSVQREALLASNRSAMERKADDRAATATERVKRSTARLQDASRTVAETEEIGVNVIGGLQEQRETLLRAHDKVTDVNTLTGRARSIIKAIQRRAITNKLVLGLIIFLLVI 444
            M  E+R   P  R+     V+ Y+ +L  L +DL+RA   + RE    S+ +A +    +R     +R+ +S+ +L+D  R VAETEE+G+ V+  L  QRE+LL AH+KV +   +T  AR I++ + RR ITN +VL   IF+L++
Sbjct:   30 MTVEVRGRQPMLRKAMQAKVNMYRDELQGLIRDLERAQ-LMAREGKATSS-TANQTSQYERLIKNNDRLTKSSKKLEDTHRIVAETEEVGIAVLDTLASQRESLLGAHEKVRETGAMTTEARRILQRMTRRIITNTIVLYTTIFVLIV 175          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10831.1117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C7L7_9STRA9.980e-2545.33Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
K3WZD4_GLOUD6.280e-1639.19V-SNARE domain-containing protein n=1 Tax=Globispo... [more]
A0A7S3FIA0_9VIRI5.550e-1535.53Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A835APB3_9POAL8.190e-1536.65V-SNARE domain-containing protein n=4 Tax=Panicoid... [more]
A0A7R9Y582_9VIRI1.030e-1436.00Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A425CFQ9_9STRA6.490e-1436.36Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A1D1ZTS4_AUXPR1.180e-1334.90V-SNARE domain-containing protein n=2 Tax=Auxenoch... [more]
A0A833T0H8_PHYIN4.570e-1337.16V-SNARE family protein n=3 Tax=Phytophthora TaxID=... [more]
A0A2V0PSN9_9CHLO4.710e-1333.33V-SNARE domain-containing protein n=1 Tax=Raphidoc... [more]
W2JIH7_PHYPR5.410e-1337.16Uncharacterized protein n=6 Tax=Phytophthora paras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10831contigS-firma_F_contig10831:4431..4892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog65071.PYU1_T010333
PFAMsV-SNARE,V-SNARE_C
Max annot lvl121069|Pythiales
Evalue1.03e-16
EggNOG OGsKOG1666@1|root,KOG1666@2759|Eukaryota,1MAG4@121069|Pythiales
DescriptionSource PGD
COG categoryU
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size462
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.7035868-CDS-S-firma_F_contig10831:4430..48921622815626.7035868-CDS-S-firma_F_contig10831:4430..4892Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10831 4431..4892 -
1696949463.209731-CDS-S-firma_F_contig10831:4430..48921696949463.209731-CDS-S-firma_F_contig10831:4430..4892Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10831 4431..4892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10831.1117.1prot_S-firma_F_contig10831.1117.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10831 4431..4892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10831.1117.1

>prot_S-firma_F_contig10831.1117.1 ID=prot_S-firma_F_contig10831.1117.1|Name=mRNA_S-firma_F_contig10831.1117.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=154bp
MEAELRKMPPAQRRRHVDMVSQYKADLGTLRKDLDRAMDSVQREALLASN
RSAMERKADDRAATATERVKRSTARLQDASRTVAETEEIGVNVIGGLQEQ
RETLLRAHDKVTDVNTLTGRARSIIKAIQRRAITNKLVLGLIIFLLVICD
VLLM
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mRNA from alignment at S-firma_F_contig10831:4431..4892-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10831.1117.1 ID=mRNA_S-firma_F_contig10831.1117.1|Name=mRNA_S-firma_F_contig10831.1117.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=462bp|location=Sequence derived from alignment at S-firma_F_contig10831:4431..4892- (Sphaerotrichia firma ET2_F female)
ATGGAGGCGGAGCTGCGCAAGATGCCACCTGCGCAGCGGCGCCGGCACGT GGACATGGTGTCACAGTACAAGGCGGACTTGGGGACGCTGCGGAAGGACT TGGACCGGGCCATGGATTCGGTGCAGCGGGAGGCGCTTCTGGCGTCTAAC CGGTCTGCCATGGAGCGAAAGGCTGACGACAGGGCCGCCACCGCCACGGA ACGCGTGAAGCGCAGCACGGCCCGCCTGCAGGATGCGTCTCGGACGGTGG CAGAAACAGAGGAAATCGGGGTCAACGTCATTGGGGGACTGCAGGAGCAG CGGGAGACCCTGCTCCGTGCCCACGACAAAGTCACCGACGTGAACACCCT CACGGGGCGGGCGCGGTCCATCATCAAGGCCATCCAGCGGCGTGCCATCA CCAACAAGCTGGTCCTGGGCCTCATTATCTTCTTGCTAGTCATCTGCGAT GTGTTGCTGATG
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Coding sequence (CDS) from alignment at S-firma_F_contig10831:4431..4892-

>mRNA_S-firma_F_contig10831.1117.1 ID=mRNA_S-firma_F_contig10831.1117.1|Name=mRNA_S-firma_F_contig10831.1117.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=924bp|location=Sequence derived from alignment at S-firma_F_contig10831:4431..4892- (Sphaerotrichia firma ET2_F female)
ATGGAGGCGGAGCTGCGCAAGATGCCACCTGCGCAGCGGCGCCGGCACGT
GGACATGGTGTCACAGTACAAGGCGGACTTGGGGACGCTGCGGAAGGACT
TGGACCGGGCCATGGATTCGGTGCAGCGGGAGGCGCTTCTGGCGTCTAAC
CGGTCTGCCATGGAGCGAAAGGCTGACGACAGGGCCGCCACCGCCACGGA
ACGCGTGAAGCGCAGCACGGCCCGCCTGCAGGATGCGTCTCGGACGGTGG
CAGAAACAGAGGAAATCGGGGTCAACGTCATTGGGGGACTGCAGGAGCAG
CGGGAGACCCTGCTCCGTGCCCACGACAAAGTCACCGACGTGAACACCCT
CACGGGGCGGGCGCGGTCCATCATCAAGGCCATCCAGCGGCGTGCCATCA
CCAACAAGCTGGTCCTGGGCCTCATTATCTTCTTGCTAGTCATCTGCGAT
GTGTTGCTGATGATGGAGGCGGAGCTGCGCAAGATGCCACCTGCGCAGCG
GCGCCGGCACGTGGACATGGTGTCACAGTACAAGGCGGACTTGGGGACGC
TGCGGAAGGACTTGGACCGGGCCATGGATTCGGTGCAGCGGGAGGCGCTT
CTGGCGTCTAACCGGTCTGCCATGGAGCGAAAGGCTGACGACAGGGCCGC
CACCGCCACGGAACGCGTGAAGCGCAGCACGGCCCGCCTGCAGGATGCGT
CTCGGACGGTGGCAGAAACAGAGGAAATCGGGGTCAACGTCATTGGGGGA
CTGCAGGAGCAGCGGGAGACCCTGCTCCGTGCCCACGACAAAGTCACCGA
CGTGAACACCCTCACGGGGCGGGCGCGGTCCATCATCAAGGCCATCCAGC
GGCGTGCCATCACCAACAAGCTGGTCCTGGGCCTCATTATCTTCTTGCTA
GTCATCTGCGATGTGTTGCTGATG
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