mRNA_S-firma_F_contig1083.1116.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1083.1116.1
Unique NamemRNA_S-firma_F_contig1083.1116.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1083.1116.1 vs. uniprot
Match: A0A6H5JI30_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI30_9PHAE)

HSP 1 Score: 355 bits (910), Expect = 6.390e-100
Identity = 170/195 (87.18%), Postives = 186/195 (95.38%), Query Frame = 1 
Query:  301 RFALIKKKYAHCFHLPDKGGRVTYYERPGMSDFAEMRKVGITKADLLDHYVYCMEYLWQVLQPRQSQRITIIIDLAGVKFRDLVGESLAFLKTSVGMMSRHYPQRSFKIMILNAPSFFNSVFALVKPMLNEATKKKIDLLPVANVGEEMLKVIPAEHLPLHYGGTGEADLGESPAELALLAHVQKVLEENGQTMQ 885
            +FALIK KYAHCFHLPDK GRVTYYERPGMSD AE++++GITK++LLDHYVYCME+LW+VLQPRQSQRITI+IDLAGV+FRDLVGESLAFLKTSVGMMSRHYPQRSFKIMILNAPSFFNSVFALVKPMLNEATKKKIDLLPVANVG+EMLKVIP+EHLPLHYGG GE  LG SP ELA+LAHV+KVL ENGQ+MQ
Sbjct: 1403 KFALIKSKYAHCFHLPDKDGRVTYYERPGMSDIAELKRLGITKSELLDHYVYCMEFLWKVLQPRQSQRITIVIDLAGVRFRDLVGESLAFLKTSVGMMSRHYPQRSFKIMILNAPSFFNSVFALVKPMLNEATKKKIDLLPVANVGDEMLKVIPSEHLPLHYGGAGEVALGSSPQELAMLAHVEKVLAENGQSMQ 1597
[Close]
BLAST of mRNA_S-firma_F_contig1083.1116.1 vs. uniprot
Match: A0A835YPD3_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPD3_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.240e-51
Identity = 90/196 (45.92%), Postives = 131/196 (66.84%), Query Frame = 1 
Query:  301 RFALIKKKYAHCFHLPDKGGRVTYYERPGMSDFAEMRKVGITKADLLDHYVYCMEYLWQVLQPRQSQRITIIIDLAGVK--FRDLVGESLAFLKTSVGMMSRHYPQRSFKIMILNAPSFFNSVFALVKPMLNEATKKKIDLLPVANVGEEMLKVIPAEHLPLHYGGTGEADLGESPAELALLAHVQKVLEENGQTM 882
            +F LIK  Y  CFHLPD  G + YYE PG  + A ++  G+ + DL  HY YCME+LW+ LQPR+  ++TI+ D  G+K  +++L GE+ +FLK++V M+S HYP RSFKI+ILNAPS  N  +  +K ++ + T+ KI ++P + +  E+L++IP E+LP  YGGT    LG+SPAE++L AHV   L+     M
Sbjct:   73 QFDLIKHFYKFCFHLPDCNGHMVYYEMPGQMNMAALKDYGVEREDLRRHYCYCMEFLWRFLQPREVDKLTIVFDCEGLKVNYQELRGETFSFLKSTVSMLSAHYPNRSFKIVILNAPSALNLFYGALKSIIPQRTRDKISVIPPSQMATELLQIIPPENLPPQYGGTCTIPLGQSPAEVSLRAHVMTELQRTNSDM 268
[Close]
BLAST of mRNA_S-firma_F_contig1083.1116.1 vs. uniprot
Match: A0A4D9D3L4_9STRA (CRAL-TRIO domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3L4_9STRA)

HSP 1 Score: 160 bits (405), Expect = 2.230e-36
Identity = 82/180 (45.56%), Postives = 111/180 (61.67%), Query Frame = 1 
Query:  301 RFALIKKKYAHCFHLPDKGGRVTYYERPGMSDFAEMRKVGITKADLLDHYVYCMEYLWQVLQPRQSQRITIIIDLAGVKFRDLVGESLAFLKTSVGMMSRHYPQRSFKIMILNAPSFFNSVFALVKPMLNEATKKKIDLLPVANVGE-EMLKVIPAEHLPLHYGGTGEADLGESPAELAL 837
            +F+LIK+ Y   FH  DK G V +YE  G     E+ + G++ +DL +H +   E+LW VLQP QS R+T+++DL GV   D+ GE +   K +VG+ S HYP RS + +IL  P +FN +F  VKPMLNE T+KKI  L    V +  ML+ I +E LP  YGG  E  LGESP E+ L
Sbjct:  895 KFSLIKRHYPQAFHFRDKEGHVCFYELLGRLQVGELLRQGVSLSDLTEHVILQQEFLWGVLQPEQSDRVTLVLDLKGVSLADVTGEVVNVAKMAVGLTSTHYPARSCRTLILFVPGWFNLIFRFVKPMLNEDTRKKIVFLDEGAVRQGAMLEYIDSEFLPKEYGGKCEVPLGESPFEIQL 1074
[Close]
BLAST of mRNA_S-firma_F_contig1083.1116.1 vs. uniprot
Match: A0A7S2AKR7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AKR7_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.610e-36
Identity = 74/196 (37.76%), Postives = 114/196 (58.16%), Query Frame = 1 
Query:  304 FALIKKKYAHCFHLPDKGGRVTYYERPGMSDFAEMRKVGITKADLLDHYVYCMEYLWQVLQPRQSQRITIIIDLAGVKFRDLVGESL-AFLKTSVGMMSRHYPQRSFKIMILNAPSFFNSVFALVKPMLNEATKKKIDLLPVANVGEEMLKVIPAEHLPLHYGGTGEADLGESPAELALLAHVQKVLEENGQTMQT 888
            FAL+K  Y H +H  D+ G + YYE PG  D   ++  GIT    +DH +Y  E+LW+ LQP +  R+T +IDL GV    +  ++L + +K  V     HYP+RS+KI++LN P++F ++F  VKP+LN+  K KI++     V   MLK+I  +++P  YGG+   +LG    EL L  HV + + +    + T
Sbjct:  171 FALLKNCYPHFYHGRDREGNIVYYECPGGLDIDRLKTAGITCEKFVDHVMYQQEFLWRKLQPSEEDRVTAVIDLGGVNSMFIFNKALISIVKACVVTTGAHYPERSYKILVLNVPNWFGTLFGFVKPLLNDVQKAKINIFRQHEVHSGMLKIIDDDNIPTAYGGSSPDELGNWEGELTLTTHVLETMRKANVELNT 366
[Close]
BLAST of mRNA_S-firma_F_contig1083.1116.1 vs. uniprot
Match: A0A7S0C1G9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C1G9_9STRA)

HSP 1 Score: 138 bits (347), Expect = 6.390e-31
Identity = 73/199 (36.68%), Postives = 111/199 (55.78%), Query Frame = 1 
Query:  304 FALIKKKYAHCFHLPDKGGRVTYYERPGMSDFAEMRKVGITKADLLDHYVYCMEYLWQVLQPRQSQRITIIIDLAGVKFRDLVGESLAFLKTSVGMMSRHYPQRSFKIMILNAPSFFNSVFALVKPMLNEATKKKIDLLPVANVG--------EEMLKVIPAEHLPLHYGGTGEADLGESPAELALLAHVQKVLEENGQ 876
            F LIK+ Y H FHL        YYE+P   +  E++  GIT   LL HY +  E++WQV++P    +   IIDL G+  RD +GE + F++ +    S+HYP+RS  I + NAP +FN++++++KP+L+  T  KI +LP +  G         E++  I   ++P  YGG     LG+SP E  L   V K  E +G+
Sbjct:  232 FQLIKEHYPHYFHLRGYNNEPVYYEKPARMNLKELKAAGITMDILLRHYSFVTEFMWQVIEPCDGSKNIYIIDLDGITIRDFMGEVIKFVRKASSFTSQHYPERSGSIFVFNAPIWFNTIWSIIKPILDPVTLTKIRILPKSKKGMQGKQQMFNELVTRIDPRNIPPEYGGYS-MPLGQSPEEQMLQDLVLKNQERHGK 429
[Close]
BLAST of mRNA_S-firma_F_contig1083.1116.1 vs. uniprot
Match: A0A6H5K979_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K979_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.480e-30
Identity = 77/211 (36.49%), Postives = 117/211 (55.45%), Query Frame = 1 
Query:  238 WYMTELCVGVARPPFLVPCRQRFALIKKKYAHCFHLPDKGGRVTYYERPGMSDFAEMRKVGITKADLLDHYVYCMEYLWQVLQP--RQSQRITIIIDLAGVKFRDLVGESLAFLKTSVGMMSRHYPQRSFKIMILNAPSFFNSVFALVKPMLNEATKKKIDLL--PVANVGEEMLKVIPAEHLPLHYGGTGEADLGESPAELALLAHVQKV 858
            W   E    V R P     +  F LIK+ Y H  H   + G   + E PG  D   +R  G++   L  HYV+  EY+W VL+P     Q +T++ D+ G+  RDL GE+L F+K +  ++  HY +RS ++ I+NAPS+F+ ++ +++PMLNE T+ KI ++      +   +L+ I  E+LP  YGGT   DLGES  E  L A+V  +
Sbjct:  326 WRAKERIDEVLREP-----QPHFELIKRHYPHYIHRRARNGCPVWIELPGRIDLPAIRSAGVSPEALQRHYVFVTEYMWGVLEPDFENGQAVTVL-DVQGLGMRDLAGEALGFVKQATAIIQDHYVERSNRMFIVNAPSYFSLIWRVIRPMLNERTQAKIGIINTDAKKIAAALLECIAPENLPRQYGGTCPLDLGESEEETDLRAYVASI 530
[Close]
BLAST of mRNA_S-firma_F_contig1083.1116.1 vs. uniprot
Match: D8LBN1_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN1_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 3.010e-30
Identity = 77/211 (36.49%), Postives = 117/211 (55.45%), Query Frame = 1 
Query:  238 WYMTELCVGVARPPFLVPCRQRFALIKKKYAHCFHLPDKGGRVTYYERPGMSDFAEMRKVGITKADLLDHYVYCMEYLWQVLQP--RQSQRITIIIDLAGVKFRDLVGESLAFLKTSVGMMSRHYPQRSFKIMILNAPSFFNSVFALVKPMLNEATKKKIDLL--PVANVGEEMLKVIPAEHLPLHYGGTGEADLGESPAELALLAHVQKV 858
            W   E    V R P     +  F LIK+ Y H  H   + G   + E PG  D   +R  G++   L  HYV+  EY+W VL+P     Q +T++ D+ G+  RDL GE+L F+K +  ++  HY +RS ++ I+NAPS+F+ ++ +++PMLNE T+ KI ++      +   +L+ I  E+LP  YGGT   DLGES  EL L  +V  +
Sbjct:  328 WRAKERIDEVLREP-----QPHFELIKRHYPHYIHRRARNGCPVWIELPGRIDLPAIRSAGVSPEALQRHYVFVTEYMWGVLEPDFENGQAVTVL-DVQGLGMRDLAGEALGFVKQATAIVQDHYVERSNRMFIVNAPSYFSLIWRVIRPMLNERTQAKIGIINTDAKKIAAALLECIAPENLPRQYGGTCPLDLGESEEELDLRTYVASI 532
[Close]
BLAST of mRNA_S-firma_F_contig1083.1116.1 vs. uniprot
Match: A0A833T3M2_PHYIN (CRAL/TRIO domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T3M2_PHYIN)

HSP 1 Score: 131 bits (330), Expect = 6.780e-30
Identity = 70/171 (40.94%), Postives = 100/171 (58.48%), Query Frame = 1 
Query:  313 IKKKYAHCFHLPDKGGRVTYYERPGMSDFAEMRKVGITKADLLDHYVYCME----YLWQVLQP------RQSQRITIIIDLAGVKFRDLVGESLAFLKTSVGMMSRHYPQRSFKIMILNAPSFFNSVFALVKPMLNEATKKKIDLLPVANVGEEMLKVIPAEHLPLHYGGT 795
            IK  Y    H  DK G   Y E+ G    A+++K+G++   L  HY++ ME    Y  Q + P       ++Q++ II+D  G+  RD+ GE   F++   G+M RHYPQRSFKI I+N PS+F   +  VKP+LNEAT+ K ++L  +     +LK I AE+LPL YGGT
Sbjct:   72 IKTHYTQFLHKHDKLGHPLYIEKVGSIKIAQLKKLGVSLDTLFKHYLFAMEFALKYAAQHMCPCDACAASETQKMCIILDARGIGMRDMGGEVFEFIRRCTGVMQRHYPQRSFKIFIVNVPSWFGMAWKGVKPLLNEATRAKTNILTDSETATALLKFIDAENLPLEYGGT 242
[Close]
BLAST of mRNA_S-firma_F_contig1083.1116.1 vs. uniprot
Match: A0A662WMZ0_9STRA (CRAL-TRIO domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMZ0_9STRA)

HSP 1 Score: 132 bits (331), Expect = 8.810e-30
Identity = 71/197 (36.04%), Postives = 108/197 (54.82%), Query Frame = 1 
Query:  313 IKKKYAHCFHLPDKGGRVTYYERPGMSDFAEMRKVGITKADLLDHYVYCMEYLWQ----------VLQPRQSQRITIIIDLAGVKFRDLVGESLAFLKTSVGMMSRHYPQRSFKIMILNAPSFFNSVFALVKPMLNEATKKKIDLLPVANVGEEMLKVIPAEHLPLHYGGTGEADLG---ESPAELALLAHVQKVLE 864
            IK  Y    H  DK G   Y+E+ G  +  +++K GI + DL  HY++ ME+  +                +Q++ I++D  G+  RD+ GE+  F++   G+M RHYPQRSFKI  +N PS+F   +  VKP+LNEAT+ K ++L  +     +L+ I AE+LP+ YGG+     G    S  +L   A V+ VLE
Sbjct:  108 IKTHYTQFLHKHDKLGHPLYFEKIGSINIGQLKKAGIAQEDLFRHYLFAMEFTLKYAAHELCQCDACATSDTQKLCIVLDARGIGMRDMGGEAFEFIRKCTGVMQRHYPQRSFKIFFVNVPSWFGMAWKGVKPLLNEATRAKTNILTESETAAALLEFIDAENLPVEYGGSCSCPGGCATNSAYQLLQKALVESVLE 304
[Close]
BLAST of mRNA_S-firma_F_contig1083.1116.1 vs. uniprot
Match: A0A7S2WJ12_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WJ12_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.190e-29
Identity = 73/190 (38.42%), Postives = 108/190 (56.84%), Query Frame = 1 
Query:  298 QRFALIKKKYAHCFHLPDKGGRVTYYERPGMSDFAEMRKVGITKADLLDHYVYCMEYLWQVLQPRQSQRITIIIDLAGVKFRDLVGESLAFLKTSVGMMSRHYPQRSFKIMILNAPSFFNSVFALVKPMLNEATKKKIDLLPVANVGEEMLKVIPAEHLPLHYGGTGEADLGESPAELALLAHVQKVLEE 867
            Q + ++K    + +    K G   Y + PG      +RK G+   DLL H+ Y  E+LW V++P Q  R   I+DL G+   D VGE+  F+K ++ + S HYP+R+ KI I+NAP FF+ +++++KP L+E TKKKI L       E +L+ I    LP+ YGG  E  LG S  +  L +HV +VL E
Sbjct:  694 QYYHVLKDNLPNYYMGRGKLGHPVYIDCPGGVKMKALRKAGVKLTDLLFHFTYSTEFLWNVIEPSQDGRTISILDLEGIGMFDFVGEATDFVKRTIALSSEHYPERARKIFIINAPRFFSGIWSVIKPWLDEETKKKIGLFRTGYT-EALLEEIDVSVLPVKYGGKNETPLGSSDEDRLLESHVCRVLLE 882
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1083.1116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI30_9PHAE6.390e-10087.18CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A835YPD3_9STRA1.240e-5145.92CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
A0A4D9D3L4_9STRA2.230e-3645.56CRAL-TRIO domain-containing protein n=2 Tax=Monodo... [more]
A0A7S2AKR7_9STRA3.610e-3637.76Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0C1G9_9STRA6.390e-3136.68Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6H5K979_9PHAE2.480e-3036.49CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D8LBN1_ECTSI3.010e-3036.49CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A833T3M2_PHYIN6.780e-3040.94CRAL/TRIO domain n=1 Tax=Phytophthora infestans Ta... [more]
A0A662WMZ0_9STRA8.810e-3036.04CRAL-TRIO domain-containing protein (Fragment) n=1... [more]
A0A7S2WJ12_9STRA1.190e-2938.42Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1083contigS-firma_F_contig1083:20447..24434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog65071.PYU1_T011281
PFAMsCRAL_TRIO
Max annot lvl121069|Pythiales
Evalue1.11e-40
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota,1MDQ7@121069|Pythiales
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_000100.2
DescriptionDomain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
COG categoryT
Hectar predicted targeting categoryother localisation
Exons4
Model size2966
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1083.1116.1prot_S-firma_F_contig1083.1116.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1083 20606..22362 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.6062946-UTR-S-firma_F_contig1083:20446..206051622815626.6062946-UTR-S-firma_F_contig1083:20446..20605Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1083 20447..20605 +
1696949463.1476316-UTR-S-firma_F_contig1083:20446..206051696949463.1476316-UTR-S-firma_F_contig1083:20446..20605Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1083 20447..20605 +
1622815626.6709223-UTR-S-firma_F_contig1083:22362..244341622815626.6709223-UTR-S-firma_F_contig1083:22362..24434Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1083 22363..24434 +
1696949463.2002137-UTR-S-firma_F_contig1083:22362..244341696949463.2002137-UTR-S-firma_F_contig1083:22362..24434Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1083 22363..24434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.620355-CDS-S-firma_F_contig1083:20605..209231622815626.620355-CDS-S-firma_F_contig1083:20605..20923Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 20606..20923 +
1696949463.1610346-CDS-S-firma_F_contig1083:20605..209231696949463.1610346-CDS-S-firma_F_contig1083:20605..20923Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 20606..20923 +
1622815626.633252-CDS-S-firma_F_contig1083:21218..213651622815626.633252-CDS-S-firma_F_contig1083:21218..21365Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 21219..21365 +
1696949463.171338-CDS-S-firma_F_contig1083:21218..213651696949463.171338-CDS-S-firma_F_contig1083:21218..21365Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 21219..21365 +
1622815626.6456969-CDS-S-firma_F_contig1083:21905..220821622815626.6456969-CDS-S-firma_F_contig1083:21905..22082Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 21906..22082 +
1696949463.1824644-CDS-S-firma_F_contig1083:21905..220821696949463.1824644-CDS-S-firma_F_contig1083:21905..22082Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 21906..22082 +
1622815626.6555598-CDS-S-firma_F_contig1083:22269..223621622815626.6555598-CDS-S-firma_F_contig1083:22269..22362Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 22270..22362 +
1696949463.1916337-CDS-S-firma_F_contig1083:22269..223621696949463.1916337-CDS-S-firma_F_contig1083:22269..22362Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 22270..22362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1083.1116.1

>prot_S-firma_F_contig1083.1116.1 ID=prot_S-firma_F_contig1083.1116.1|Name=mRNA_S-firma_F_contig1083.1116.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=245bp
MDVCVAPVYVRGPIYVFANSTCRHVYWYMTELCVGVARPPFLVPCRQRFA
LIKKKYAHCFHLPDKGGRVTYYERPGMSDFAEMRKVGITKADLLDHYVYC
MEYLWQVLQPRQSQRITIIIDLAGVKFRDLVGESLAFLKTSVGMMSRHYP
QRSFKIMILNAPSFFNSVFALVKPMLNEATKKKIDLLPVANVGEEMLKVI
PAEHLPLHYGGTGEADLGESPAELALLAHVQKVLEENGQTMQTS*
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mRNA from alignment at S-firma_F_contig1083:20447..24434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1083.1116.1 ID=mRNA_S-firma_F_contig1083.1116.1|Name=mRNA_S-firma_F_contig1083.1116.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3988bp|location=Sequence derived from alignment at S-firma_F_contig1083:20447..24434+ (Sphaerotrichia firma ET2_F female)
GAGCGGCAAACCCAGAGCGTACATTGATGTTAGCGCATGATGTACATACA
AACACGCTGCCTTTGATCACGTTGGTCTTGTGCTATCTGCCATCTGCACA
AAACGGCCCCCCCTTGACGTGATTGGACACTTGACACCACATCGTCCAAA
ATCGATGTGATGGATGTCTGTGTTGCACCCGTGTATGTGCGAGGACCTAT
ATATGTATTCGCGAACAGTACATGTCGGCATGTATACTGGTACATGACAG
AGTTGTGTGTGGGGGTCGCCCGCCCCCCTTTTCTGGTGCCGTGCCGCCAA
AGGTTCGCGCTGATCAAGAAGAAGTATGCGCACTGCTTCCACCTCCCGGA
CAAGGGAGGGCGGGTGACGTACTACGAGAGGCCTGGCATGTCCGACTTTG
CCGAGATGAGGAAGGTCGGCATCACCAAGGCGGACCTGTTGGACCACTAC
GTCTATTGCATGGAATACCTCTGGCAGGTACCTATGTACGATACGCATGT
ACGACAGTCAAGCTCCTCGGCTGCCGTGCTCGCGCTGGTGCTGCTGCCGC
TGTCGCCGTCGTCAATGTATGTCGGTTTTGGGAGATTTTCCGATTTCGGA
TGTCCTGATTCGGCGGTTCTGCAGGTTTGCTCCCCGCTTCAGCTTCTCCG
GCTCTGAGCGGGAACAGTCGTAGACCCTTTCGTGAGGGGCCGTGACTGGT
TTGAGAGTCCTGTCCTCTGTCCTGTTTGAGTTTTCTGGTTCTCTGCGTTT
GCGTTTGCGTTTGCGTTCACAGGTGCTTCAGCCCAGGCAGAGCCAGCGTA
TCACGATCATCATCGACCTGGCGGGGGTGAAGTTCAGAGACCTCGTCGGC
GAGTCTTTGGCGTTTCTCAAGACCAGCGTCGGAATGATGTCGAGGCATTA
CCCGCAGCGGTCCTTCAAGGTGCCACACAAACGTTGAAAACCGTGCTTTG
CTTGTATTCTCGCTTGGCCGTGACTGCTCTTCTCATCGTCAGGATGTCCG
CAGCATTTCGACGTTCTCGATGTCGACTTTTGATCTAGTGCGGTTGAAGG
GTCCCGTCTGTCCCGTCGTTACTGCCCACTCCATGGTGGTACGTGGACTG
CGTGTTTTTATGTGCTATAAGTGATTGTTACTCAGCGTTTTTCCCGTTCT
TTACCTGTTAAACCATGGGCAGTTTTGGTAGTATCGGAGATGCAGGTGAT
GCGATGTTGCTTCGTCAGTCGTCACCTACATCGTAGTTGAGGTACATACA
AGTACGGTGTTTTCCCTCTCGCCGGCGCGAAAAGCTGACTACTGATTGAC
CACCTGCGTGTGATGTTTGCTTTTAGCTTGTTGAACGTGTAGGGTGTGAG
TGGCATGGTCCCCGCGAGCTTGCTGTTGGACAAATTAGTCCAAAATCGAG
GTTTGTGAGCGTCTTAACTGATTACTCCCTCGCTGCTTTCGTTCCTTTGC
GGTTCGCAGATTATGATCTTGAACGCGCCTTCGTTCTTCAACTCGGTCTT
CGCCCTGGTGAAACCCATGTTGAACGAAGCGACCAAGAAAAAGATCGACC
TGCTGCCCGTCGCCAACGTGGGGGAGGAGATGCTCAAGGTTATCCCCGCC
GAACACCTACCTCTGCACTACGGGGGGACTGGGGAGGTGAGGACGGATCT
AGGTAGATTTTTTTCGGTCTTCGGTTGTTTCTACTGGCCATGCTGTTGTC
GTTAGTTGTCGCCGCTGGTTGTCGGTTTGGTACGGTTTGATGCGGGTCTG
ATGGCACCTGCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTTTG
CTTGCTCTTCGTCCTTCGACCAGGCTGATTTGGGAGAATCTCCTGCGGAG
CTGGCCTTGCTGGCGCACGTGCAAAAGGTGTTGGAGGAGAACGGCCAAAC
GATGCAGACGTCCTAAATCCTAAATTACACCGGCAGCGATCGCATATCAT
GTACGTTTCTTTTTGCCCAGGCCAATCCAACGGCGGCGAACCATAAGGTG
CAACACCATAACCCTAAAGTAGCGTGAGAGACGCCGTTTGCATTTGCATT
TGCGTTTGTTGCCCGACGAGTCAAGTCCAAGCGCTGAAGGGAAGCGCTCT
AGAGCCATGGAGATGGGGGGGAGTTTTGAAAACTTTCTGCGTAAGGTGGC
AGGTCGTATGTGGGTGGTACGTACGTGGTATTTTTATGCCTGGGGCACAT
TTTTGCTGTCTATCTTTTGATTCGGTTGGTTATGTTCGGTCATCGGTCCA
TAAAAGGCGGTAGAGGAGGGGGTCGGGCTTTGGGAGTCGGGCTTTGGGAG
AGAATGATAGAACCACGAGATATCGGGCGTTATAGTAATGGTACTTTACA
CGGGTTTTCGGAAGTCGAAGGTCGAAGCCGGAACGGTATGTTTTTCGTTG
CTCGCCTCGCAAGGGCCAATGCGTTACAACACGCGCATTCGCACCTCCAG
CCGTGACGTAAAGTAAGTCAAGTGCACCCTGTACATTTTGCCGGGACACA
GAGTCCACTGTTGACTCGGGTGGCTTTCTAACGGCCCGCCGAACCTGACG
GCATTGTTGCACTGGTTGGCTCTTTGGGCGTGTGCATGTTGCGGCAATGA
CCTTCACCGCGGACGGTGTCGAGTTTTTCGTTCGCTTGAGGTGATGATGA
AAGCCCGAACAATAATTTTGTGGGTCTTGTGCGTTTGGGCTGTGGCGTCA
TGACAAAGCGTGGAGTGGTGGGACAAGGACAAGCGCGCCCGCACCACCAA
GAGCATTTTTTGTGCTCAGGTCGCAAGATATTCTCTCATCTTTTTCTCTT
CTCTAGTCTACAGACTTGGTTCCCAATTTTTGTCGTCCCGGAAGCGTCTC
TGATGTGCACTTCGAAGCATATGTCAACTGAAATAAGGGCGATTGCACCA
AGACTCAAGTATCCTAGAGAGCACCAGCACCAACACCAACACCAACACCG
GGGTTTGGGTTGGCAAGGTTGGTATGTATCTAGTATCTGCCGCGCCATGG
TTGACAAGTATAACAAGACGACATTGTAGGGATAATGAGGGGGTGGAGGC
AGAGCGTGCGGTAAGGTAATGGTAGTGCTAACCGTAAAACACTGAAGTGG
AAGGTCTACAGCTTCTTCGAGTGCCGTACTGTACCAGAATGGTCTTTATA
GCGGAACCGTGTGTGTCCGTGCTTTTGAATCTTGTGAGGAAGTGGTCTGT
TAGGGCTTGCGGCGTATGCCAGGCAAGCCCGAAGCTTCAGCCGTGTGCGT
GCGCGCGATTGTGTTTTCTAGGACGTTCGAACAACGGTTACGATCGATCG
CGTTTATTTGTTTAGTTTTCTACGAGTGAGTGTTGTCGCCTCGGCTTTGG
AACGGATGATAAATCAGGGGAGAGCGGATGGGTGATCGGCTAGGTTAGGC
TAGGTCATCTCCTTCTTGGAAGGTTATGCTCGGACGTGAGGTATCTGCTG
CCTTCGCGTTTGTTCATGGCGTTCAGGGTCTCGGTTTTTGCTGGGAGGTG
AAAACGATTGGAGATGCCTGGCGGCATATGGTGCATGTGTTGGCGCTGGC
TCAGGAAAGTGAATGCTGTATGTCGCGGCAGGGAGTACGTGCGAAATTGT
TTGTGGATATGTGCTCCGGTGGGGAGAGGAGGGAGCGAGGTGGAGGCGGG
AGGGTTTGGGGAGTTTTTGTACATTTGTTGAGAATGTTTTTCAGTTTATC
TTTTATGTAATCTGCCGTATTCGTGCTCTTCTTACTGCGCGTAGTGGTGT
GGGTGTGTCAGTGTCAGTTTTTGGTGATGGATTTAGTCAGTTTAACCCTG
GCGAAAGGCTGCTCTTAGAAGTTCGTTTTTCTTCTTCCCCTGTCGTTATG
TGTGGGTAGTTCTAATCGACCAAGTTTATTTTCTGTAATCTGTTAGGCGA
GTTGCATTGTACCAACTTGGTTTAGTCTAAAGATAAAAGAAGGATCGGGA
TCCAATTACTAAACCCAACAATTTCGGCTGGATATTGT
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Coding sequence (CDS) from alignment at S-firma_F_contig1083:20447..24434+

>mRNA_S-firma_F_contig1083.1116.1 ID=mRNA_S-firma_F_contig1083.1116.1|Name=mRNA_S-firma_F_contig1083.1116.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1470bp|location=Sequence derived from alignment at S-firma_F_contig1083:20447..24434+ (Sphaerotrichia firma ET2_F female)
ATGGATGTCTGTGTTGCACCCGTGTATGTGCGAGGACCTATATATGTATT
CGCGAACAGTACATGTCGGCATGTATACTGGTACATGACAGAGTTGTGTG
TGGGGGTCGCCCGCCCCCCTTTTCTGGTGCCGTGCCGCCAAAGGTTCGCG
CTGATCAAGAAGAAGTATGCGCACTGCTTCCACCTCCCGGACAAGGGAGG
GCGGGTGACGTACTACGAGAGGCCTGGCATGTCCGACTTTGCCGAGATGA
GGAAGGTCGGCATCACCAAGGCGGACCTGTTGGACCACTACGTCTATTGC
ATGGAATACCTCTGGCAGATGGATGTCTGTGTTGCACCCGTGTATGTGCG
AGGACCTATATATGTATTCGCGAACAGTACATGTCGGCATGTATACTGGT
ACATGACAGAGTTGTGTGTGGGGGTCGCCCGCCCCCCTTTTCTGGTGCCG
TGCCGCCAAAGGTTCGCGCTGATCAAGAAGAAGTATGCGCACTGCTTCCA
CCTCCCGGACAAGGGAGGGCGGGTGACGTACTACGAGAGGCCTGGCATGT
CCGACTTTGCCGAGATGAGGAAGGTCGGCATCACCAAGGCGGACCTGTTG
GACCACTACGTCTATTGCATGGAATACCTCTGGCAGGTGCTTCAGCCCAG
GCAGAGCCAGCGTATCACGATCATCATCGACCTGGCGGGGGTGAAGTTCA
GAGACCTCGTCGGCGAGTCTTTGGCGTTTCTCAAGACCAGCGTCGGAATG
ATGTCGAGGCATTACCCGCAGCGGTCCTTCAAGGTGCTTCAGCCCAGGCA
GAGCCAGCGTATCACGATCATCATCGACCTGGCGGGGGTGAAGTTCAGAG
ACCTCGTCGGCGAGTCTTTGGCGTTTCTCAAGACCAGCGTCGGAATGATG
TCGAGGCATTACCCGCAGCGGTCCTTCAAGATTATGATCTTGAACGCGCC
TTCGTTCTTCAACTCGGTCTTCGCCCTGGTGAAACCCATGTTGAACGAAG
CGACCAAGAAAAAGATCGACCTGCTGCCCGTCGCCAACGTGGGGGAGGAG
ATGCTCAAGGTTATCCCCGCCGAACACCTACCTCTGCACTACGGGGGGAC
TGGGGAGATTATGATCTTGAACGCGCCTTCGTTCTTCAACTCGGTCTTCG
CCCTGGTGAAACCCATGTTGAACGAAGCGACCAAGAAAAAGATCGACCTG
CTGCCCGTCGCCAACGTGGGGGAGGAGATGCTCAAGGTTATCCCCGCCGA
ACACCTACCTCTGCACTACGGGGGGACTGGGGAGGCTGATTTGGGAGAAT
CTCCTGCGGAGCTGGCCTTGCTGGCGCACGTGCAAAAGGTGTTGGAGGAG
AACGGCCAAACGATGCAGACGTCCTAAGCTGATTTGGGAGAATCTCCTGC
GGAGCTGGCCTTGCTGGCGCACGTGCAAAAGGTGTTGGAGGAGAACGGCC
AAACGATGCAGACGTCCTAA
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