mRNA_S-firma_F_contig1083.1114.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1083.1114.1
Unique NamemRNA_S-firma_F_contig1083.1114.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1083.1114.1 vs. uniprot
Match: D7FMT8_ECTSI (Oxa1-like homolog, mitochondrial inner membrane insertase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT8_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 1.620e-123
Identity = 188/256 (73.44%), Postives = 209/256 (81.64%), Query Frame = 2 
Query:  524 HIIGGVQTGVEGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEIQILRDHLATTLDKIPQRRVLARWQKYKSFFSGTRGILGLHGTHVPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTGGILWFVDLTATDSSLMLPIIGTLLTYTSLELAKMKGATGWIKFFQDGMQTFVILMLPWTSTFPQASGTHRPWQGVFMYWIPSSVFQMGQTFAMKNNTVREFIGLQPLAAP-RGAAGTAP 1288
            H++GGVQ+GV+ VHH TGLPWWATI VATI VK+SLLPVVVYQA HMDRMR AWPEIQILR +LAT+L++IPQ RVL RW+KYK FFSG RG+LGLHGTH+ G+FATPLVNLPVF+ FVWSIRGMLRD TVPGLDTG          T  SLMLPIIGTL TYTSLE+ KMKGATGW+KFFQDGMQTF+ILMLPW STFPQ         GVFMYWIPS+VFQMGQT+ MKNN VRE +GL+PL  P R AAG  P
Sbjct:    2 HVMGGVQSGVQAVHHTTGLPWWATIAVATIGVKISLLPVVVYQAGHMDRMRAAWPEIQILRGYLATSLEEIPQERVLERWRKYKVFFSGARGVLGLHGTHLRGMFATPLVNLPVFITFVWSIRGMLRDGTVPGLDTGEA-------DTVHSLMLPIIGTLCTYTSLEIVKMKGATGWMKFFQDGMQTFIILMLPWVSTFPQ---------GVFMYWIPSAVFQMGQTYTMKNNKVRELLGLKPLGLPPREAAGATP 241
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BLAST of mRNA_S-firma_F_contig1083.1114.1 vs. uniprot
Match: A0A6H5JKU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU0_9PHAE)

HSP 1 Score: 353 bits (907), Expect = 6.740e-114
Identity = 191/302 (63.25%), Postives = 214/302 (70.86%), Query Frame = 2 
Query:  488 MHLLHGVLTTGKHIIGGVQTGVEGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEIQILRDHLATTLDK----------------------IPQRRVLARWQKYKSFFSGTRGILGLHGTHVPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTG------------GILWFVDLTATDSSLMLPIIGTLLTYTSLELAKMKGATGWIKFFQDGMQTFVILMLPWTSTFPQASGTHRPWQGVFMYWIPSSVFQMGQTFAMKNNTVREFIGLQPLAAP-RGAAGTAP 1288
            M+LL GVLT G H++GGVQ+GV+ VHH TGLPWWATI VATI VK+SLLPVVVYQA HMDRMR AWPEIQILR +LAT+L++                      IPQ+RVL RW+KYK FFSG RGILGLHGTH+ G+FATPLVNLPVF+ FVWSIRGMLRD T PGLDTG            GILWFVDLT  DSSLMLPIIGTL TYTSLE+ KMKGATGWIK  +       + + P    F     T R  QGVFMYWIPSS+FQMGQT+ MKNN VRE +GL+PL  P R  AG  P
Sbjct:    1 MYLLKGVLTAGVHVLGGVQSGVQAVHHTTGLPWWATIAVATIGVKISLLPVVVYQAGHMDRMRAAWPEIQILRSYLATSLEEGLVSRPIFLVQPPRLCHHRRCQIPQQRVLERWRKYKVFFSGARGILGLHGTHLRGMFATPLVNLPVFITFVWSIRGMLRDGTAPGLDTGEAVTVAPATKLGGILWFVDLTVPDSSLMLPIIGTLCTYTSLEIVKMKGATGWIKLER-------LAVTPSPRLF-----TRRHDQGVFMYWIPSSLFQMGQTYTMKNNKVRELLGLKPLGLPPREDAGATP 290
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BLAST of mRNA_S-firma_F_contig1083.1114.1 vs. uniprot
Match: A0A024TNQ9_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TNQ9_9STRA)

HSP 1 Score: 134 bits (336), Expect = 5.600e-31
Identity = 86/261 (32.95%), Postives = 132/261 (50.57%), Query Frame = 2 
Query:  527 IIGGVQTGVEGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEI-QILRDHLATTL---DKIPQRRVLARWQKYKSFFSGTRGILGLHGTHVPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTGGILWFVDLTATDSSLMLPIIGTLLTYTSLELAKMKGATGWIKFFQ---DGMQTFVILMLPWTSTFPQASGTHRPWQGVFMYWIPSSVFQMGQTFAMKNNTVREFIGLQPLAAPRGAAGTAP 1288
            ++   Q  +E VH  TGLPWWAT GV  I V+ +L P++VYQ +  +RM  A  E+ ++ + +L   +     IPQ++V A    ++  + G +     + TH     ATPL+ +P F+L  +S R ++R   V GLDTGG+  F +L   D +L+LP +    TY + EL      T  +K  Q   D  Q   +L  P+    PQ         G+F YW+ SS     QT A++  ++R  +GL+ + A   AA   P
Sbjct:   57 LVDAAQKLIEAVHVTTGLPWWATFGVTAIAVRGTLFPLMVYQIKATERMANASKEMREVWKSYLYARMFLPPAIPQKQVEA----FQLMYKGVKLTWEKYQTHPVKCVATPLLQIPTFLLMAYSTRELVRSGRVEGLDTGGVWMFQNLVEADGTLILPALAVGCTYLNFELM----GTSKVKLIQALKDKFQYIPLLSFPFICQMPQ---------GIFFYWLASSWCSFAQTMALRQPSIRRALGLRDITASSLAAAPVP 300
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BLAST of mRNA_S-firma_F_contig1083.1114.1 vs. uniprot
Match: W4G8S7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G8S7_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.330e-29
Identity = 84/251 (33.47%), Postives = 121/251 (48.21%), Query Frame = 2 
Query:  527 IIGGVQTGVEGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRM-------RMAWPEIQILRDHLATTLDKIPQRRVLARWQKYKSFFSGTRGILGLHGTHVPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTGGILWFVDLTATDSSLMLPIIGTLLTYTSLELAKMKGATGWIKFFQ---DGMQTFVILMLPWTSTFPQASGTHRPWQGVFMYWIPSSVFQMGQTFAMKNNTVREFIGLQ 1249
            ++   Q  +E VH  TGLPWWAT G   I V+ +L P++VYQ +  +RM       R  W      R  L      IPQ++V A    ++  + G +     H TH     ATPLV +P F+L  +S R ++R   V GLDTGG+  F +L   DS+ +LP +    TY + EL      T  IK  Q   +  Q   +L  P+    PQ         G+F YW+ SS     QT A++  ++R  +GL+
Sbjct:   60 LVDAAQRLIEAVHVTTGLPWWATFGATAIAVRGTLFPLMVYQIKATERMAEAAKDTREVWKAYLYARMFLPPA---IPQKQVEA----FQLMYKGVKLTWEKHNTHPIQCVATPLVQIPTFLLMAYSTRELVRSGKVDGLDTGGVWLFQNLVEADSTFILPALAVGCTYLNFELM----GTSKIKLLQSLKNKFQYIPLLSFPFICQIPQ---------GIFFYWLASSWCSFAQTMALRQPSIRRALGLK 290
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BLAST of mRNA_S-firma_F_contig1083.1114.1 vs. uniprot
Match: A0A1X2HWI0_SYNRA (60Kd inner membrane protein-domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HWI0_SYNRA)

HSP 1 Score: 128 bits (322), Expect = 4.530e-29
Identity = 82/246 (33.33%), Postives = 124/246 (50.41%), Query Frame = 2 
Query:  530 IGGVQTGVEGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEIQILRDHLAT---TLDKIPQRRVLARWQKYKSFFSGTRGILGLHGTHVPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTGGILWFVDLTATDSSLMLPIIGTLLTYTSLELAKMKGATG-WIKFFQDGMQTFVILMLPWTSTFPQASGTHRPWQGVFMYWIPSSVFQMGQTFAMKNNTVREFIGLQPL 1255
            +G ++ G+E VH  TGLPWW +I VATI V+  LLP++V   R+  ++    PE+  +  +L     T D +   +  A  QK          +   +G H       PL+ +PV + F  ++R M  D  VPGL TGG+ WF DLTA D   +LP++        LE     GA     K  ++  +   I M+P+T+  P          GVF+YW+ S+ F +GQ  A+KN T+R+ + + PL
Sbjct:   47 VGALEAGLEAVHVYTGLPWWGSIAVATIAVRTLLLPLMVKIQRNNAKLMNINPEVTRIMGNLKAAQQTGDAVAVGKYSAEIQK----------LFTENGCHPMKSLGLPLIQMPVMISFFMALRAM-ADLPVPGLLTGGLGWFTDLTAKDPYYVLPVVSAAGVMAILEAGSEVGAANPQSKTMKNLFRGLTIAMVPFTAWMPS---------GVFVYWLTSNTFSIGQILALKNPTIRKALNIPPL 272
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BLAST of mRNA_S-firma_F_contig1083.1114.1 vs. uniprot
Match: A0A485L9H5_9STRA (Aste57867_18210 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9H5_9STRA)

HSP 1 Score: 128 bits (322), Expect = 6.810e-29
Identity = 89/262 (33.97%), Postives = 125/262 (47.71%), Query Frame = 2 
Query:  527 IIGGVQTGVEGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRM-------RMAWPEIQILRDHLATTLDKIPQRRVLARWQKYKSFFSGTRGILGLHGTHVPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTGGILWFVDLTATDSSLMLPIIGTLLTYTSLELAKMKGATGWIKFFQDGMQTFVILMLPWTSTFPQASGTHRPWQGVFMYWIPSSVFQMGQTFAMKNNTVREFIGLQ--PLAAPRGAAGTA 1285
            I+   Q  +E VH  TGLPWWAT G+  I V+ SL P++VYQ +  +RM       R  W      R  L      IPQ+++ A       F  G +     H TH     ATPL+ +P F+L  +S R ++R   + GLDTGG   F +L   DS+ +LP +    TY + EL   K     + F ++ +Q   +L  P+    PQ         G+F YWI SS     Q  A++   +R  +GL+  P AA   AA TA
Sbjct:   60 IVDVAQNVIEAVHTTTGLPWWATFGLTAIAVRGSLFPLLVYQIKATERMGNAGSEMRSMWKSFMYARMFLPPA---IPQKQLEA----LVLFHKGLKLSWEKHSTHPIQCVATPLIQVPSFILMAYSTREIIRSGKMDGLDTGGFWMFQNLMEADSTFILPALAVGCTYLNFELMG-KSQIKIMPFLKNSLQYIPLLSFPFICQLPQ---------GIFFYWIASSWCSFAQAAALRQPAIRSAVGLKELPSAASAVAAVTA 304
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BLAST of mRNA_S-firma_F_contig1083.1114.1 vs. uniprot
Match: A0A8H7EUD2_9FUNG (Mitochondrial inner membrane protein oxa1l n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EUD2_9FUNG)

HSP 1 Score: 132 bits (331), Expect = 1.440e-28
Identity = 81/246 (32.93%), Postives = 129/246 (52.44%), Query Frame = 2 
Query:  530 IGGVQTGVEGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEIQILRDHLATTLDKIPQRRVLARWQKYKSFFSGTRGILGLHGTHVPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTGGILWFVDLTATDSSLMLPIIGTLLTYTSLELAKMKG-ATGWIKFFQDGMQTFVILMLPWTSTFPQASGTHRPWQGVFMYWIPSSVFQMGQTFAMKNNTVREFIGLQPLAAP 1264
            +GG++  +E +H  +GLPWW TI +AT+ V+++LLPV+V   R+  ++    PE+  + D+L T   +     +     + ++ F       G H     GL   PLV +PV V F  ++RGM  +  VPGL  GG+ WF DLTA D   +LP++        LE     G A    K  ++  +   ++M+P+T+  P +         VF+YW  S+VF +GQ  A+KN T+R+ + + PL  P
Sbjct:  335 VGGLEAMLEAIHVYSGLPWWGTIALATVTVRLALLPVMVKIQRNNAKLMNINPEVTRIMDNLKTAQAQGDTHSISKYSAEIQTLFKSN----GCHPLKSLGL---PLVQMPVMVSFFLALRGM-AELPVPGLQNGGMWWFQDLTAQDPYYILPVVSAAGMMAVLEAGTEAGMANPQSKSMKNFFRAITVIMVPFTAWMPSS---------VFVYWATSNVFSIGQILALKNPTIRKALNIPPLVRP 563
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BLAST of mRNA_S-firma_F_contig1083.1114.1 vs. uniprot
Match: A0A7S3H9D9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9D9_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.630e-27
Identity = 77/243 (31.69%), Postives = 120/243 (49.38%), Query Frame = 2 
Query:  539 VQTGVEGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEIQILRDHLATTLDKIPQRRVLARWQKYKSFFSGTRGILGLHGTHVPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTGGILWFVDLTATDSSLMLPIIGTLLTYTSLELA-KMKGATGWIKFFQDGMQTFVILMLPWTSTFPQASGTHRPWQGVFMYWIPSSVFQMGQTFAMKNNTVREFIGLQPLAAP 1264
            +Q+ +  +H  T +PWWATIG++T+ V+ +LLP+V  Q     ++ +A PE+  L       L+ +       R +    F  G    L ++      L   PL+N+ VF+ FV+S+R +L       L  GG LWFVDL + D++  LP     LTY  LELA +           +D  Q+ +IL LP+ +  P          GVF YWIPSS+F + Q+  +K    ++   +  +A P
Sbjct:   61 IQSSMLALHTATDIPWWATIGLSTVFVRTALLPLVRSQIIASKKLALAMPEMNYLYKLQLRRLNGVKVTSTYERLRIISVFVKGVNACLKVYDVPKRKLIGYPLMNIGVFMTFVYSVRDLLLKTQDYSLLDGGTLWFVDLASKDATFGLPFAALGLTYLGLELAFRQNSQDNLFSRLKDYGQSGIILFLPFVTQLPA---------GVFCYWIPSSIFAITQSQILKGPYAQKLFNIPDIAPP 294
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BLAST of mRNA_S-firma_F_contig1083.1114.1 vs. uniprot
Match: A0A482RS99_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RS99_9ARCH)

HSP 1 Score: 122 bits (305), Expect = 2.530e-27
Identity = 76/239 (31.80%), Postives = 123/239 (51.46%), Query Frame = 2 
Query:  527 IIGGVQTGVEGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEIQIL---------------RDHLATTLDKIPQRRVLARWQKYKSFFSGTRGILGLHGTHVPGLFATPLVNLPVFVLFVWSIRGMLRDATVP-GLDTGGILWFVDLTATDSSLMLPIIGTLLTYTSLELA---KMKGATGWIKFFQDGMQTFVILMLPWTSTFPQASGTHRPWQGVFMYWIPSSV 1186
            +IG VQ  +   H  TGLPWW+TI ++T+ +++ LLP+V  Q+    ++  A PE+ +L               + HL+   D I      + +Q   S   G +  L LH   +  L   PL++L +F LFV+S+R ++    +  GL+ GG+ WF DL+  D SL+LP+    L+Y +++ A        +G ++  +DG Q+ ++L LP  ST P          GVF YWIP+ +
Sbjct:   36 LIGLVQGALVAAHDFTGLPWWSTIALSTVTLRIGLLPLVHQQSLVSRKLAKAMPELSLLVQLYRQKVGEARSMKKAHLSPGPDNIQ-----SLFQLTSSLRKGIKATLALHDIRMLELLGYPLIHLYLFCLFVFSVRDLVLHGPLDLGLEQGGLGWFRDLSERDGSLLLPLTALSLSYANIDTALNYNSSNKSGALQLLRDGAQSLLLLSLPMVSTLPC---------GVFCYWIPNGI 260
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BLAST of mRNA_S-firma_F_contig1083.1114.1 vs. uniprot
Match: A0A8H7S8I9_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S8I9_9FUNG)

HSP 1 Score: 122 bits (306), Expect = 1.510e-26
Identity = 75/246 (30.49%), Postives = 121/246 (49.19%), Query Frame = 2 
Query:  530 IGGVQTGVEGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEIQILRDHLATTLDKIPQRRVLARWQKYKSFFSGTRGILGLHGTHVPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTGGILWFVDLTATDSSLMLPIIGTLLTYTSLELAKMKGATG-WIKFFQDGMQTFVILMLPWTSTFPQASGTHRPWQGVFMYWIPSSVFQMGQTFAMKNNTVREFIGLQPLAAP 1264
            +GG++  +E +H  +GLPWW +I  AT+ V+++LLP+++   R+  +M    PE+  L ++L T   +     V     + +S F         HG H       P++ +PV + F  ++R M  D  VPGL TGG+ WF DLTA D   +LP+         LE     GA     K  ++  +   ++M+P+T+  P          GVF+YWI S+   + Q  A+KN  +R+   +  L  P
Sbjct:   95 VGGLEAMLEAIHVYSGLPWWGSIAAATVVVRLALLPLMIKIQRNNAKMMNLNPEVSRLMENLKTAQQQGDSVAVGKYSNEMQSLFKK-------HGCHPMKSLGLPIIQMPVMISFFMALRAM-ADLPVPGLQTGGLGWFTDLTAQDPYYVLPVASAAGVMAILEAGSEVGAANPQSKTMKNFFRGMAVVMIPFTAWMPS---------GVFVYWITSNAVSITQILALKNPAIRKAFDIPKLVKP 323
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1083.1114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMT8_ECTSI1.620e-12373.44Oxa1-like homolog, mitochondrial inner membrane in... [more]
A0A6H5JKU0_9PHAE6.740e-11463.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024TNQ9_9STRA5.600e-3132.95Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
W4G8S7_9STRA3.330e-2933.47Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A1X2HWI0_SYNRA4.530e-2933.3360Kd inner membrane protein-domain-containing prot... [more]
A0A485L9H5_9STRA6.810e-2933.97Aste57867_18210 protein n=1 Tax=Aphanomyces stella... [more]
A0A8H7EUD2_9FUNG1.440e-2832.93Mitochondrial inner membrane protein oxa1l n=1 Tax... [more]
A0A7S3H9D9_9STRA1.630e-2731.69Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482RS99_9ARCH2.530e-2731.80Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A8H7S8I9_9FUNG1.510e-2630.49Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1083contigS-firma_F_contig1083:595..6152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FMT8
PFAMs60KD_IMP
Max annot lvl2759|Eukaryota
KEGG koko:K03217
KEGG TC2.A.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Evalue8.02e-128
EggNOG OGsCOG0706@1|root,KOG1239@2759|Eukaryota
Descriptionmembrane insertase activity
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044,ko03029
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionOxa1-like homolog, mitochondrial inner membrane insertase
Ec32 orthologEc-21_000200.1
Exons6
Model size2034
Cds size1272
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1083.1114.1prot_S-firma_F_contig1083.1114.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1083 713..5508 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.3032398-UTR-S-firma_F_contig1083:594..7121622815626.3032398-UTR-S-firma_F_contig1083:594..712Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1083 595..712 +
1696949462.9073255-UTR-S-firma_F_contig1083:594..7121696949462.9073255-UTR-S-firma_F_contig1083:594..712Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1083 595..712 +
1622815626.3728163-UTR-S-firma_F_contig1083:5508..61521622815626.3728163-UTR-S-firma_F_contig1083:5508..6152Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1083 5509..6152 +
1696949462.99218-UTR-S-firma_F_contig1083:5508..61521696949462.99218-UTR-S-firma_F_contig1083:5508..6152Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1083 5509..6152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.314017-CDS-S-firma_F_contig1083:712..13271622815626.314017-CDS-S-firma_F_contig1083:712..1327Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 713..1327 +
1696949462.9239428-CDS-S-firma_F_contig1083:712..13271696949462.9239428-CDS-S-firma_F_contig1083:712..1327Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 713..1327 +
1622815626.3242762-CDS-S-firma_F_contig1083:2514..25971622815626.3242762-CDS-S-firma_F_contig1083:2514..2597Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 2515..2597 +
1696949462.9353387-CDS-S-firma_F_contig1083:2514..25971696949462.9353387-CDS-S-firma_F_contig1083:2514..2597Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 2515..2597 +
1622815626.3336658-CDS-S-firma_F_contig1083:3076..31921622815626.3336658-CDS-S-firma_F_contig1083:3076..3192Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 3077..3192 +
1696949462.9436977-CDS-S-firma_F_contig1083:3076..31921696949462.9436977-CDS-S-firma_F_contig1083:3076..3192Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 3077..3192 +
1622815626.3430521-CDS-S-firma_F_contig1083:3928..40561622815626.3430521-CDS-S-firma_F_contig1083:3928..4056Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 3929..4056 +
1696949462.9526126-CDS-S-firma_F_contig1083:3928..40561696949462.9526126-CDS-S-firma_F_contig1083:3928..4056Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 3929..4056 +
1622815626.3537154-CDS-S-firma_F_contig1083:4620..47131622815626.3537154-CDS-S-firma_F_contig1083:4620..4713Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 4621..4713 +
1696949462.9618618-CDS-S-firma_F_contig1083:4620..47131696949462.9618618-CDS-S-firma_F_contig1083:4620..4713Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 4621..4713 +
1622815626.3631444-CDS-S-firma_F_contig1083:5271..55081622815626.3631444-CDS-S-firma_F_contig1083:5271..5508Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 5272..5508 +
1696949462.9785612-CDS-S-firma_F_contig1083:5271..55081696949462.9785612-CDS-S-firma_F_contig1083:5271..5508Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1083 5272..5508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1083.1114.1

>prot_S-firma_F_contig1083.1114.1 ID=prot_S-firma_F_contig1083.1114.1|Name=mRNA_S-firma_F_contig1083.1114.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=424bp
MIACMRARALSRGLSHAGRRRPPFVHPDPLPSSWVVRFASAADNSSSNSS
SSNSPSSGGSGGTSVGGSAADGSATPPPESGTSGFDPSSLVPPPPSAEPW
STSAPEFVADLPGTVSSLMGDAGMHLLHGVLTTGKHIIGGVQTGVEGVHH
LTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEIQILRDHLA
TTLDKIPQRRVLARWQKYKSFFSGTRGILGLHGTHVPGLFATPLVNLPVF
VLFVWSIRGMLRDATVPGLDTGGILWFVDLTATDSSLMLPIIGTLLTYTS
LELAKMKGATGWIKFFQDGMQTFVILMLPWTSTFPQASGTHRPWQGVFMY
WIPSSVFQMGQTFAMKNNTVREFIGLQPLAAPRGAAGTAPPVEVAKAMDG
SSPPEEQGQKSLTAGVMPGKNTS*
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mRNA from alignment at S-firma_F_contig1083:595..6152+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1083.1114.1 ID=mRNA_S-firma_F_contig1083.1114.1|Name=mRNA_S-firma_F_contig1083.1114.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5558bp|location=Sequence derived from alignment at S-firma_F_contig1083:595..6152+ (Sphaerotrichia firma ET2_F female)
GGCTCGCACAGGCAACCAATGGGTACCCACATGCTCGCCGAAGCCGTACA
TAAGTGCCTGCTTCCCCAGGCTCCGCACAACGCGACAGCACGCAGTTGTC
CGGCGTTTTCAGTGAGCGATGATTGCATGCATGCGCGCAAGAGCTCTGTC
AAGAGGTCTGTCTCATGCTGGTCGGCGACGACCTCCTTTCGTGCACCCCG
ACCCCCTCCCAAGCTCGTGGGTCGTCAGGTTCGCTTCCGCAGCCGACAAC
AGCAGCAGTAACAGCAGCAGCAGCAACAGCCCCAGCAGTGGCGGTAGTGG
CGGTACTAGCGTTGGTGGTTCAGCAGCTGATGGCTCAGCCACCCCTCCCC
CAGAGTCGGGAACCTCCGGCTTCGACCCGTCTTCTTTGGTACCACCGCCG
CCAAGCGCGGAACCTTGGAGCACTTCAGCTCCCGAGTTTGTGGCAGACTT
GCCCGGGACCGTCAGCTCGTTGATGGGGGACGCGGGGATGCACCTCCTGC
ACGGGGTGCTCACGACCGGGAAGCACATCATAGGGGGCGTGCAGACCGGG
GTGGAGGGGGTCCACCACTTGACGGGGCTGCCATGGTGGGCGACGATTGG
GGTGGCGACGATCTGCGTCAAGGTTTCCCTCCTGCCCGTCGTCGTCTACC
AGGCCAGGCACATGGACCGCATGCGGATGGCGTGGCCGGAGATTCAGATT
CTGCGGGACCACCTCGCCACGACGCTAGACAAGGTGGGGTTGGTTTGGTT
TGCCTGGCGTTGTGCTCTGAGACGCAGAGGAACGAGTGGTTGCTTCGCAC
GTAAGCGCTATCCATTGGTCTCGAGGGCTTGAGGCGGGGTATATATATTG
CACACATGTCAGCGCCCCGCATCCCACGGATGGATGGTGGATGGGCGCGT
TTTCCCGTGTTGCTGGTGCTCGCCGCATTCGTCGTCGGCGCTGCTGAACA
CACATACGTGCGGGGTTGCTTGTTGACACCAGGCCATGCTCTAGATCCAT
CGCTGTCGTTTGGTCGTGAGGTGCACCGGATGTTTACACGCCACTAAACT
TAAAATTACAACATATGATACCTTGGTACAAAGGATCTACTCGTAGCAAT
CGTGGTCGTGGGGCCCACCAACCGTTACTTGTTACTTGCGCTGCACGCCA
GCAGCAGTCGGACAACCACACGGCAGCTTCCCGCCTCTATGGCCGCCTTG
CCTCAGGCGGGGGTGAGCACTGTTCTGGCTGTTCTTGGCTCTTGCAACGC
GACGCAGCCCATGATCCCATGCAACGGGCACGACACAAACTACGAAACTA
AACAACCAACAAACCTAACGGATTGCGGATTTTGTGCTGTTGGCTGGGAC
GGGGAGGGTTNNNNNNNNNNCAACAGTCTCCCTGGAACGACTTATTCACA
GGACGGACGTATACGGCTGACGAATGTAGAAACTTTATGTAAAACCCGAT
GCGATGGAGCCCACCCCCGCCACCCCCGCCCGTTCTTTGCTCTTTGCCCA
TACTTATCGGTGGTGACTTTTAGCTTCAGCAGTAGACTGTTTTCATGCTG
AGTTTAGGTGAATGTAGCCTGCAAGCGGTAGAGGTCCGAGCAGTGGCGGC
CACCTTGTCCTTGGCATGCCTCATGCTTCATGCGCTTCCAGCGTGTCAAA
TTACGGCGTGCGTAATGTATATACGAAATTTGACGCCTTTTAGTTCGTTG
GTGCGTAGTCCATCTCATCGCTCTGATGTTATTCGATGACCTTGGTATGG
AAAACTACGATTTGTCATTTTCACGTAAATGCGCTTGTGTGCTTGTGCAC
ATGCTATTGCAGCTTTGTACCTTGGTCGAGTCGTCGAACCTAACATCGAC
GTACGACACGTTCGCGCGTGTTCCATGCCGGGCAATCGGCGACGTCTCAC
TCCATCCATCCATCGATCAGATTCCGCAACGACGTGTGCTGGCGCGATGG
CAGAAGTACAAAAGTTTCTTTTCGGGGACTCGAGGGATACTGGGGCTGCA
CGGGTGAGAGTTATATACTATCATATTGACTTCCTTCCAAGGACTTCGCG
TGACTAAAACTCCTGCATAATTGAATATATTTCGTACGACTGCAACGGAG
GGGGGCAGGGAAATCGGGCAGGGCAGGGCAGGACATTTAAGAAGTAGACG
CTGGCGAAAGGAATACTGCCAGGTGGCAATGCTATGTACTGTTTGGTGTC
CCTCCTGCAAGCCTCTTGATGCCGATAGCAACAAGAGCAAGAACGGACTT
TTAAACATGTTTCTTGCGCGGACTTATCCTTTGAAGTACAAGCACCGTCC
GTACGGCAGCAGTCCGCGGGTGCAGTTAGCGGCATGCATGTCAAGTGTTG
TTGCTGCTGAGCTAGCTGCTGAGCTAGCTGCTGAGCTAGCTAGCTAGCGT
CTTGACCGCTGTGAGACTGGTGTTTTAACTCTACCCCCCCCCCCAATTGC
TTTGCTGTACGTAACATACGTGCGCATGACAGGACTCACGTGCCGGGGCT
ATTTGCGACGCCGCTGGTCAACCTGCCGGTGTTCGTGCTGTTTGTATGGT
CCATTCGCGGGATGCTCAGAGACGCGACAGTGCCTGGGTTAGATACGGGT
GAGAGGGGGATGTTGGATATTGGGGTATTTTGTAGTGCGAGACCGACGAC
CTGTGTGTGCTTTGGTACAGCAGTATTGGTATTGTGAAGGCGTGTCTCCG
GGCCTGTAACCGTCAGGTGAAGACAGCTCGGGCGTCGGTGTGCGGATAGT
CCAATCACTCTTTCTATTCTAACAAGCCTCACCCACATACGCCGACCCCA
GCGTACAACAGCGGATGTACAGCGGACGGATGTACAGCGGACAGGAGATA
CTCTAGACTATCGCAAGCCCTACCTCTTCGAGATCGTCGGACCTTTGCGG
TTCTGCAGCATTGAACCATCGAAATGTAGCATACTTCCGAGCATTGTTTG
GAAACGGTGTCGACACCCCAGACCAGGGCGAGTATCGCGAGCTCTTCTTG
GTACTTGGCTCGTGGCAGGCGTTAGGTGGTACTAGGCCCTAGATATGATC
GGATGAATCTTCGGAGGTTTCGTGTGTCATGGATGGGTACGTTGTGGGCA
CACGGTGCCGCCGGTGCCCCCGTTGGAGAGAGTCAGCTCTTCACTCGTTG
ATAATCGAGGTCTTGAGTCAACCTTTGACCACCGTCCTTTGATTCTGCAA
ACGGCACCCAAGCAGAAAGTCCCGTGCATTTGGCGACACCTCCGTTCCAG
CTCAACAAGCGCCCTTCCCTTCTCACTCCTGTCTCTCTCCGTTCTGTCTC
CTGTCTCTGCCTTTCCTGCCTTGTCGGGCCTCAGGTGGAATCCTCTGGTT
TGTGGACTTGACAGCGACGGACTCGAGCCTCATGCTGCCCATCATAGGGA
CGCTGCTCACCTACACCAGCTTGGAACTGGCGAAGATGAAGGGCGCTACG
GGGTGGATAAAGGTGCGTACTCACCTTGTCTTGTCGCAGTCGAGTGGGGA
ATCAGTAGGTTGGCTTTCTGTCGCTTGTTGGGGGCAATACTACTTTACAT
CAATACCAAGCACAGCTGCGGCACTGGCCACAAAGTTGGAATCAGCACTT
GTGGAGTCTAGAATGCCGAGCATCGAGAGGACAAGGCGGAGTGTGGTCAC
TGCAGAACGACCGCGTGGCCCGTGCGACCACCTGTGGAGCGGGGTCGTGT
CCTTCCATGGTGTGGCGCCTTTGCTCTGTACAACAGTTGCTGTGGACGTG
TGGGTCTCGGAGACGGCAATCGCGCTACCAACTACGGTATACACGATACT
CAATGCACGATACACGGGACACGCTGCTTGCACTGCGTCACGCCGCACTC
GTCGCTTGTCGCTTGGCTTCGACCCGCGTCACCCCCTGTCGCTCTCGCTG
TCTCATGCTTGCTGCGGCGATTTTGTTGTTGTGCCATGTATCACATGCTA
TGCTATGCTATGCTATGTTATCTTATTCCATGCTATGCTATGCTGTGCTA
AATTATGCTGTGCTCTGCTACAACAGTTCTTCCAAGACGGAATGCAGACG
TTCGTCATCCTGATGCTCCCCTGGACCAGCACCTTCCCCCAGGCAAGTGG
TACACACCGTCCGTGGCAAGTGCCGTGACATCACGGAACAAACTTATACG
ACCGCATTTGTTGGTCTTTCATTGTCTTGCTTCGCTCAAGAACGCCCCGA
CAGTTCTTATTGTAGGTGTGATATAGTATGTGCATGCCAATACGTGCTTG
CTTCGGTTATCGTTTCGCCTCGTCTCGAAAAACGTAGACTAAAAAGATAA
TGTGAGAACGTGTTCTGGGGAGACATGCTTTGACGGCTGCCCCCGCACAA
AGACAAGCGTGGAACAACGGCATACCGTGTTGCATAACGGAACATACCGT
GTTGCATCACTGCGCACATCAGCTGCGCCCCAAGAGGTTGTTCGTGAGAA
GTGCCGAAGGTTGAAGGATGTACGTCCATGCCCTCACCGGCAAGCTGTTT
TTCCTGTGCCATCCAGCAACACGAATTCGCTCGACCAAAAACAAAAGCTA
CATGCATAAATACATACGAAGTACATACATACATACGTCTTTTCGAGGAG
ACCTTTTCCCACATTTTCCAATGCTGGGGTCCGTATCTTCCACGTGCCCC
CTATTCCCTTGTTTTCGCGTTGGCCAGGGCGTCTTCATGTACTGGATACC
TTCCTCCGTGTTCCAGATGGGCCAGACTTTCGCCATGAAGAACAACACGG
TTCGCGAGTTTATCGGCTTGCAACCCCTGGCGGCGCCACGTGGAGCTGCA
GGCACCGCGCCACCCGTCGAGGTAGCGAAGGCCATGGACGGATCCTCGCC
CCCAGAAGAACAGGGACAAAAGTCGTTGACGGCTGGGGTGATGCCGGGAA
AGAACACGTCCTAAGCGAGATCATGATAAATTATCACAACGATATTTGCA
CCCGGCTTAGTTTTAGATGCTTGATTCTGGTGCCATTCATGTGCCCCGGA
GATGTTGTTTTTCTGCTCAATCGTTTGCCATTTATTTCTCGTATGAGGGC
TCTCCCGCTGGTGTTCGTGTGATGATATCTTTCCACGAGGTATGCCTAGA
CTACCGCAAGTGGTTGGGGCTCAAGTTCTGTCACAATATCCAGCGCCTCC
GTTTCCTATCACTTCTGATCAGATACCAGATTATACGGTTTTCTGCGTCG
CTCTTTCCTGTTTCAGCACGTGCGTGTCAATAGTATCGGTCATGCTTGTA
TCCGGAGTATTAAATACTTGTTGCACGTCGATAGTCTCGTCTTTGTGTCG
GGGGATGTTTTTGTGTGGGGGATTGCTCATTCATTTGTTTGCGTGTTCGG
CCGTAACGTCAGCAGCAGAGGTGGCCGAAGCAGTCTGTGTACCAATAAGG
GTGATCGCGGCAAACATTTAAAACCATTGAACTTTTTTGTCGATGGTCGA
GTATTTGGTCGGTTGCAGAAGTCTGTGTAAACAGCACTAGTAAATAGTTC
TGGTCCGAGTGTTCTCGCGGACGGTGGAAAAATGATGAAACGCGCAGGCG
GCGAAGGC
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Coding sequence (CDS) from alignment at S-firma_F_contig1083:595..6152+

>mRNA_S-firma_F_contig1083.1114.1 ID=mRNA_S-firma_F_contig1083.1114.1|Name=mRNA_S-firma_F_contig1083.1114.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2544bp|location=Sequence derived from alignment at S-firma_F_contig1083:595..6152+ (Sphaerotrichia firma ET2_F female)
ATGATTGCATGCATGCGCGCAAGAGCTCTGTCAAGAGGTCTGTCTCATGC
TGGTCGGCGACGACCTCCTTTCGTGCACCCCGACCCCCTCCCAAGCTCGT
GGGTCGTCAGGTTCGCTTCCGCAGCCGACAACAGCAGCAGTAACAGCAGC
AGCAGCAACAGCCCCAGCAGTGGCGGTAGTGGCGGTACTAGCGTTGGTGG
TTCAGCAGCTGATGGCTCAGCCACCCCTCCCCCAGAGTCGGGAACCTCCG
GCTTCGACCCGTCTTCTTTGGTACCACCGCCGCCAAGCGCGGAACCTTGG
AGCACTTCAGCTCCCGAGTTTGTGGCAGACTTGCCCGGGACCGTCAGCTC
GTTGATGGGGGACGCGGGGATGCACCTCCTGCACGGGGTGCTCACGACCG
GGAAGCACATCATAGGGGGCGTGCAGACCGGGGTGGAGGGGGTCCACCAC
TTGACGGGGCTGCCATGGTGGGCGACGATTGGGGTGGCGACGATCTGCGT
CAAGGTTTCCCTCCTGCCCGTCGTCGTCTACCAGGCCAGGCACATGGACC
GCATGCGGATGGCGTGGCCGGAGATTCAGATTCTGCGGGACCACCTCGCC
ACGACGCTAGACAAGATGATTGCATGCATGCGCGCAAGAGCTCTGTCAAG
AGGTCTGTCTCATGCTGGTCGGCGACGACCTCCTTTCGTGCACCCCGACC
CCCTCCCAAGCTCGTGGGTCGTCAGGTTCGCTTCCGCAGCCGACAACAGC
AGCAGTAACAGCAGCAGCAGCAACAGCCCCAGCAGTGGCGGTAGTGGCGG
TACTAGCGTTGGTGGTTCAGCAGCTGATGGCTCAGCCACCCCTCCCCCAG
AGTCGGGAACCTCCGGCTTCGACCCGTCTTCTTTGGTACCACCGCCGCCA
AGCGCGGAACCTTGGAGCACTTCAGCTCCCGAGTTTGTGGCAGACTTGCC
CGGGACCGTCAGCTCGTTGATGGGGGACGCGGGGATGCACCTCCTGCACG
GGGTGCTCACGACCGGGAAGCACATCATAGGGGGCGTGCAGACCGGGGTG
GAGGGGGTCCACCACTTGACGGGGCTGCCATGGTGGGCGACGATTGGGGT
GGCGACGATCTGCGTCAAGGTTTCCCTCCTGCCCGTCGTCGTCTACCAGG
CCAGGCACATGGACCGCATGCGGATGGCGTGGCCGGAGATTCAGATTCTG
CGGGACCACCTCGCCACGACGCTAGACAAGATTCCGCAACGACGTGTGCT
GGCGCGATGGCAGAAGTACAAAAGTTTCTTTTCGGGGACTCGAGGGATAC
TGGGGCTGCACGGATTCCGCAACGACGTGTGCTGGCGCGATGGCAGAAGT
ACAAAAGTTTCTTTTCGGGGACTCGAGGGATACTGGGGCTGCACGGGACT
CACGTGCCGGGGCTATTTGCGACGCCGCTGGTCAACCTGCCGGTGTTCGT
GCTGTTTGTATGGTCCATTCGCGGGATGCTCAGAGACGCGACAGTGCCTG
GGTTAGATACGGGACTCACGTGCCGGGGCTATTTGCGACGCCGCTGGTCA
ACCTGCCGGTGTTCGTGCTGTTTGTATGGTCCATTCGCGGGATGCTCAGA
GACGCGACAGTGCCTGGGTTAGATACGGGTGGAATCCTCTGGTTTGTGGA
CTTGACAGCGACGGACTCGAGCCTCATGCTGCCCATCATAGGGACGCTGC
TCACCTACACCAGCTTGGAACTGGCGAAGATGAAGGGCGCTACGGGGTGG
ATAAAGGTGGAATCCTCTGGTTTGTGGACTTGACAGCGACGGACTCGAGC
CTCATGCTGCCCATCATAGGGACGCTGCTCACCTACACCAGCTTGGAACT
GGCGAAGATGAAGGGCGCTACGGGGTGGATAAAGTTCTTCCAAGACGGAA
TGCAGACGTTCGTCATCCTGATGCTCCCCTGGACCAGCACCTTCCCCCAG
GCAAGTGGTACACACCGTCCGTGGCAATTCTTCCAAGACGGAATGCAGAC
GTTCGTCATCCTGATGCTCCCCTGGACCAGCACCTTCCCCCAGGCAAGTG
GTACACACCGTCCGTGGCAAGGCGTCTTCATGTACTGGATACCTTCCTCC
GTGTTCCAGATGGGCCAGACTTTCGCCATGAAGAACAACACGGTTCGCGA
GTTTATCGGCTTGCAACCCCTGGCGGCGCCACGTGGAGCTGCAGGCACCG
CGCCACCCGTCGAGGTAGCGAAGGCCATGGACGGATCCTCGCCCCCAGAA
GAACAGGGACAAAAGTCGTTGACGGCTGGGGTGATGCCGGGAAAGAACAC
GTCCTAAGGCGTCTTCATGTACTGGATACCTTCCTCCGTGTTCCAGATGG
GCCAGACTTTCGCCATGAAGAACAACACGGTTCGCGAGTTTATCGGCTTG
CAACCCCTGGCGGCGCCACGTGGAGCTGCAGGCACCGCGCCACCCGTCGA
GGTAGCGAAGGCCATGGACGGATCCTCGCCCCCAGAAGAACAGGGACAAA
AGTCGTTGACGGCTGGGGTGATGCCGGGAAAGAACACGTCCTAA
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