mRNA_S-firma_F_contig10829.1113.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10829.1113.1
Unique NamemRNA_S-firma_F_contig10829.1113.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10829.1113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10829contigS-firma_F_contig10829:4101..4885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size785
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10829.1113.1prot_S-firma_F_contig10829.1113.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10829 4120..4593 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.2452269-UTR-S-firma_F_contig10829:4100..41191622815626.2452269-UTR-S-firma_F_contig10829:4100..4119Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10829 4101..4119 +
1696949462.866241-UTR-S-firma_F_contig10829:4100..41191696949462.866241-UTR-S-firma_F_contig10829:4100..4119Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10829 4101..4119 +
1622815626.26921-UTR-S-firma_F_contig10829:4593..48851622815626.26921-UTR-S-firma_F_contig10829:4593..4885Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10829 4594..4885 +
1696949462.8939219-UTR-S-firma_F_contig10829:4593..48851696949462.8939219-UTR-S-firma_F_contig10829:4593..4885Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10829 4594..4885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.2583513-CDS-S-firma_F_contig10829:4119..45931622815626.2583513-CDS-S-firma_F_contig10829:4119..4593Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10829 4120..4593 +
1696949462.8778431-CDS-S-firma_F_contig10829:4119..45931696949462.8778431-CDS-S-firma_F_contig10829:4119..4593Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10829 4120..4593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10829.1113.1

>prot_S-firma_F_contig10829.1113.1 ID=prot_S-firma_F_contig10829.1113.1|Name=mRNA_S-firma_F_contig10829.1113.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=158bp
MVCGRQRAVSLAMLVLLLRDSWICADVLVRFLARPICRTRRAPVCIMGVF
GRLFPPLSSLSPVKFASGERGRSTHTSRCKAQRHKHQNVAEKETNTTSVV
ITTRARVSGSLFAYLRPLTEPSRPPRRLSILRLTRSKSLIPLKSVKVHHP
IYCSSPG*
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mRNA from alignment at S-firma_F_contig10829:4101..4885+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10829.1113.1 ID=mRNA_S-firma_F_contig10829.1113.1|Name=mRNA_S-firma_F_contig10829.1113.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=785bp|location=Sequence derived from alignment at S-firma_F_contig10829:4101..4885+ (Sphaerotrichia firma ET2_F female)
ACCGCCTTTCTCTGGGTGTATGGTGTGCGGTAGGCAGCGTGCGGTGTCGT
TGGCGATGTTGGTTCTTCTCCTGAGGGACTCTTGGATTTGTGCAGATGTT
TTGGTCCGGTTTTTGGCTAGGCCGATCTGTCGAACCCGGCGCGCACCGGT
ATGTATCATGGGTGTGTTCGGTCGGCTATTCCCTCCCCTTTCCAGCTTAT
CGCCGGTGAAGTTTGCTTCCGGCGAGAGGGGAAGAAGCACGCATACTAGC
CGCTGCAAGGCTCAGAGACATAAACACCAAAACGTTGCGGAGAAGGAGAC
CAATACGACCAGCGTTGTGATAACGACACGCGCGAGGGTATCGGGTTCCC
TGTTTGCTTATTTGAGACCCCTCACGGAGCCCTCACGCCCCCCCCGTCGG
CTCTCCATTCTCCGGCTGACAAGGTCTAAATCGCTAATTCCTCTTAAGTC
CGTAAAGGTACACCATCCGATCTACTGTAGCTCTCCCGGTTGATGGCGCG
GAACGGATCTAAACGGACAACTCCACGGTATGTGTTCAACTGCTGCCTTG
CCTTGGAAGAAAAGGATGGTGCGTGGCCCACTCGCTGCCAACGGGCTAAA
CCTCAAGCAACACGGCTGTGGTGTGTTACTTCGCAGTACCACAAATGCCA
ACAGAAGGCGAAGACCGCGAGCAGCCCTTTCGCGTGCGGCTTCCAGCGAA
ATACCGCAGATGCCAACAAAAGCCCAAGACCGCAAGCAACACTTCCGTGT
GTTTCTTCCCACTTCGAACTAGTAGATACCGCCCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10829:4101..4885+

>mRNA_S-firma_F_contig10829.1113.1 ID=mRNA_S-firma_F_contig10829.1113.1|Name=mRNA_S-firma_F_contig10829.1113.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=948bp|location=Sequence derived from alignment at S-firma_F_contig10829:4101..4885+ (Sphaerotrichia firma ET2_F female)
ATGGTGTGCGGTAGGCAGCGTGCGGTGTCGTTGGCGATGTTGGTTCTTCT
CCTGAGGGACTCTTGGATTTGTGCAGATGTTTTGGTCCGGTTTTTGGCTA
GGCCGATCTGTCGAACCCGGCGCGCACCGGTATGTATCATGGGTGTGTTC
GGTCGGCTATTCCCTCCCCTTTCCAGCTTATCGCCGGTGAAGTTTGCTTC
CGGCGAGAGGGGAAGAAGCACGCATACTAGCCGCTGCAAGGCTCAGAGAC
ATAAACACCAAAACGTTGCGGAGAAGGAGACCAATACGACCAGCGTTGTG
ATAACGACACGCGCGAGGGTATCGGGTTCCCTGTTTGCTTATTTGAGACC
CCTCACGGAGCCCTCACGCCCCCCCCGTCGGCTCTCCATTCTCCGGCTGA
CAAGGTCTAAATCGCTAATTCCTCTTAAGTCCGTAAAGGTACACCATCCG
ATCTACTGTAGCTCTCCCGGTTGAATGGTGTGCGGTAGGCAGCGTGCGGT
GTCGTTGGCGATGTTGGTTCTTCTCCTGAGGGACTCTTGGATTTGTGCAG
ATGTTTTGGTCCGGTTTTTGGCTAGGCCGATCTGTCGAACCCGGCGCGCA
CCGGTATGTATCATGGGTGTGTTCGGTCGGCTATTCCCTCCCCTTTCCAG
CTTATCGCCGGTGAAGTTTGCTTCCGGCGAGAGGGGAAGAAGCACGCATA
CTAGCCGCTGCAAGGCTCAGAGACATAAACACCAAAACGTTGCGGAGAAG
GAGACCAATACGACCAGCGTTGTGATAACGACACGCGCGAGGGTATCGGG
TTCCCTGTTTGCTTATTTGAGACCCCTCACGGAGCCCTCACGCCCCCCCC
GTCGGCTCTCCATTCTCCGGCTGACAAGGTCTAAATCGCTAATTCCTCTT
AAGTCCGTAAAGGTACACCATCCGATCTACTGTAGCTCTCCCGGTTGA
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