mRNA_S-firma_F_contig10829.1112.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10829.1112.1
Unique NamemRNA_S-firma_F_contig10829.1112.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10829.1112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10829contigS-firma_F_contig10829:3435..3785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.197233-CDS-S-firma_F_contig10829:3434..37371622815626.197233-CDS-S-firma_F_contig10829:3434..3737Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10829 3435..3737 +
1696949462.842772-CDS-S-firma_F_contig10829:3434..37371696949462.842772-CDS-S-firma_F_contig10829:3434..3737Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10829 3435..3737 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.2107835-UTR-S-firma_F_contig10829:3737..37851622815626.2107835-UTR-S-firma_F_contig10829:3737..3785Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10829 3738..3785 +
1696949462.8549366-UTR-S-firma_F_contig10829:3737..37851696949462.8549366-UTR-S-firma_F_contig10829:3737..3785Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10829 3738..3785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10829.1112.1prot_S-firma_F_contig10829.1112.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10829 3435..3737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10829.1112.1

>prot_S-firma_F_contig10829.1112.1 ID=prot_S-firma_F_contig10829.1112.1|Name=mRNA_S-firma_F_contig10829.1112.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=101bp
VGGWETKNRRVRLAVPSAGSRLIRLEETNYRCVESAAHLFLFAVFFPDDF
EFSARRHFFSQVPAGSLLYVLHVQPVNKYFQGENADVLHTMNSKFLQALW
*
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mRNA from alignment at S-firma_F_contig10829:3435..3785+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10829.1112.1 ID=mRNA_S-firma_F_contig10829.1112.1|Name=mRNA_S-firma_F_contig10829.1112.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=351bp|location=Sequence derived from alignment at S-firma_F_contig10829:3435..3785+ (Sphaerotrichia firma ET2_F female)
GTGGGTGGGTGGGAAACAAAGAACAGACGAGTTAGATTGGCTGTGCCGTC
TGCAGGCAGCAGGCTCATTCGGCTGGAGGAAACAAACTATCGATGTGTGG
AGAGTGCTGCCCACCTTTTCTTGTTTGCGGTCTTTTTCCCTGATGACTTC
GAGTTTAGTGCGAGACGCCATTTTTTTAGTCAAGTGCCAGCAGGGAGTCT
ATTGTACGTACTGCACGTCCAACCTGTAAACAAGTATTTCCAGGGCGAAA
ATGCTGACGTTTTGCACACTATGAATAGCAAATTTCTTCAAGCTCTGTGG
TAGACACGCTTATTTCAATCCTGACACCCTTCCGCCCTCCGCCACAACGA
C
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Coding sequence (CDS) from alignment at S-firma_F_contig10829:3435..3785+

>mRNA_S-firma_F_contig10829.1112.1 ID=mRNA_S-firma_F_contig10829.1112.1|Name=mRNA_S-firma_F_contig10829.1112.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=606bp|location=Sequence derived from alignment at S-firma_F_contig10829:3435..3785+ (Sphaerotrichia firma ET2_F female)
GTGGGTGGGTGGGAAACAAAGAACAGACGAGTTAGATTGGCTGTGCCGTC
TGCAGGCAGCAGGCTCATTCGGCTGGAGGAAACAAACTATCGATGTGTGG
AGAGTGCTGCCCACCTTTTCTTGTTTGCGGTCTTTTTCCCTGATGACTTC
GAGTTTAGTGCGAGACGCCATTTTTTTAGTCAAGTGCCAGCAGGGAGTCT
ATTGTACGTACTGCACGTCCAACCTGTAAACAAGTATTTCCAGGGCGAAA
ATGCTGACGTTTTGCACACTATGAATAGCAAATTTCTTCAAGCTCTGTGG
TAGGTGGGTGGGTGGGAAACAAAGAACAGACGAGTTAGATTGGCTGTGCC
GTCTGCAGGCAGCAGGCTCATTCGGCTGGAGGAAACAAACTATCGATGTG
TGGAGAGTGCTGCCCACCTTTTCTTGTTTGCGGTCTTTTTCCCTGATGAC
TTCGAGTTTAGTGCGAGACGCCATTTTTTTAGTCAAGTGCCAGCAGGGAG
TCTATTGTACGTACTGCACGTCCAACCTGTAAACAAGTATTTCCAGGGCG
AAAATGCTGACGTTTTGCACACTATGAATAGCAAATTTCTTCAAGCTCTG
TGGTAG
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