mRNA_S-firma_F_contig10829.1111.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10829.1111.1
Unique NamemRNA_S-firma_F_contig10829.1111.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10829.1111.1 vs. uniprot
Match: A0A6H5KU28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU28_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.490e-35
Identity = 115/184 (62.50%), Postives = 120/184 (65.22%), Query Frame = 2 
Query:  305 MGGVCSVRRNGERSPHSVEEGGGGAPPSYFDVAWDEQEDPIYAPIAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRAMEGSGRGPVV-RWPALAEEHLVRLYSNDDGCRD-SPSGGGSEPLSLMELCVRSICRRLSDFQKFPSLLPREVVDALLQSLTQ 850
            MGGV SV R+G+RSP  + EGG  APPSYFDVAWDE E   YAPIAG                 XXXXXXXXXXXXXXXX            XXXXXX             V RWPALAEE L RLYSNDDG R  S  GGGSEPLSLMELCVRSICRR+ DF+KFPS LPREVVDALL SLTQ
Sbjct:    1 MGGVSSVLRHGDRSPQPLGEGG--APPSYFDVAWDEDEG--YAPIAGCDASGDGGSGRARGGVGXXXXXXXXXXXXXXXXDGIDGEGSVAGDXXXXXXXXXXXXXXXXXVFVPRWPALAEEQLSRLYSNDDGTRACSNGGGGSEPLSLMELCVRSICRRMGDFRKFPSYLPREVVDALLGSLTQ 180
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BLAST of mRNA_S-firma_F_contig10829.1111.1 vs. uniprot
Match: D7FS92_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS92_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.450e-7
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 2 
Query:  743 MELCVRSICRRLSDFQKFPSLLPREVVDALLQSLTQ 850
            MELCVRSICRR+ +F+KFPS LPREVVDALL SLTQ
Sbjct:    1 MELCVRSICRRMGNFRKFPSYLPREVVDALLGSLTQ 36
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10829.1111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU28_9PHAE1.490e-3562.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS92_ECTSI2.450e-783.33Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10829contigS-firma_F_contig10829:1074..4885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FS92
PFAMsF-box-like,LRR_1,LRR_6
Max annot lvl2759|Eukaryota
KEGG koko:K10275,ko:K10280
Evalue4.6e-09
EggNOG OGsKOG1947@1|root,KOG1947@2759|Eukaryota
DescriptionF-box LRR-repeat protein
COG categoryB
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons5
Model size1212
Cds size663
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.086186-UTR-S-firma_F_contig10829:1073..12661622815626.086186-UTR-S-firma_F_contig10829:1073..1266Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10829 1074..1266 +
1696949462.7542315-UTR-S-firma_F_contig10829:1073..12661696949462.7542315-UTR-S-firma_F_contig10829:1073..1266Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10829 1074..1266 +
1622815626.1590295-UTR-S-firma_F_contig10829:4529..48851622815626.1590295-UTR-S-firma_F_contig10829:4529..4885Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10829 4530..4885 +
1696949462.829486-UTR-S-firma_F_contig10829:4529..48851696949462.829486-UTR-S-firma_F_contig10829:4529..4885Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10829 4530..4885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.1002486-CDS-S-firma_F_contig10829:1266..13501622815626.1002486-CDS-S-firma_F_contig10829:1266..1350Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10829 1267..1350 +
1696949462.7703152-CDS-S-firma_F_contig10829:1266..13501696949462.7703152-CDS-S-firma_F_contig10829:1266..1350Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10829 1267..1350 +
1622815626.1121624-CDS-S-firma_F_contig10829:1473..15671622815626.1121624-CDS-S-firma_F_contig10829:1473..1567Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10829 1474..1567 +
1696949462.781826-CDS-S-firma_F_contig10829:1473..15671696949462.781826-CDS-S-firma_F_contig10829:1473..1567Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10829 1474..1567 +
1622815626.124941-CDS-S-firma_F_contig10829:3097..34341622815626.124941-CDS-S-firma_F_contig10829:3097..3434Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10829 3098..3434 +
1696949462.793134-CDS-S-firma_F_contig10829:3097..34341696949462.793134-CDS-S-firma_F_contig10829:3097..3434Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10829 3098..3434 +
1622815626.1390958-CDS-S-firma_F_contig10829:3839..39811622815626.1390958-CDS-S-firma_F_contig10829:3839..3981Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10829 3840..3981 +
1696949462.805642-CDS-S-firma_F_contig10829:3839..39811696949462.805642-CDS-S-firma_F_contig10829:3839..3981Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10829 3840..3981 +
1622815626.1488395-CDS-S-firma_F_contig10829:4523..45291622815626.1488395-CDS-S-firma_F_contig10829:4523..4529Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10829 4524..4529 +
1696949462.8167953-CDS-S-firma_F_contig10829:4523..45291696949462.8167953-CDS-S-firma_F_contig10829:4523..4529Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10829 4524..4529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10829.1111.1prot_S-firma_F_contig10829.1111.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10829 1267..4529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10829.1111.1

>prot_S-firma_F_contig10829.1111.1 ID=prot_S-firma_F_contig10829.1111.1|Name=mRNA_S-firma_F_contig10829.1111.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=221bp
MYSHFERSSTAAAQRAPQRDTRHLGRERAPGPTSHSRMGGVCSVRRNGER
SPHSVEEGGGGAPPSYFDVAWDEQEDPIYAPIAGGDAAAAGGRGGGTPLG
DGAAAAATTPGGGAADVGCATFAAEGGGGGGEGGGGVRAMEGSGRGPVVR
WPALAEEHLVRLYSNDDGCRDSPSGGGSEPLSLMELCVRSICRRLSDFQK
FPSLLPREVVDALLQSLTQV*
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mRNA from alignment at S-firma_F_contig10829:1074..4885+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10829.1111.1 ID=mRNA_S-firma_F_contig10829.1111.1|Name=mRNA_S-firma_F_contig10829.1111.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3812bp|location=Sequence derived from alignment at S-firma_F_contig10829:1074..4885+ (Sphaerotrichia firma ET2_F female)
TTTGCTCTCGTGCAAGAAGGCGATCAACGATCCACGCGCTCAGACTGGTG
ACTAGGAAGCCAAGAGGATTTTTCTGTGCGTCTGGAGGTAGGTTTGACAT
GAGAGAGTGCCTCCAGAGAGGCAGTTTTGCCATCATCCGAGAGACGGCCG
CGGCGTTTCTCTCATTGAAGTTGCGAATTTGAAAACACACGCGATGTACA
GCCACTTCGAGCGCTCTTCCACTGCTGCTGCACAGCGCGCACCCCAGAGA
GATACGAGACACCTCGGCAGAGAAAGGGTGAGAGGGCTCGCGAGAGAGAG
AGTGAGCATCTTCTACTTGGTTATTTCCTGGGTCTTGCTGGCGATCCTGC
ACTTGCGTTTTGAAGGAAAAGTGTCTCTTGTCTGTCTCGTTTCTCGGCAG
GCACCGGGCCCAACAAGTCACTCGAGGATGGGAGGAGTGTGCAGCGTCCG
CCGCAATGGGGAGCGGTCGCCGCACTCCGTGGAGGAAGGAGGAGGTAAGA
AGGGCCATGCTGCATGGGCTTTTACGTGCACGCGGGCGGAACCTCGGGTA
CTCAAGAGCTGGTTGCTGCTGTGTACCGGTATCTTCGTATTTCCGAGGCG
ACACCAAACACGTCGCAGATAACCCCGGCACCACGGCTGGCTGCTGTTGC
TGTTGCAAGATTGCAGAAACATCTGCCTCTCTCATCGTTGGAGGCGCTTT
CTTCTACTCCTCTCGCTCATTGCCTCGCTGGCCTCTTTCAGCTCCGATCT
GTGCGTTCCTCGCGTGTCCGAAAGAGTCGAAGATTTGTGATCATAAAATC
TCCACTTTTGCCCGTGATGCACCATTCCGTAGGCAAGTACAAGTAGTCCC
GGCCAGTTTGGGCGTTACGCGTCCGGTAGCGCCCATGGAAAGAACGGAGT
AGACCGTTGGACTTGTATGGAGTGGTCTTTGGCGCGCTGCACTGGCCGAG
AAACGGCTCGCAGTTATTTCAATTTCTGTTCTTGGGTAGCTATATACCGT
CCGTACAATGTCATGCTTTCAAGGATTCCTACATACGGCGGGGGGGGAGG
CGTGTGAGCTTGGTACAGCAGCAGTACCGCACTGCCGTGCATGTATGCAT
TTCCACGCCAACTACTGTAGTACTGTAAAGGCCTCTAAAATTGCAAGTTT
TGGGGCATGAGTAAGCTATGGGACAGGATGCCCGTTCGTGTAGAGATAGC
TGGCACCATGCGAGACCGGGCCTCTTGTATCCCCGGCGGGTTGAGTGTGC
GTACAAACGGTGTCAAACGGTGTCCTGGTACGGAGGCGTTGGGGCGGGTG
TTATTTCTTCATCTGTATGTAAACCTACGTAACAGCATGCGGCGCGAGAG
AACGTGCTGTGCTACATAGTTCCATGTAGCAGACATGGCGTCCTTTCGTC
GCTGGTGCCTGGGATAACCGGCACCCACATCCAATCTTGTTTGCCCACGC
CGGGAGCCACGCTAGCAGCCAACATCCTAGCTCGCGCCCGTGAATCCAGA
TTACAGCAGCTAGGTATACTGCTGTAGTATTTATGTCCTGAAGTTTCAGG
CTCGTACTCGCTTTCCTCTGTGGGTTTGAACTACATGAGCATGAGAGCCT
CTAAACACGCTCTCGTAGGCTTGAAGGGTTAGGCTGGCTCGAAGCCTTGT
ATCGTCGCCGTCATCGTGCTCAGACCACCCGTTTGTGTACACACGCGGCA
CGTGGTATAGACTTGCGCCAGGCGTCGAGCTCGATTTGCCGGTATGCGTG
CCTGGTGGACTACACTTCAACGGATTGAGTAGTTTTTAGTCGGCGTCTCT
CTCTCTCCTCTCTGTTAACCCATTGCCCATTGCCCTTCTGAACGCTCACT
CTTATCCTCGACCCCGTAGAGCCGACCTCCCCCTGCATACTGCTGTACCG
CACCAGCCCCTCCCTTTCGAGGTCGACTCTCCTTTGAAAACCAAGCCTTC
CTGAAACCACATCTCTCCCCACCCCCCCCCCGGCGGCAATGCCCTTCTTG
ATTCGTCTTTTGCTTTTGTCTCAGGCGGGGCCCCTCCCTCGTACTTCGAC
GTCGCCTGGGACGAACAAGAAGATCCTATCTACGCGCCGATCGCGGGGGG
CGACGCCGCTGCCGCAGGAGGTAGGGGCGGGGGTACCCCTCTCGGCGACG
GTGCCGCTGCTGCCGCCACCACACCCGGTGGTGGTGCTGCTGACGTTGGC
TGTGCCACCTTTGCCGCTGAAGGAGGAGGAGGAGGAGGAGAAGGAGGCGG
GGGCGTAAGGGCCATGGAAGGAAGCGGCCGGGGTCCCGTGGTGAGGTGGC
CCGCTCTCGCCGAGGAGCACCTGGTCCGACTGTACAGCAACGACGACGGC
TGCCGCGACAGGTGGGTGGGTGGGAAACAAAGAACAGACGAGTTAGATTG
GCTGTGCCGTCTGCAGGCAGCAGGCTCATTCGGCTGGAGGAAACAAACTA
TCGATGTGTGGAGAGTGCTGCCCACCTTTTCTTGTTTGCGGTCTTTTTCC
CTGATGACTTCGAGTTTAGTGCGAGACGCCATTTTTTTAGTCAAGTGCCA
GCAGGGAGTCTATTGTACGTACTGCACGTCCAACCTGTAAACAAGTATTT
CCAGGGCGAAAATGCTGACGTTTTGCACACTATGAATAGCAAATTTCTTC
AAGCTCTGTGGTAGACACGCTTATTTCAATCCTGACACCCTTCCGCCCTC
CGCCACAACGACACGGTGCTCTTTTTGACGTGGACCCGTGGCCAAAAAAA
CAAAACAAACGAGCAGCCCCAGCGGTGGCGGATCAGAGCCGCTGTCGCTG
ATGGAGCTGTGCGTGCGGTCCATCTGCCGGCGACTGAGCGACTTCCAGAA
GTTCCCTTCCTTGCTGCCCAGGGAAGTGGTGGACGCCTTGCTGCAGTCTC
TCACTCAGGTGCGCCGCGTGCTTTCGTGCGTGTGTGGGTGGCCGTTTTCT
CGGCGCGTAGGGTGGCGTGCTTGGTTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTATGTGTATGTGAGTGTGTGTGTGACCGCCTTTCTCTGGGTGTATGG
TGTGCGGTAGGCAGCGTGCGGTGTCGTTGGCGATGTTGGTTCTTCTCCTG
AGGGACTCTTGGATTTGTGCAGATGTTTTGGTCCGGTTTTTGGCTAGGCC
GATCTGTCGAACCCGGCGCGCACCGGTATGTATCATGGGTGTGTTCGGTC
GGCTATTCCCTCCCCTTTCCAGCTTATCGCCGGTGAAGTTTGCTTCCGGC
GAGAGGGGAAGAAGCACGCATACTAGCCGCTGCAAGGCTCAGAGACATAA
ACACCAAAACGTTGCGGAGAAGGAGACCAATACGACCAGCGTTGTGATAA
CGACACGCGCGAGGGTATCGGGTTCCCTGTTTGCTTATTTGAGACCCCTC
ACGGAGCCCTCACGCCCCCCCCGTCGGCTCTCCATTCTCCGGCTGACAAG
GTCTAAATCGCTAATTCCTCTTAAGTCCGTAAAGGTACACCATCCGATCT
ACTGTAGCTCTCCCGGTTGATGGCGCGGAACGGATCTAAACGGACAACTC
CACGGTATGTGTTCAACTGCTGCCTTGCCTTGGAAGAAAAGGATGGTGCG
TGGCCCACTCGCTGCCAACGGGCTAAACCTCAAGCAACACGGCTGTGGTG
TGTTACTTCGCAGTACCACAAATGCCAACAGAAGGCGAAGACCGCGAGCA
GCCCTTTCGCGTGCGGCTTCCAGCGAAATACCGCAGATGCCAACAAAAGC
CCAAGACCGCAAGCAACACTTCCGTGTGTTTCTTCCCACTTCGAACTAGT
AGATACCGCCCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10829:1074..4885+

>mRNA_S-firma_F_contig10829.1111.1 ID=mRNA_S-firma_F_contig10829.1111.1|Name=mRNA_S-firma_F_contig10829.1111.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1326bp|location=Sequence derived from alignment at S-firma_F_contig10829:1074..4885+ (Sphaerotrichia firma ET2_F female)
ATGTACAGCCACTTCGAGCGCTCTTCCACTGCTGCTGCACAGCGCGCACC
CCAGAGAGATACGAGACACCTCGGCAGAGAAAGGATGTACAGCCACTTCG
AGCGCTCTTCCACTGCTGCTGCACAGCGCGCACCCCAGAGAGATACGAGA
CACCTCGGCAGAGAAAGGGCACCGGGCCCAACAAGTCACTCGAGGATGGG
AGGAGTGTGCAGCGTCCGCCGCAATGGGGAGCGGTCGCCGCACTCCGTGG
AGGAAGGAGGAGGCACCGGGCCCAACAAGTCACTCGAGGATGGGAGGAGT
GTGCAGCGTCCGCCGCAATGGGGAGCGGTCGCCGCACTCCGTGGAGGAAG
GAGGAGGCGGGGCCCCTCCCTCGTACTTCGACGTCGCCTGGGACGAACAA
GAAGATCCTATCTACGCGCCGATCGCGGGGGGCGACGCCGCTGCCGCAGG
AGGTAGGGGCGGGGGTACCCCTCTCGGCGACGGTGCCGCTGCTGCCGCCA
CCACACCCGGTGGTGGTGCTGCTGACGTTGGCTGTGCCACCTTTGCCGCT
GAAGGAGGAGGAGGAGGAGGAGAAGGAGGCGGGGGCGTAAGGGCCATGGA
AGGAAGCGGCCGGGGTCCCGTGGTGAGGTGGCCCGCTCTCGCCGAGGAGC
ACCTGGTCCGACTGTACAGCAACGACGACGGCTGCCGCGACAGGCGGGGC
CCCTCCCTCGTACTTCGACGTCGCCTGGGACGAACAAGAAGATCCTATCT
ACGCGCCGATCGCGGGGGGCGACGCCGCTGCCGCAGGAGGTAGGGGCGGG
GGTACCCCTCTCGGCGACGGTGCCGCTGCTGCCGCCACCACACCCGGTGG
TGGTGCTGCTGACGTTGGCTGTGCCACCTTTGCCGCTGAAGGAGGAGGAG
GAGGAGGAGAAGGAGGCGGGGGCGTAAGGGCCATGGAAGGAAGCGGCCGG
GGTCCCGTGGTGAGGTGGCCCGCTCTCGCCGAGGAGCACCTGGTCCGACT
GTACAGCAACGACGACGGCTGCCGCGACAGCCCCAGCGGTGGCGGATCAG
AGCCGCTGTCGCTGATGGAGCTGTGCGTGCGGTCCATCTGCCGGCGACTG
AGCGACTTCCAGAAGTTCCCTTCCTTGCTGCCCAGGGAAGTGGTGGACGC
CTTGCTGCAGTCTCTCACTCAGCCCCAGCGGTGGCGGATCAGAGCCGCTG
TCGCTGATGGAGCTGTGCGTGCGGTCCATCTGCCGGCGACTGAGCGACTT
CCAGAAGTTCCCTTCCTTGCTGCCCAGGGAAGTGGTGGACGCCTTGCTGC
AGTCTCTCACTCAGGTCTAAGTCTAA
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