mRNA_S-firma_F_contig10826.1107.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10826.1107.1 vs. uniprot
Match: D7G9G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G4_ECTSI) HSP 1 Score: 358 bits (919), Expect = 1.760e-115 Identity = 178/207 (85.99%), Postives = 187/207 (90.34%), Query Frame = 2
Query: 752 RPSLAAEVMATELVDFVDSRGLFGCRIPKNFLRTERPKDKRGTVFVAGDYSKAEVISVQMVTAFDLLTDAGLPTIGDLTKWENVGKPTVVADLLKQRRDSDAAGGVQVESVVLPGAAIDSDVLQFTLKSPIKVMRTDLLEKEQGVSELYRNTYVKAIMRGDGSFLVLWAGALNTDWDQEGGAKERLKVVADSFRLEGLVVNGVRLGA 1372
+PS AAEV ATE VDF DSRGLF CRIPKNFLR ER KDKRGTVFVAGDYSKAEV+SVQ+V FDLLTDAGLPTIGDLTKWENVGKP +ADLLKQRRDSDAAGG VESVVLPG +D DVLQF LKSPIKVMR DLLEKEQGVSELYRNTYVKAIMRGDGSFLV+WAGALNTDWDQEGGAK+RLKV DSFRLEGL+V+GVRLGA
Sbjct: 32 QPSSAAEVAATEFVDFEDSRGLFSCRIPKNFLRAERAKDKRGTVFVAGDYSKAEVLSVQVVKTFDLLTDAGLPTIGDLTKWENVGKPAAIADLLKQRRDSDAAGGTPVESVVLPGVTLDGDVLQFMLKSPIKVMRADLLEKEQGVSELYRNTYVKAIMRGDGSFLVVWAGALNTDWDQEGGAKDRLKVATDSFRLEGLIVDGVRLGA 238
BLAST of mRNA_S-firma_F_contig10826.1107.1 vs. uniprot
Match: A0A6H5KHB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHB6_9PHAE) HSP 1 Score: 356 bits (913), Expect = 1.280e-113 Identity = 177/206 (85.92%), Postives = 185/206 (89.81%), Query Frame = 2
Query: 755 PSLAAEVMATELVDFVDSRGLFGCRIPKNFLRTERPKDKRGTVFVAGDYSKAEVISVQMVTAFDLLTDAGLPTIGDLTKWENVGKPTVVADLLKQRRDSDAAGGVQVESVVLPGAAIDSDVLQFTLKSPIKVMRTDLLEKEQGVSELYRNTYVKAIMRGDGSFLVLWAGALNTDWDQEGGAKERLKVVADSFRLEGLVVNGVRLGA 1372
PS AAEV ATE VDF DSRGLF C IPKNFLR ER KDKRGTVFVAGDYSKAEV+SVQ+V AFDLLTDAGLPT+GDLTKWENVGKP +ADLLKQRRDSDAAGG VESVVLPG +D DVLQF LKSPIKVMR DLLEKEQGVSELYRNTYVKAIMRGDGSFLV+WAGALNTDWDQEGGAK+RLKV DSFRLEGL+V GVRLGA
Sbjct: 97 PSSAAEVAATEFVDFEDSRGLFSCLIPKNFLRAERAKDKRGTVFVAGDYSKAEVLSVQVVKAFDLLTDAGLPTVGDLTKWENVGKPAAIADLLKQRRDSDAAGGTPVESVVLPGVTLDGDVLQFMLKSPIKVMRADLLEKEQGVSELYRNTYVKAIMRGDGSFLVVWAGALNTDWDQEGGAKDRLKVATDSFRLEGLIVEGVRLGA 302
BLAST of mRNA_S-firma_F_contig10826.1107.1 vs. uniprot
Match: A0A835Z4Q3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Q3_9STRA) HSP 1 Score: 166 bits (421), Expect = 2.460e-43 Identity = 103/224 (45.98%), Postives = 135/224 (60.27%), Query Frame = 2
Query: 689 RRTAAASIAAVTGGLVASSGLRPSLAAEVMATELVDFVDSRGLFGCRIPKNFLRTERPKDK--RGTVFVAGDYSKAEVISVQMVTAFDLLTDAG-----LPTIGDLTKWENVGKPTVVADLLKQRRDSDAAGGVQVESVVLPGAAI-DSDVLQFTLKSPIKVMRTDLLEKEQGVSELYRNTYVKAIMRGDGSFLVLWAGALNTDWDQEGGAKERLKVVADSFRL 1336
RR AA + +A+ G L+ L AEV + L + DSRG F +P N++R ER D+ +G +FV G+Y KA +SV ++ + LL DAG LPT DLT W VG P +A LL RRD DAA +S VLP + D + L F +K+ + V R DLLEKE+GV ELYR TY KA+MRGDG+FL+ WAGALNT+W + A++ L V SF L
Sbjct: 12 RRFAAGTASAIAGVLL----LPQPTVAEVPS--LAAYSDSRGYFEISLPANWVRAERKGDQEAKGVLFVTGNYVKAITLSVAIIKSSQLLRDAGTAPLVLPT-DDLTTWAGVGTPMGIAKLLAFRRDQDAAQAAAQDSEVLPDTVVLDGNALTFMIKTRVPVQRPDLLEKERGVRELYRLTYGKALMRGDGTFLLCWAGALNTEWGEPTNARDTLAAVVASFHL 228
BLAST of mRNA_S-firma_F_contig10826.1107.1 vs. uniprot
Match: A0A7S0QY41_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QY41_9CRYP) HSP 1 Score: 120 bits (300), Expect = 7.510e-27 Identity = 73/177 (41.24%), Postives = 98/177 (55.37%), Query Frame = 2
Query: 767 AEVMATELVDFVDSRGL---FGCRIPKNFLRTERPKDKRGTVFVAGDYSKAEVISVQMVTAFDLLTDAGLPTIGDLTKWENVGKPTVVADLLKQRRDSDAAGGVQVESVVLPGA-AIDSDVLQFTLKSPIKVMRTDLLEKEQGVSELYRNTYVKAIMRGDGSFLVLWAGALNTDWDQ 1285
A+ E F + GL F IPK F +++RP GT+FVAG AE++SVQ+V+ LL D G+ GDL+ WE +G +ADLL RD DA + S V P + A+ L F + I V R D L + QG+SEL R T +A +R DG+ LVLWA AL DW++
Sbjct: 63 ADAEVYEYSAFKEDGGLDAVFRADIPKEFFKSKRPLTN-GTIFVAGSLQTAEIVSVQIVSIPQLLADIGVLPTGDLSTWEAIGSAKAIADLLTSNRDGDAKQRGGLASKVDPASVAVSGRTLSFRTAATIAVQRPDKLLETQGISELRRITRARAEIRRDGTALVLWASALEQDWNK 238
BLAST of mRNA_S-firma_F_contig10826.1107.1 vs. uniprot
Match: K0RXZ5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXZ5_THAOC) HSP 1 Score: 111 bits (278), Expect = 1.470e-23 Identity = 81/231 (35.06%), Postives = 116/231 (50.22%), Query Frame = 2
Query: 689 RRTAAASIAAVTGGLVASSGLRPSLAAEVMATELVDFVDSRG--LFGCRIPKNFLRTER------PKDKRG------TVFVAGDYSKAEVISVQMVTAFDLLTDAGLPTIGDLTKWENVGKPTVVADLLKQRRDSDAAGGVQVESVVLPGAAIDSD--VLQFTLKSPIKVMRTDLLEKEQGVSELYRNTYVKAIMRG-DGSFLVLWAGALNTDWDQEGGAKERLKVVADSF 1330
RR AS + + AS +LA E + FVD+ LF +P+ F R P +K G T+F AGD SKAEV++V+ LL + G +GDL+ +E +G PT +A LL +RR+ D G V V + + D L+FT+K I V + +LL +E GVS L+R T KA + DG+ LV++A AL+ D+ G L+ DSF
Sbjct: 44 RRAMVASTLSAAVSVAASK----ALAEEATDVPMKLFVDTANPSLFAINVPQRFFAIRRSAKGDLPDEKTGKGRRGGTIFSAGDMSKAEVVAVERFPVKVLLEEEGYSPLGDLSTFEAIGDPTAIATLLLRRREKDRPGNVSVAVLDKDSVVVTEDGKTLKFTMKQEISVQKPELLMEEMGVSRLFRTTVAKATLSSNDGNLLVVFASALDQDFSGPDGVA--LRKTVDSF 268
BLAST of mRNA_S-firma_F_contig10826.1107.1 vs. uniprot
Match: A0A7S2MYB7_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MYB7_9EUKA) HSP 1 Score: 76.6 bits (187), Expect = 7.690e-12 Identity = 60/200 (30.00%), Postives = 96/200 (48.00%), Query Frame = 2
Query: 800 VDSRGLFGCRIPKNFLRTERPKDKRGTVFVAGDYSKAEVISVQMVTAFDLLTD-------AGLPTIGDLTK------WENVGKPTVVADLLKQRRDSDAAGGVQVESVVLPGAAIDSDVLQFTLKSPIKVMRTDLLEKEQGVSELYRNTYVKAIMR----GDGS----FLVLWAGALNTDWDQEGGAKERLKVVADSFRL 1336
+D+ F IP +F+ ++R K GT+FVAG++ +A VISV LL D GLP + + + ++G VA LL + RD DA+ G ++ L + D L+F + + V D LE+++GV +L R T +++ GDG+ +W AL DWD++ K L+ SF +
Sbjct: 45 LDAASRFALDIPDDFVVSKR-KAVTGTLFVAGNFPRASVISVTAWPLDALLQDDARSRALPGLPQELVIAEHATPLSFTDIGSAKSVAQLLLRARDRDASSGALQSALTLSQLSSDGSRLEFECATELPVSDPDALEEQRGVRQLIRRTRAASVLGSVPGGDGAPVPALFSVWGSALEQDWDKD--LKAPLEKTVSSFSV 241 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10826.1107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10826.1107.1 >prot_S-firma_F_contig10826.1107.1 ID=prot_S-firma_F_contig10826.1107.1|Name=mRNA_S-firma_F_contig10826.1107.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=237bp MDRVKFLRRTAAASIAAVTGGLVASSGLRPSLAAEVMATELVDFVDSRGLback to top mRNA from alignment at S-firma_F_contig10826:996..4682+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10826.1107.1 ID=mRNA_S-firma_F_contig10826.1107.1|Name=mRNA_S-firma_F_contig10826.1107.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3687bp|location=Sequence derived from alignment at S-firma_F_contig10826:996..4682+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10826:996..4682+ >mRNA_S-firma_F_contig10826.1107.1 ID=mRNA_S-firma_F_contig10826.1107.1|Name=mRNA_S-firma_F_contig10826.1107.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1422bp|location=Sequence derived from alignment at S-firma_F_contig10826:996..4682+ (Sphaerotrichia firma ET2_F female)back to top |