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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 1575 |
| Cds size | 897 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815625.640911-UTR-S-firma_F_contig10825:2025..2086 | 1622815625.640911-UTR-S-firma_F_contig10825:2025..2086 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig10825 2026..2086 + |
| 1696949462.4509456-UTR-S-firma_F_contig10825:2025..2086 | 1696949462.4509456-UTR-S-firma_F_contig10825:2025..2086 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig10825 2026..2086 + |
| 1622815625.6734853-UTR-S-firma_F_contig10825:2983..3600 | 1622815625.6734853-UTR-S-firma_F_contig10825:2983..3600 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig10825 2984..3600 + |
| 1696949462.4851263-UTR-S-firma_F_contig10825:2983..3600 | 1696949462.4851263-UTR-S-firma_F_contig10825:2983..3600 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig10825 2984..3600 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815625.6543753-CDS-S-firma_F_contig10825:2086..2983 | 1622815625.6543753-CDS-S-firma_F_contig10825:2086..2983 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10825 2087..2983 + |
| 1696949462.4739323-CDS-S-firma_F_contig10825:2086..2983 | 1696949462.4739323-CDS-S-firma_F_contig10825:2086..2983 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10825 2087..2983 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10825.1106.1 >prot_S-firma_F_contig10825.1106.1 ID=prot_S-firma_F_contig10825.1106.1|Name=mRNA_S-firma_F_contig10825.1106.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=299bp
MSWSCRDEHCRQRNQRGSNRGLPSSCSMYYLVTKMLKAGAYKDAAAAMSD
AGSARLHATADDHHSEAVSRWSDTAVHGRSTILLMQDTWLGSMCRQQRAR
TVLRLVQHEMEGNAHEAVHILLTHRRDRAFGCYGSFDIRRRDQHRPSPKE
GAARVRNEHVASIREVIPPCAEGGRLACARRAYVNSRGNHGLKTLLDADN
VVYREPCGCSWTLAWTLDQPAPPGGRKGPTNRYALAPLIRERKVGRHGAT
KEHSWTGWRAAGGCCSGLRQYISSPCFTERNTSLGSYCLCRCGYSMAR* back to topmRNA from alignment at S-firma_F_contig10825:2026..3600+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig10825.1106.1 ID=mRNA_S-firma_F_contig10825.1106.1|Name=mRNA_S-firma_F_contig10825.1106.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1575bp|location=Sequence derived from alignment at S-firma_F_contig10825:2026..3600+ (Sphaerotrichia firma ET2_F female)
CACCACAACACGCCAGCAGACGCAGCCTACGCAAGGAGAATTATCCCACA
GCACCTCCTGGATGTCGTGGAGTTGTAGGGATGAGCACTGTAGGCAAAGG
AACCAGCGTGGGAGCAACCGGGGGTTGCCCTCCTCGTGTAGTATGTACTA
CCTGGTTACCAAGATGCTAAAGGCCGGCGCATACAAAGACGCAGCTGCAG
CGATGTCTGATGCAGGCTCCGCGCGGCTTCACGCGACTGCAGACGACCAC
CATTCTGAGGCGGTGAGCAGATGGAGCGACACCGCTGTACATGGCCGCAG
TACGATATTGCTGATGCAGGACACGTGGTTGGGATCAATGTGCCGCCAAC
AACGAGCGCGTACCGTGCTTCGGCTGGTTCAGCATGAGATGGAAGGAAAC
GCCCACGAGGCGGTGCACATACTCTTGACACACCGCCGTGACAGAGCTTT
TGGATGCTATGGTTCGTTTGACATACGCCGGAGAGATCAACACCGGCCCA
GCCCCAAAGAAGGCGCAGCACGGGTTCGCAACGAACATGTCGCGAGCATC
CGTGAAGTTATACCTCCCTGCGCCGAGGGTGGACGACTGGCTTGTGCACG
TCGTGCCTACGTAAACTCCCGGGGCAACCATGGCCTGAAGACCTTGCTAG
ACGCTGATAACGTTGTATATCGAGAGCCGTGCGGTTGCTCGTGGACGCTG
GCGTGGACCCTTGACCAGCCAGCGCCTCCTGGTGGACGGAAGGGACCAAC
CAACCGGTATGCCCTGGCTCCTTTGATCCGCGAGAGGAAAGTCGGGAGAC
ATGGCGCCACGAAGGAGCACAGTTGGACAGGCTGGAGGGCAGCCGGCGGT
TGCTGTTCAGGGTTGAGGCAGTATATATCTTCTCCTTGCTTCACCGAGCG
CAACACCTCTCTCGGTTCGTACTGTCTGTGTAGATGTGGATACAGCATGG
CCAGGTGATGCATATAAGGCTCAGAGGCAAAAAAACACTGGCACCTATCT
CGCGCTCTCGACGACCCTTTTCAGGCGGGTGGTGTGATGTTGGGGTGTGC
TTCTTCTATGTTCCATTGATCGCTAGGTCTAGAATGACTGGGTTTATGTG
CTGATGATGCTGGTGCTTAACAAAGCTGTTGTCTCACCGTTGTCCCTAGC
ACGGCTGCTTTGCTTTGTTAGTCGCAGCCTGATTTCACGGTCGCCTTGGC
TTGACGTCGAAACAAGAGGACTGTAACCGTGAGCTCATGCGATGCCCATG
GGCTGCCTGATGGGACAGCCGATGGATGTGCGTCCCATGAGCGTTTTAGT
ATAACTGCAACGAGCGACCCATTGTTCTTGGACAATGACAAAGGATAATT
TTTGACCGTCCTCGGTTGTCGTTTGTTTTGGTCTACAGCGCCGGGCGAGA
ATTGGGCATCTGACATACTTCTCGCGTTAAGCATAGACAACAGTTTGGTG
GCTTGTGGAGTTCAAGTGCACACTTTCCGTTTGCACGAAATGTATTCTTT
CGTGCATGCCAACGTCACACGACGGTGTTCGTATTGAAAACGAATGCGTA
ATCGTTGATCCTGAAAACGTCCGAC back to topCoding sequence (CDS) from alignment at S-firma_F_contig10825:2026..3600+ >mRNA_S-firma_F_contig10825.1106.1 ID=mRNA_S-firma_F_contig10825.1106.1|Name=mRNA_S-firma_F_contig10825.1106.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1794bp|location=Sequence derived from alignment at S-firma_F_contig10825:2026..3600+ (Sphaerotrichia firma ET2_F female)
ATGTCGTGGAGTTGTAGGGATGAGCACTGTAGGCAAAGGAACCAGCGTGG
GAGCAACCGGGGGTTGCCCTCCTCGTGTAGTATGTACTACCTGGTTACCA
AGATGCTAAAGGCCGGCGCATACAAAGACGCAGCTGCAGCGATGTCTGAT
GCAGGCTCCGCGCGGCTTCACGCGACTGCAGACGACCACCATTCTGAGGC
GGTGAGCAGATGGAGCGACACCGCTGTACATGGCCGCAGTACGATATTGC
TGATGCAGGACACGTGGTTGGGATCAATGTGCCGCCAACAACGAGCGCGT
ACCGTGCTTCGGCTGGTTCAGCATGAGATGGAAGGAAACGCCCACGAGGC
GGTGCACATACTCTTGACACACCGCCGTGACAGAGCTTTTGGATGCTATG
GTTCGTTTGACATACGCCGGAGAGATCAACACCGGCCCAGCCCCAAAGAA
GGCGCAGCACGGGTTCGCAACGAACATGTCGCGAGCATCCGTGAAGTTAT
ACCTCCCTGCGCCGAGGGTGGACGACTGGCTTGTGCACGTCGTGCCTACG
TAAACTCCCGGGGCAACCATGGCCTGAAGACCTTGCTAGACGCTGATAAC
GTTGTATATCGAGAGCCGTGCGGTTGCTCGTGGACGCTGGCGTGGACCCT
TGACCAGCCAGCGCCTCCTGGTGGACGGAAGGGACCAACCAACCGGTATG
CCCTGGCTCCTTTGATCCGCGAGAGGAAAGTCGGGAGACATGGCGCCACG
AAGGAGCACAGTTGGACAGGCTGGAGGGCAGCCGGCGGTTGCTGTTCAGG
GTTGAGGCAGTATATATCTTCTCCTTGCTTCACCGAGCGCAACACCTCTC
TCGGTTCGTACTGTCTGTGTAGATGTGGATACAGCATGGCCAGGTGAATG
TCGTGGAGTTGTAGGGATGAGCACTGTAGGCAAAGGAACCAGCGTGGGAG
CAACCGGGGGTTGCCCTCCTCGTGTAGTATGTACTACCTGGTTACCAAGA
TGCTAAAGGCCGGCGCATACAAAGACGCAGCTGCAGCGATGTCTGATGCA
GGCTCCGCGCGGCTTCACGCGACTGCAGACGACCACCATTCTGAGGCGGT
GAGCAGATGGAGCGACACCGCTGTACATGGCCGCAGTACGATATTGCTGA
TGCAGGACACGTGGTTGGGATCAATGTGCCGCCAACAACGAGCGCGTACC
GTGCTTCGGCTGGTTCAGCATGAGATGGAAGGAAACGCCCACGAGGCGGT
GCACATACTCTTGACACACCGCCGTGACAGAGCTTTTGGATGCTATGGTT
CGTTTGACATACGCCGGAGAGATCAACACCGGCCCAGCCCCAAAGAAGGC
GCAGCACGGGTTCGCAACGAACATGTCGCGAGCATCCGTGAAGTTATACC
TCCCTGCGCCGAGGGTGGACGACTGGCTTGTGCACGTCGTGCCTACGTAA
ACTCCCGGGGCAACCATGGCCTGAAGACCTTGCTAGACGCTGATAACGTT
GTATATCGAGAGCCGTGCGGTTGCTCGTGGACGCTGGCGTGGACCCTTGA
CCAGCCAGCGCCTCCTGGTGGACGGAAGGGACCAACCAACCGGTATGCCC
TGGCTCCTTTGATCCGCGAGAGGAAAGTCGGGAGACATGGCGCCACGAAG
GAGCACAGTTGGACAGGCTGGAGGGCAGCCGGCGGTTGCTGTTCAGGGTT
GAGGCAGTATATATCTTCTCCTTGCTTCACCGAGCGCAACACCTCTCTCG
GTTCGTACTGTCTGTGTAGATGTGGATACAGCATGGCCAGGTGA back to top
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