mRNA_S-firma_F_contig1082.1101.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: D7FKQ3_ECTSI (Histone deacetylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKQ3_ECTSI) HSP 1 Score: 328 bits (842), Expect = 4.020e-108 Identity = 149/218 (68.35%), Postives = 180/218 (82.57%), Query Frame = 1
Query: 115 DEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVPIDTGATNSTPPVRRIEDRADE 768
+EAFYTTNRVMT SFHK+GEYFPGTGD +D+G +G+NY+INFPL DGI D+ ++SIFRPVI K+MEH+ P+A+V+QCGADSLSGDRLGCFNLSL GHADCV YVKSFN+P LVLGGGGYT+RNV RCW YET VLL+ E D LP+NDYFEYYGP +RLH+ SNMED+N R LE+ +I+LFE LRS++A P VPI+TGA TP R+ + +E
Sbjct: 188 EEAFYTTNRVMTVSFHKFGEYFPGTGDVKDVGVAQGKNYAINFPLADGINDQSYRSIFRPVIEKVMEHYSPEAIVMQCGADSLSGDRLGCFNLSLKGHADCVQYVKSFNVPLLVLGGGGYTLRNVPRCWAYETGVLLDTEPSDMLPYNDYFEYYGPDYRLHMPTSNMEDMNKRETLEETKIQLFEILRSLEAVPGVPIETGAEVKTPATLRMPEEDEE 405
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: A0A8C1ELM6_CYPCA (Histone deacetylase 1 n=3 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1ELM6_CYPCA) HSP 1 Score: 327 bits (837), Expect = 4.210e-108 Identity = 160/287 (55.75%), Postives = 203/287 (70.73%), Query Frame = 1
Query: 1 PPQPHRVRMAHNLVVNYGLYKDMQVFVSGSS------------------------LCGGLVFDEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVPIDTGATNSTPPVRRIEDRADE-DDPDVR 786
P +PHR+RM HNL++NYGLY+ M+++ + + G +EAFYTT+RVMT SFHKYGEYFPGTGD RD+G KG+ Y++N+PLRDGI DE +++IF+P++ K+ME +QP AVVLQCGADSLSGDRLGCFNL++ GHA CV Y+KSFNLP L+LGGGGYT+RNVARCWTYETAV L+ I +ELP+NDYFEY+GP F+LHI+PSNM + N YLE ++ +LFE LR + AP V + + P ED DE DDPD R
Sbjct: 30 PMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKFLKKHLYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLGGGGYTIRNVARCWTYETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYLEKIKQRLFENLRMLPHAPGVQM-----QAIPEDAVQEDSGDEEDDPDKR 311
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: A0A7S1GDT3_9STRA (Histone deacetylase n=2 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDT3_9STRA) HSP 1 Score: 326 bits (836), Expect = 4.020e-107 Identity = 147/224 (65.62%), Postives = 186/224 (83.04%), Query Frame = 1
Query: 115 DEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVPIDTGATNSTPPVRRIEDRADEDDPDVR 786
+EAFY T+RVMT SFHK+G++FPGTGD D+G G+ Y++NFPL++GI D ++ +F+PVI ++ME ++P AVVLQCGADSLSGDRLGCFNLSL GHADCV YVKSFN+PTLVLGGGGYTMRNVARCW YET+VL+ E+ DELP+NDYFEYYGP +RLHITPSNM ++N+ YL+D+++KLFE LR ++AAPSVPI TGA + P+ ++ D+ DPDVR
Sbjct: 183 EEAFYCTDRVMTVSFHKFGDFFPGTGDIHDVGEADGKYYAVNFPLKEGIDDLSYEHVFKPVISRVMEMYRPTAVVLQCGADSLSGDRLGCFNLSLKGHADCVEYVKSFNVPTLVLGGGGYTMRNVARCWAYETSVLVGTELPDELPYNDYFEYYGPDYRLHITPSNMANMNEPRYLDDIKVKLFEMLRELEAAPSVPIQTGAVDMPAPLD-LKPHTDDADPDVR 405
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: A0A5A8DN09_CAFRO (Histone deacetylase n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8DN09_CAFRO) HSP 1 Score: 321 bits (823), Expect = 3.590e-105 Identity = 147/222 (66.22%), Postives = 180/222 (81.08%), Query Frame = 1
Query: 115 DEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVPIDTGATNSTPPVRRIEDRADEDDPD 780
+EAFYTT+RVMTCSFHK+G+YFPGTG W+D+G+ +G+ YS+N PLRDG+ D+ F+ +FRPVI IME +QP+AVVLQCGADSL+GDRLGCFNLSL GHA V YV+SF LPTLVLGGGGYTMRNVARCWTYET+VL I DELP+NDYFEYYGP +RL I SNME+LN R YLE+V ++ E+LR I+AAP + + TG++ TP + +E DEDD D
Sbjct: 159 EEAFYTTDRVMTCSFHKFGDYFPGTGHWKDIGYGQGKRYSVNCPLRDGMDDDSFREVFRPVIATIMERYQPEAVVLQCGADSLAGDRLGCFNLSLKGHAGAVEYVRSFGLPTLVLGGGGYTMRNVARCWTYETSVLTGIAIDDELPYNDYFEYYGPDYRLQIESSNMENLNSRKYLEEVTARILESLRGIEAAPGIEVQTGSSARTPKI--LELAPDEDDED 378
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: A0A7S2H8U2_9STRA (Histone deacetylase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H8U2_9STRA) HSP 1 Score: 318 bits (816), Expect = 2.670e-104 Identity = 149/223 (66.82%), Postives = 179/223 (80.27%), Query Frame = 1
Query: 115 DEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVPIDTGATNSTP---PVRRIEDRADEDD 774
+EAFYTTNRVMTCSFHK+GEYFPGTGD +D+G + G+NY+INFPL DG+ D+ F+SIFRPVIGKIME F P AVVLQCGADSLSGDRLGCFNLSL GHADCV YVKSFN+PTLVLGGGGYT+RNV RCWTYETAVLL +I+D LP+NDYFEYYGP +RLH+ SNME+LN R YL+ ++++LF+ L ++ P V + + + P P + ED DD
Sbjct: 183 EEAFYTTNRVMTCSFHKFGEYFPGTGDVQDIGAKDGKNYAINFPLHDGMDDDSFRSIFRPVIGKIMEVFAPGAVVLQCGADSLSGDRLGCFNLSLRGHADCVEYVKSFNIPTLVLGGGGYTLRNVPRCWTYETAVLLGVDIKDALPYNDYFEYYGPDYRLHMPVSNMENLNTREYLDRLKVQLFDILGQVEPVPGVQLGHSSMVAPPLLAPPEKDEDEXXADD 405
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: A0A812ZZM0_9DINO (Histone deacetylase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZZM0_9DINO) HSP 1 Score: 319 bits (818), Expect = 3.960e-104 Identity = 147/209 (70.33%), Postives = 175/209 (83.73%), Query Frame = 1
Query: 115 DEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVPIDTG--ATNSTP 735
+EAFYTT+RVMTCSFHKYG+YFPGTGDWRDLG+ KG+N SINFPLR+G+ D+ F+ IF+P+I IM+ F+P AVVLQCGADSL+GDRLGCFNL+L GHA CV YVKSF LPTLVLGGGGYTMRNVARCWTYET+VLL+ I DELP++DYFEY+GP + LHI PSNME+ N + YLE V +L AL+ + APSV I TG AT++TP
Sbjct: 180 EEAFYTTDRVMTCSFHKYGDYFPGTGDWRDLGYGKGKNSSINFPLREGMDDDSFRYIFKPIIQGIMQRFRPGAVVLQCGADSLTGDRLGCFNLTLRGHASCVEYVKSFGLPTLVLGGGGYTMRNVARCWTYETSVLLDTPIPDELPYSDYFEYFGPDYNLHIKPSNMENKNSKTYLESVTGRLLAALKELPIAPSVAIQTGSSATDATP 388
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: A0A1E7FBJ6_9STRA (Histone deacetylase n=4 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FBJ6_9STRA) HSP 1 Score: 315 bits (806), Expect = 3.890e-103 Identity = 143/205 (69.76%), Postives = 167/205 (81.46%), Query Frame = 1
Query: 115 DEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVPIDTGATNS 729
+EAFY+TNRVMTCSFHK+GEYFPGTGD D+GH G+NYSINFPL DG+ D+ +KSIFRPVIGKIME F P A+VLQCGADSLSGDRLGCFNLS+ GHADCV YV+SF +P LVLGGGGYT+RNV RCWTYETAVL E++DELPFNDYFEY+GP +RL++ SNME+LN YLE + +L E L ++ PSV I TG S
Sbjct: 181 EEAFYSTNRVMTCSFHKFGEYFPGTGDVHDVGHADGKNYSINFPLNDGMDDKSYKSIFRPVIGKIMEMFAPGAIVLQCGADSLSGDRLGCFNLSVKGHADCVRYVRSFGIPMLVLGGGGYTLRNVPRCWTYETAVLTGEEVKDELPFNDYFEYFGPDYRLNLPVSNMENLNSPEYLEKTKNQLLEILSDVEPVPSVQIQTGQVES 385
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: E0VFJ3_PEDHC (Histone deacetylase RPD3, putative n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VFJ3_PEDHC) HSP 1 Score: 310 bits (795), Expect = 1.760e-102 Identity = 143/264 (54.17%), Postives = 186/264 (70.45%), Query Frame = 1
Query: 1 PPQPHRVRMAHNLVVNYGLYKDMQVFVSGSSLCGGLV----------------------------FDEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVPI 708
P +PHR+RM HNL++NYGLY+ M+++ + + +EAFYTT+RVMT SFHKYGEYFPGTGD RD+G KG+ Y++N PLRDG+ DE ++SIF P+I K+ME FQP AVVLQCGADSL+GDRLGCFNL++ GH CV +VK + +P L++GGGGYT+RNV+RCWTYET+V L EI +ELP+NDYFEY+GP F+LHI+PSNM + N YLE ++ +LFE LR + AP V +
Sbjct: 18 PMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATQEEMTKFHSDDYIRFLRSIRPDNMSEYNKQMQRLEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKKYGMPFLMVGGGGYTIRNVSRCWTYETSVALGTEIANELPYNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQV 281
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: A0A2D4CE33_PYTIN (Histone deacetylase n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CE33_PYTIN) HSP 1 Score: 312 bits (799), Expect = 9.590e-102 Identity = 138/197 (70.05%), Postives = 167/197 (84.77%), Query Frame = 1
Query: 115 DEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVP 705
+EAFYTTNRVMTCSFHKYGEYFPGTGD +D+G+ G+NY++NFP+RDG+ DE F ++FR VI KIMEHF P AVVLQCG DSLSGDRLGCFNLS+ GHADCVAYVKSFN+PTLVLGGGGYT+RNVARCW YET+VL E+ D +P+NDYFEYYGP++RLH+ SNME+LN YL +++ L+E L+ I+ P+VP
Sbjct: 188 EEAFYTTNRVMTCSFHKYGEYFPGTGDIKDIGYGDGKNYAVNFPMRDGMDDESFTTVFRGVISKIMEHFAPGAVVLQCGTDSLSGDRLGCFNLSVKGHADCVAYVKSFNVPTLVLGGGGYTLRNVARCWCYETSVLTGIEVPDAMPYNDYFEYYGPEYRLHMPVSNMENLNTPTYLNEMKRMLYEQLQQIEPIPNVP 384
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: A0A8C1AKD3_CYPCA (Histone deacetylase 1 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1AKD3_CYPCA) HSP 1 Score: 305 bits (782), Expect = 1.040e-101 Identity = 137/228 (60.09%), Postives = 179/228 (78.51%), Query Frame = 1
Query: 1 PPQPHRVRMAHNLVVNYGLYKDMQVF----VSGSSLCGGLVFD------EAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQ 654
P +PHR+RM HNL++NYGLY+ M+++ +G + D EAFYTT+RVMT +HKYGEYFPGTGD ++ ++G+ Y++N+PLRDGI DE +++IF+P++ K+ME +QP AVVLQCGADSLSGDRLGCFNL++ GHA CV Y+KSFNLP L+LGGGGYT+RNVARCWTYETAV L+ I +ELP+NDYFEY+GP F+LHI+PSNM + N YLE ++
Sbjct: 30 PMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANGEEMTKYHSDDYIKFLREAFYTTDRVMTVPYHKYGEYFPGTGDLLEISVQEGKYYAVNYPLRDGIDDESYEAIFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLGGGGYTIRNVARCWTYETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYLEKIK 257 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1082.1101.1 >prot_S-firma_F_contig1082.1101.1 ID=prot_S-firma_F_contig1082.1101.1|Name=mRNA_S-firma_F_contig1082.1101.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=254bp MAHNLVVNYGLYKDMQVFVSGSSLCGGLVFDEAFYTTNRVMTCSFHKYGEback to top mRNA from alignment at S-firma_F_contig1082:19236..20729- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1082.1101.1 ID=mRNA_S-firma_F_contig1082.1101.1|Name=mRNA_S-firma_F_contig1082.1101.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1494bp|location=Sequence derived from alignment at S-firma_F_contig1082:19236..20729- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1082:19236..20729- >mRNA_S-firma_F_contig1082.1101.1 ID=mRNA_S-firma_F_contig1082.1101.1|Name=mRNA_S-firma_F_contig1082.1101.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1524bp|location=Sequence derived from alignment at S-firma_F_contig1082:19236..20729- (Sphaerotrichia firma ET2_F female)back to top |