mRNA_S-firma_F_contig1082.1101.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1082.1101.1
Unique NamemRNA_S-firma_F_contig1082.1101.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: D7FKQ3_ECTSI (Histone deacetylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKQ3_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 4.020e-108
Identity = 149/218 (68.35%), Postives = 180/218 (82.57%), Query Frame = 1
Query:  115 DEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVPIDTGATNSTPPVRRIEDRADE 768
            +EAFYTTNRVMT SFHK+GEYFPGTGD +D+G  +G+NY+INFPL DGI D+ ++SIFRPVI K+MEH+ P+A+V+QCGADSLSGDRLGCFNLSL GHADCV YVKSFN+P LVLGGGGYT+RNV RCW YET VLL+ E  D LP+NDYFEYYGP +RLH+  SNMED+N R  LE+ +I+LFE LRS++A P VPI+TGA   TP   R+ +  +E
Sbjct:  188 EEAFYTTNRVMTVSFHKFGEYFPGTGDVKDVGVAQGKNYAINFPLADGINDQSYRSIFRPVIEKVMEHYSPEAIVMQCGADSLSGDRLGCFNLSLKGHADCVQYVKSFNVPLLVLGGGGYTLRNVPRCWAYETGVLLDTEPSDMLPYNDYFEYYGPDYRLHMPTSNMEDMNKRETLEETKIQLFEILRSLEAVPGVPIETGAEVKTPATLRMPEEDEE 405          
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: A0A8C1ELM6_CYPCA (Histone deacetylase 1 n=3 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1ELM6_CYPCA)

HSP 1 Score: 327 bits (837), Expect = 4.210e-108
Identity = 160/287 (55.75%), Postives = 203/287 (70.73%), Query Frame = 1
Query:    1 PPQPHRVRMAHNLVVNYGLYKDMQVFVSGSS------------------------LCGGLVFDEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVPIDTGATNSTPPVRRIEDRADE-DDPDVR 786
            P +PHR+RM HNL++NYGLY+ M+++    +                        +  G   +EAFYTT+RVMT SFHKYGEYFPGTGD RD+G  KG+ Y++N+PLRDGI DE +++IF+P++ K+ME +QP AVVLQCGADSLSGDRLGCFNL++ GHA CV Y+KSFNLP L+LGGGGYT+RNVARCWTYETAV L+  I +ELP+NDYFEY+GP F+LHI+PSNM + N   YLE ++ +LFE LR +  AP V +      + P     ED  DE DDPD R
Sbjct:   30 PMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKFLKKHLYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLGGGGYTIRNVARCWTYETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYLEKIKQRLFENLRMLPHAPGVQM-----QAIPEDAVQEDSGDEEDDPDKR 311          
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: A0A7S1GDT3_9STRA (Histone deacetylase n=2 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDT3_9STRA)

HSP 1 Score: 326 bits (836), Expect = 4.020e-107
Identity = 147/224 (65.62%), Postives = 186/224 (83.04%), Query Frame = 1
Query:  115 DEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVPIDTGATNSTPPVRRIEDRADEDDPDVR 786
            +EAFY T+RVMT SFHK+G++FPGTGD  D+G   G+ Y++NFPL++GI D  ++ +F+PVI ++ME ++P AVVLQCGADSLSGDRLGCFNLSL GHADCV YVKSFN+PTLVLGGGGYTMRNVARCW YET+VL+  E+ DELP+NDYFEYYGP +RLHITPSNM ++N+  YL+D+++KLFE LR ++AAPSVPI TGA +   P+  ++   D+ DPDVR
Sbjct:  183 EEAFYCTDRVMTVSFHKFGDFFPGTGDIHDVGEADGKYYAVNFPLKEGIDDLSYEHVFKPVISRVMEMYRPTAVVLQCGADSLSGDRLGCFNLSLKGHADCVEYVKSFNVPTLVLGGGGYTMRNVARCWAYETSVLVGTELPDELPYNDYFEYYGPDYRLHITPSNMANMNEPRYLDDIKVKLFEMLRELEAAPSVPIQTGAVDMPAPLD-LKPHTDDADPDVR 405          
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: A0A5A8DN09_CAFRO (Histone deacetylase n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8DN09_CAFRO)

HSP 1 Score: 321 bits (823), Expect = 3.590e-105
Identity = 147/222 (66.22%), Postives = 180/222 (81.08%), Query Frame = 1
Query:  115 DEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVPIDTGATNSTPPVRRIEDRADEDDPD 780
            +EAFYTT+RVMTCSFHK+G+YFPGTG W+D+G+ +G+ YS+N PLRDG+ D+ F+ +FRPVI  IME +QP+AVVLQCGADSL+GDRLGCFNLSL GHA  V YV+SF LPTLVLGGGGYTMRNVARCWTYET+VL    I DELP+NDYFEYYGP +RL I  SNME+LN R YLE+V  ++ E+LR I+AAP + + TG++  TP +  +E   DEDD D
Sbjct:  159 EEAFYTTDRVMTCSFHKFGDYFPGTGHWKDIGYGQGKRYSVNCPLRDGMDDDSFREVFRPVIATIMERYQPEAVVLQCGADSLAGDRLGCFNLSLKGHAGAVEYVRSFGLPTLVLGGGGYTMRNVARCWTYETSVLTGIAIDDELPYNDYFEYYGPDYRLQIESSNMENLNSRKYLEEVTARILESLRGIEAAPGIEVQTGSSARTPKI--LELAPDEDDED 378          
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: A0A7S2H8U2_9STRA (Histone deacetylase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H8U2_9STRA)

HSP 1 Score: 318 bits (816), Expect = 2.670e-104
Identity = 149/223 (66.82%), Postives = 179/223 (80.27%), Query Frame = 1
Query:  115 DEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVPIDTGATNSTP---PVRRIEDRADEDD 774
            +EAFYTTNRVMTCSFHK+GEYFPGTGD +D+G + G+NY+INFPL DG+ D+ F+SIFRPVIGKIME F P AVVLQCGADSLSGDRLGCFNLSL GHADCV YVKSFN+PTLVLGGGGYT+RNV RCWTYETAVLL  +I+D LP+NDYFEYYGP +RLH+  SNME+LN R YL+ ++++LF+ L  ++  P V +   +  + P   P  + ED    DD
Sbjct:  183 EEAFYTTNRVMTCSFHKFGEYFPGTGDVQDIGAKDGKNYAINFPLHDGMDDDSFRSIFRPVIGKIMEVFAPGAVVLQCGADSLSGDRLGCFNLSLRGHADCVEYVKSFNIPTLVLGGGGYTLRNVPRCWTYETAVLLGVDIKDALPYNDYFEYYGPDYRLHMPVSNMENLNTREYLDRLKVQLFDILGQVEPVPGVQLGHSSMVAPPLLAPPEKDEDEXXADD 405          
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: A0A812ZZM0_9DINO (Histone deacetylase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZZM0_9DINO)

HSP 1 Score: 319 bits (818), Expect = 3.960e-104
Identity = 147/209 (70.33%), Postives = 175/209 (83.73%), Query Frame = 1
Query:  115 DEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVPIDTG--ATNSTP 735
            +EAFYTT+RVMTCSFHKYG+YFPGTGDWRDLG+ KG+N SINFPLR+G+ D+ F+ IF+P+I  IM+ F+P AVVLQCGADSL+GDRLGCFNL+L GHA CV YVKSF LPTLVLGGGGYTMRNVARCWTYET+VLL+  I DELP++DYFEY+GP + LHI PSNME+ N + YLE V  +L  AL+ +  APSV I TG  AT++TP
Sbjct:  180 EEAFYTTDRVMTCSFHKYGDYFPGTGDWRDLGYGKGKNSSINFPLREGMDDDSFRYIFKPIIQGIMQRFRPGAVVLQCGADSLTGDRLGCFNLTLRGHASCVEYVKSFGLPTLVLGGGGYTMRNVARCWTYETSVLLDTPIPDELPYSDYFEYFGPDYNLHIKPSNMENKNSKTYLESVTGRLLAALKELPIAPSVAIQTGSSATDATP 388          
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: A0A1E7FBJ6_9STRA (Histone deacetylase n=4 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FBJ6_9STRA)

HSP 1 Score: 315 bits (806), Expect = 3.890e-103
Identity = 143/205 (69.76%), Postives = 167/205 (81.46%), Query Frame = 1
Query:  115 DEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVPIDTGATNS 729
            +EAFY+TNRVMTCSFHK+GEYFPGTGD  D+GH  G+NYSINFPL DG+ D+ +KSIFRPVIGKIME F P A+VLQCGADSLSGDRLGCFNLS+ GHADCV YV+SF +P LVLGGGGYT+RNV RCWTYETAVL   E++DELPFNDYFEY+GP +RL++  SNME+LN   YLE  + +L E L  ++  PSV I TG   S
Sbjct:  181 EEAFYSTNRVMTCSFHKFGEYFPGTGDVHDVGHADGKNYSINFPLNDGMDDKSYKSIFRPVIGKIMEMFAPGAIVLQCGADSLSGDRLGCFNLSVKGHADCVRYVRSFGIPMLVLGGGGYTLRNVPRCWTYETAVLTGEEVKDELPFNDYFEYFGPDYRLNLPVSNMENLNSPEYLEKTKNQLLEILSDVEPVPSVQIQTGQVES 385          
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: E0VFJ3_PEDHC (Histone deacetylase RPD3, putative n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VFJ3_PEDHC)

HSP 1 Score: 310 bits (795), Expect = 1.760e-102
Identity = 143/264 (54.17%), Postives = 186/264 (70.45%), Query Frame = 1
Query:    1 PPQPHRVRMAHNLVVNYGLYKDMQVFVSGSSLCGGLV----------------------------FDEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVPI 708
            P +PHR+RM HNL++NYGLY+ M+++    +    +                              +EAFYTT+RVMT SFHKYGEYFPGTGD RD+G  KG+ Y++N PLRDG+ DE ++SIF P+I K+ME FQP AVVLQCGADSL+GDRLGCFNL++ GH  CV +VK + +P L++GGGGYT+RNV+RCWTYET+V L  EI +ELP+NDYFEY+GP F+LHI+PSNM + N   YLE ++ +LFE LR +  AP V +
Sbjct:   18 PMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATQEEMTKFHSDDYIRFLRSIRPDNMSEYNKQMQRLEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKKYGMPFLMVGGGGYTIRNVSRCWTYETSVALGTEIANELPYNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQV 281          
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: A0A2D4CE33_PYTIN (Histone deacetylase n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CE33_PYTIN)

HSP 1 Score: 312 bits (799), Expect = 9.590e-102
Identity = 138/197 (70.05%), Postives = 167/197 (84.77%), Query Frame = 1
Query:  115 DEAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQIKLFEALRSIDAAPSVP 705
            +EAFYTTNRVMTCSFHKYGEYFPGTGD +D+G+  G+NY++NFP+RDG+ DE F ++FR VI KIMEHF P AVVLQCG DSLSGDRLGCFNLS+ GHADCVAYVKSFN+PTLVLGGGGYT+RNVARCW YET+VL   E+ D +P+NDYFEYYGP++RLH+  SNME+LN   YL +++  L+E L+ I+  P+VP
Sbjct:  188 EEAFYTTNRVMTCSFHKYGEYFPGTGDIKDIGYGDGKNYAVNFPMRDGMDDESFTTVFRGVISKIMEHFAPGAVVLQCGTDSLSGDRLGCFNLSVKGHADCVAYVKSFNVPTLVLGGGGYTLRNVARCWCYETSVLTGIEVPDAMPYNDYFEYYGPEYRLHMPVSNMENLNTPTYLNEMKRMLYEQLQQIEPIPNVP 384          
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Match: A0A8C1AKD3_CYPCA (Histone deacetylase 1 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1AKD3_CYPCA)

HSP 1 Score: 305 bits (782), Expect = 1.040e-101
Identity = 137/228 (60.09%), Postives = 179/228 (78.51%), Query Frame = 1
Query:    1 PPQPHRVRMAHNLVVNYGLYKDMQVF----VSGSSLCGGLVFD------EAFYTTNRVMTCSFHKYGEYFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQPQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGYTMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDLNDRAYLEDVQ 654
            P +PHR+RM HNL++NYGLY+ M+++     +G  +      D      EAFYTT+RVMT  +HKYGEYFPGTGD  ++  ++G+ Y++N+PLRDGI DE +++IF+P++ K+ME +QP AVVLQCGADSLSGDRLGCFNL++ GHA CV Y+KSFNLP L+LGGGGYT+RNVARCWTYETAV L+  I +ELP+NDYFEY+GP F+LHI+PSNM + N   YLE ++
Sbjct:   30 PMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANGEEMTKYHSDDYIKFLREAFYTTDRVMTVPYHKYGEYFPGTGDLLEISVQEGKYYAVNYPLRDGIDDESYEAIFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLGGGGYTIRNVARCWTYETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYLEKIK 257          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1082.1101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKQ3_ECTSI4.020e-10868.35Histone deacetylase n=1 Tax=Ectocarpus siliculosus... [more]
A0A8C1ELM6_CYPCA4.210e-10855.75Histone deacetylase 1 n=3 Tax=Cyprinus carpio TaxI... [more]
A0A7S1GDT3_9STRA4.020e-10765.63Histone deacetylase n=2 Tax=Bicosoecida sp. CB-201... [more]
A0A5A8DN09_CAFRO3.590e-10566.22Histone deacetylase n=4 Tax=Sar TaxID=2698737 RepI... [more]
A0A7S2H8U2_9STRA2.670e-10466.82Histone deacetylase n=1 Tax=Dictyocha speculum Tax... [more]
A0A812ZZM0_9DINO3.960e-10470.33Histone deacetylase n=1 Tax=Symbiodinium sp. KB8 T... [more]
A0A1E7FBJ6_9STRA3.890e-10369.76Histone deacetylase n=4 Tax=Bacillariaceae TaxID=3... [more]
E0VFJ3_PEDHC1.760e-10254.17Histone deacetylase RPD3, putative n=1 Tax=Pedicul... [more]
A0A2D4CE33_PYTIN9.590e-10270.05Histone deacetylase n=2 Tax=Pythium TaxID=4797 Rep... [more]
A0A8C1AKD3_CYPCA1.040e-10160.09Histone deacetylase 1 n=1 Tax=Cyprinus carpio TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1082contigS-firma_F_contig1082:19236..20729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FKQ3
PFAMsHist_deacetyl
Max annot lvl2759|Eukaryota
KEGG koko:K06067
KEGG Pathwayko04110,ko04213,ko04330,ko04919,ko05016,ko05034,ko05165,ko05169,ko05200,ko05202,ko05203,ko05220,map04110,map04213,map04330,map04919,map05016,map05034,map05165,map05169,map05200,map05202,map05203,map05220
Evalue4.85e-109
EggNOG OGsCOG0123@1|root,KOG1342@2759|Eukaryota
EC3.5.1.98
DescriptionNAD-dependent histone deacetylase activity (H3-K14 specific)
COG categoryBQ
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size786
Cds size762
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1082.1101.1prot_S-firma_F_contig1082.1101.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1082 19236..20705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.225257-CDS-S-firma_F_contig1082:19235..194811622815625.225257-CDS-S-firma_F_contig1082:19235..19481Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1082 19236..19481 -
1696949462.1349514-CDS-S-firma_F_contig1082:19235..194811696949462.1349514-CDS-S-firma_F_contig1082:19235..19481Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1082 19236..19481 -
1622815625.2424822-CDS-S-firma_F_contig1082:19542..197881622815625.2424822-CDS-S-firma_F_contig1082:19542..19788Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1082 19543..19788 -
1696949462.150506-CDS-S-firma_F_contig1082:19542..197881696949462.150506-CDS-S-firma_F_contig1082:19542..19788Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1082 19543..19788 -
1622815625.2568524-CDS-S-firma_F_contig1082:19844..200211622815625.2568524-CDS-S-firma_F_contig1082:19844..20021Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1082 19845..20021 -
1696949462.1642716-CDS-S-firma_F_contig1082:19844..200211696949462.1642716-CDS-S-firma_F_contig1082:19844..20021Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1082 19845..20021 -
1622815625.269875-CDS-S-firma_F_contig1082:20612..207051622815625.269875-CDS-S-firma_F_contig1082:20612..20705Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1082 20613..20705 -
1696949462.1818585-CDS-S-firma_F_contig1082:20612..207051696949462.1818585-CDS-S-firma_F_contig1082:20612..20705Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1082 20613..20705 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.2827585-UTR-S-firma_F_contig1082:20705..207291622815625.2827585-UTR-S-firma_F_contig1082:20705..20729Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1082 20706..20729 -
1696949462.1931486-UTR-S-firma_F_contig1082:20705..207291696949462.1931486-UTR-S-firma_F_contig1082:20705..20729Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1082 20706..20729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1082.1101.1

>prot_S-firma_F_contig1082.1101.1 ID=prot_S-firma_F_contig1082.1101.1|Name=mRNA_S-firma_F_contig1082.1101.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=254bp
MAHNLVVNYGLYKDMQVFVSGSSLCGGLVFDEAFYTTNRVMTCSFHKYGE
YFPGTGDWRDLGHEKGRNYSINFPLRDGIGDERFKSIFRPVIGKIMEHFQ
PQAVVLQCGADSLSGDRLGCFNLSLHGHADCVAYVKSFNLPTLVLGGGGY
TMRNVARCWTYETAVLLNREIQDELPFNDYFEYYGPQFRLHITPSNMEDL
NDRAYLEDVQIKLFEALRSIDAAPSVPIDTGATNSTPPVRRIEDRADEDD
PDVR
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mRNA from alignment at S-firma_F_contig1082:19236..20729-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1082.1101.1 ID=mRNA_S-firma_F_contig1082.1101.1|Name=mRNA_S-firma_F_contig1082.1101.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1494bp|location=Sequence derived from alignment at S-firma_F_contig1082:19236..20729- (Sphaerotrichia firma ET2_F female)
CCCCCACAGCCGCACCGTGTCCGCATGGCCCACAACCTTGTCGTGAACTA CGGCCTGTACAAAGACATGCAGGTGTTTGTAAGTGGCAGCAGCTTGTGTG GGGGGCTTGTTTTCGACGTAGTGTCACCTGTACTATACACAGCGCCCGGC GTTGGTGGACCACAGCGAAATGACCCGGTTCCACTCCGACGACTACATCA ACTTTTTGCGCATGGTCACGCCGGACAACATGAGCGACCACCTCCGCCTT TTGCAGCGCTGTGCGTTGTGTGTGTTTACCCATTTTCCACCCTTGCTCCA GGTCAACCCCCCCCCCTCTGCAGTCAACGTTGGTGAAGACTGCCCCGTTT TTGACGGCATGTTTGAGTTTTCCCAAATCTCTACCAGCGGCTCCATGGGT GCGCCCTCCCTTCCTCCCTTTCACAGCTCATTTCACTCACTGTGGCTTCG GCTACGTCCAGGTGGTGCTGCCCGCCTCAACGAAGGCCTTGCCGATGTAG TGATCAACTGGGCCGGCGGCCTCCACCACGCCAAGCGGTCAGAGGCCTCC GGGTTCTGCTACGTGAACGACTGCGTCCTTGCCATTCTGGAGCTGCTCAA GTGCGTGCAGCACGTTTGCCCCCGCCGTCGCGGCTCACCCCCCAAACCAG GGTGCACCAACGCGTGCTGTACATTGACATTGACATCCACCACGGTGACG GCGTGGAGGAAGCGTTTTACACCACCAACCGTGTCATGACGTGCAGCTTC CACAAGTACGGGGAGTATTTTCCGGGCACCGGCGACTGGCGCGACTTGGG CCATGAGAAGGGCCGCAACTACTCCATTAACTTCCCCCTGCGAGACGGCA TTGGCGACGAGCGCTTCAAGTCCATTTTCCGCCCTGTGAGCCCCCCCCCC CCCCGCCCTGCTCCCCACCTACTGACGCCCTTGCCCACCAGGTGATTGGT AAAATCATGGAGCACTTCCAGCCGCAGGCTGTGGTGTTGCAGTGTGGTGC TGACAGCCTGTCCGGCGACCGCCTGGGCTGCTTCAATCTGTCCCTGCACG GCCATGCGGACTGCGTCGCGTACGTCAAGAGCTTCAACCTGCCGACGCTT GTGCTGGGCGGTGGTGGGTACACCATGCGCAACGTCGCTCGGTGCTGGAC GTACGAGACGGCCGTGCTGTTGAACCGTGAAATCCAGGTGGGCTCTGTCG TTGCTTTGTGTGCTCCCGTGGTGCTGACTTTGCATCCTACGCGCCCAGGA CGAGCTGCCCTTCAACGATTACTTTGAGTACTACGGCCCCCAGTTCCGCC TGCACATCACCCCGAGCAACATGGAGGACTTGAACGACCGGGCGTACCTG GAAGACGTCCAGATTAAGCTGTTTGAAGCCCTACGGTCCATTGACGCCGC CCCCAGTGTCCCCATTGACACTGGTGCCACAAACTCCACCCCCCCCGTGC GTCGCATTGAAGACCGGGCGGATGAGGACGACCCAGACGTCCGG
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Coding sequence (CDS) from alignment at S-firma_F_contig1082:19236..20729-

>mRNA_S-firma_F_contig1082.1101.1 ID=mRNA_S-firma_F_contig1082.1101.1|Name=mRNA_S-firma_F_contig1082.1101.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1524bp|location=Sequence derived from alignment at S-firma_F_contig1082:19236..20729- (Sphaerotrichia firma ET2_F female)
ATGGCCCACAACCTTGTCGTGAACTACGGCCTGTACAAAGACATGCAGGT
GTTTGTAAGTGGCAGCAGCTTGTGTGGGGGGCTTGTTTTCGACATGGCCC
ACAACCTTGTCGTGAACTACGGCCTGTACAAAGACATGCAGGTGTTTGTA
AGTGGCAGCAGCTTGTGTGGGGGGCTTGTTTTCGACGAAGCGTTTTACAC
CACCAACCGTGTCATGACGTGCAGCTTCCACAAGTACGGGGAGTATTTTC
CGGGCACCGGCGACTGGCGCGACTTGGGCCATGAGAAGGGCCGCAACTAC
TCCATTAACTTCCCCCTGCGAGACGGCATTGGCGACGAGCGCTTCAAGTC
CATTTTCCGCCCTGAAGCGTTTTACACCACCAACCGTGTCATGACGTGCA
GCTTCCACAAGTACGGGGAGTATTTTCCGGGCACCGGCGACTGGCGCGAC
TTGGGCCATGAGAAGGGCCGCAACTACTCCATTAACTTCCCCCTGCGAGA
CGGCATTGGCGACGAGCGCTTCAAGTCCATTTTCCGCCCTGTGATTGGTA
AAATCATGGAGCACTTCCAGCCGCAGGCTGTGGTGTTGCAGTGTGGTGCT
GACAGCCTGTCCGGCGACCGCCTGGGCTGCTTCAATCTGTCCCTGCACGG
CCATGCGGACTGCGTCGCGTACGTCAAGAGCTTCAACCTGCCGACGCTTG
TGCTGGGCGGTGGTGGGTACACCATGCGCAACGTCGCTCGGTGCTGGACG
TACGAGACGGCCGTGCTGTTGAACCGTGAAATCCAGGTGATTGGTAAAAT
CATGGAGCACTTCCAGCCGCAGGCTGTGGTGTTGCAGTGTGGTGCTGACA
GCCTGTCCGGCGACCGCCTGGGCTGCTTCAATCTGTCCCTGCACGGCCAT
GCGGACTGCGTCGCGTACGTCAAGAGCTTCAACCTGCCGACGCTTGTGCT
GGGCGGTGGTGGGTACACCATGCGCAACGTCGCTCGGTGCTGGACGTACG
AGACGGCCGTGCTGTTGAACCGTGAAATCCAGGACGAGCTGCCCTTCAAC
GATTACTTTGAGTACTACGGCCCCCAGTTCCGCCTGCACATCACCCCGAG
CAACATGGAGGACTTGAACGACCGGGCGTACCTGGAAGACGTCCAGATTA
AGCTGTTTGAAGCCCTACGGTCCATTGACGCCGCCCCCAGTGTCCCCATT
GACACTGGTGCCACAAACTCCACCCCCCCCGTGCGTCGCATTGAAGACCG
GGCGGATGAGGACGACCCAGACGTCCGGGACGAGCTGCCCTTCAACGATT
ACTTTGAGTACTACGGCCCCCAGTTCCGCCTGCACATCACCCCGAGCAAC
ATGGAGGACTTGAACGACCGGGCGTACCTGGAAGACGTCCAGATTAAGCT
GTTTGAAGCCCTACGGTCCATTGACGCCGCCCCCAGTGTCCCCATTGACA
CTGGTGCCACAAACTCCACCCCCCCCGTGCGTCGCATTGAAGACCGGGCG
GATGAGGACGACCCAGACGTCCGG
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