mRNA_S-firma_F_contig1082.1098.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1082.1098.1
Unique NamemRNA_S-firma_F_contig1082.1098.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1082.1098.1 vs. uniprot
Match: A0A0L0V7W2_9BASI (Transcriptional activator HAP2 n=2 Tax=Puccinia striiformis TaxID=27350 RepID=A0A0L0V7W2_9BASI)

HSP 1 Score: 77.4 bits (189), Expect = 3.740e-16
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:   10 SPERTVYVNPKQYDRILKRRETRARLGLS--TTKPKKQYLHTSRHAHAVNRPRGKSGRFLTKAELAKLAE 213
            S ER V+VNPKQYDRI+KRR  RARL      ++ ++ YLH SRH HAV RPRG  GRFLTK ELA  A+
Sbjct:   99 STERPVFVNPKQYDRIMKRRLARARLEEMGRLSRERQPYLHESRHKHAVRRPRGPRGRFLTKEELADRAD 168
[Close]
BLAST of mRNA_S-firma_F_contig1082.1098.1 vs. uniprot
Match: A0A1Y2HZA4_9FUNG (Transcriptional activator HAP2 (Fragment) n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HZA4_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 5.900e-16
Identity = 40/63 (63.49%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:   16 ERTVYVNPKQYDRILKRRETRARLG--LSTTKPKKQYLHTSRHAHAVNRPRGKSGRFLTKAEL 198
            E+ +YVN KQY RILKRR  RARL   L   + +K YLH SRH HA+ RPRG  GRFLTKAEL
Sbjct:    5 EQPMYVNAKQYHRILKRRAARARLEAELKGARSRKPYLHESRHKHAMRRPRGPGGRFLTKAEL 67
[Close]
BLAST of mRNA_S-firma_F_contig1082.1098.1 vs. uniprot
Match: A0A1Y1W9V9_9FUNG (Transcriptional activator HAP2 (Fragment) n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W9V9_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 1.280e-15
Identity = 39/66 (59.09%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:   16 ERTVYVNPKQYDRILKRRETRARLGLS--TTKPKKQYLHTSRHAHAVNRPRGKSGRFLTKAELAKL 207
            E  +YVN KQY RI+KRRE RARL         +K YLH SRH HA+ RPRG  GRFLT AE+A+L
Sbjct:    2 EDPIYVNAKQYHRIMKRREARARLAAEHKLNAKRKPYLHESRHRHAMRRPRGPGGRFLTAAEIAEL 67
[Close]
BLAST of mRNA_S-firma_F_contig1082.1098.1 vs. uniprot
Match: A0A2G5B3T0_COERN (Transcriptional activator HAP2 (Fragment) n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5B3T0_COERN)

HSP 1 Score: 72.4 bits (176), Expect = 2.520e-15
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   16 ERTVYVNPKQYDRILKRRETRARLGLS--TTKPKKQYLHTSRHAHAVNRPRGKSGRFLTKAELA 201
            E  VYVN KQY RI KRRETRAR+      +  +K YLH SRH HA+ RPRG  GRFLT AE+A
Sbjct:    6 EGPVYVNSKQYHRITKRRETRARMAAEHKLSMKRKPYLHESRHRHAMRRPRGPGGRFLTAAEIA 69
[Close]
BLAST of mRNA_S-firma_F_contig1082.1098.1 vs. uniprot
Match: A0A7R9U4I3_9STRA (Nuclear transcription factor Y subunit n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4I3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.700e-15
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:    7 LSPERTVYVNPKQYDRILKRRETRARLGLSTTKP-KKQYLHTSRHAHAVNRPRGKSGRFLTKAELAKL 207
            +S E+  YVN KQY RILKRR+ RA+L      P +K YLH SRH HA  RPRG SGRFLTKAEL +L
Sbjct:  152 MSDEQPTYVNAKQYRRILKRRQARAKLESKWKAPSRKTYLHKSRHEHACRRPRGPSGRFLTKAELEEL 219
[Close]
BLAST of mRNA_S-firma_F_contig1082.1098.1 vs. uniprot
Match: A0A507CVR3_9FUNG (Transcriptional activator HAP2 n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CVR3_9FUNG)

HSP 1 Score: 75.1 bits (183), Expect = 2.710e-15
Identity = 41/63 (65.08%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:   25 VYVNPKQYDRILKRRETRARLG--LSTTKPKKQYLHTSRHAHAVNRPRGKSGRFLTKAELAKL 207
            +YVN KQY RILKRRE RARL   L  ++ KK YLH SRH HAV RPRG  GRFLT AE+ +L
Sbjct:   63 LYVNAKQYKRILKRREARARLEAELRHSRAKKPYLHESRHKHAVRRPRGPGGRFLTAAEVERL 125
[Close]
BLAST of mRNA_S-firma_F_contig1082.1098.1 vs. uniprot
Match: A0A4P9Z4L8_9FUNG (Transcriptional activator HAP2 (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z4L8_9FUNG)

HSP 1 Score: 72.8 bits (177), Expect = 2.910e-15
Identity = 40/66 (60.61%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:   16 ERTVYVNPKQYDRILKRRETRARLGLST--TKPKKQYLHTSRHAHAVNRPRGKSGRFLTKAELAKL 207
            E  +YVN KQY RILKRR  RARL       K +K YLH SRH HA+ RPRG  GRFLT AE+A+L
Sbjct:    1 EEPLYVNAKQYHRILKRRAVRARLEEQNRLAKQRKPYLHESRHRHAMRRPRGPGGRFLTAAEIAEL 66
[Close]
BLAST of mRNA_S-firma_F_contig1082.1098.1 vs. uniprot
Match: A0A4P9XSK2_9FUNG (Transcriptional activator HAP2 (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XSK2_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 4.960e-15
Identity = 39/63 (61.90%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:   25 VYVNPKQYDRILKRRETRARLGLST--TKPKKQYLHTSRHAHAVNRPRGKSGRFLTKAELAKL 207
            +YVN KQY RILKRR  RARL       K +K YLH SRH HA+ RPRG  GRFLT AE+A+L
Sbjct:    5 LYVNAKQYHRILKRRAVRARLEEQNRLAKQRKPYLHESRHRHAMRRPRGPGGRFLTAAEIAEL 67
[Close]
BLAST of mRNA_S-firma_F_contig1082.1098.1 vs. uniprot
Match: A0A507CKC2_9FUNG (Transcriptional activator HAP2 n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CKC2_9FUNG)

HSP 1 Score: 75.1 bits (183), Expect = 5.160e-15
Identity = 41/66 (62.12%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:   16 ERTVYVNPKQYDRILKRRETRARLG--LSTTKPKKQYLHTSRHAHAVNRPRGKSGRFLTKAELAKL 207
            E  +YVN KQY RILKRRE RA+L   +   K KK YLH SRH HAV RPRG  GRFLT +E+A L
Sbjct:   86 EEPLYVNAKQYHRILKRREARAKLEAEIKHAKAKKPYLHESRHKHAVRRPRGAGGRFLTASEVAAL 151
[Close]
BLAST of mRNA_S-firma_F_contig1082.1098.1 vs. uniprot
Match: I2JUD2_DEKBR (Transcriptional activator HAP2 n=4 Tax=Dekkera bruxellensis TaxID=5007 RepID=I2JUD2_DEKBR)

HSP 1 Score: 75.9 bits (185), Expect = 5.580e-15
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    4 PLSPERTVYVNPKQYDRILKRRETRARL--GLSTTKPKKQYLHTSRHAHAVNRPRGKSGRFLTKAELAKL 207
            P++ E+  YVN KQY RILKRR  RA+L   L   K +K YLH SRH HA+ RPRG+ GRFLT AE+A+L
Sbjct:  135 PVAQEQPYYVNAKQYHRILKRRIARAKLEESLKIQKRRKPYLHESRHKHAMRRPRGQGGRFLTAAEIAEL 204
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1082.1098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0V7W2_9BASI3.740e-1661.43Transcriptional activator HAP2 n=2 Tax=Puccinia st... [more]
A0A1Y2HZA4_9FUNG5.900e-1663.49Transcriptional activator HAP2 (Fragment) n=1 Tax=... [more]
A0A1Y1W9V9_9FUNG1.280e-1559.09Transcriptional activator HAP2 (Fragment) n=1 Tax=... [more]
A0A2G5B3T0_COERN2.520e-1560.94Transcriptional activator HAP2 (Fragment) n=1 Tax=... [more]
A0A7R9U4I3_9STRA2.700e-1561.76Nuclear transcription factor Y subunit n=2 Tax=Pin... [more]
A0A507CVR3_9FUNG2.710e-1565.08Transcriptional activator HAP2 n=1 Tax=Synchytrium... [more]
A0A4P9Z4L8_9FUNG2.910e-1560.61Transcriptional activator HAP2 (Fragment) n=1 Tax=... [more]
A0A4P9XSK2_9FUNG4.960e-1561.90Transcriptional activator HAP2 (Fragment) n=1 Tax=... [more]
A0A507CKC2_9FUNG5.160e-1562.12Transcriptional activator HAP2 n=1 Tax=Synchytrium... [more]
I2JUD2_DEKBR5.580e-1558.57Transcriptional activator HAP2 n=4 Tax=Dekkera bru... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1082contigS-firma_F_contig1082:2570..2852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog5297.GMQ_19942T0
Preferred nameHAP2
PFAMsCBFB_NFYA
Max annot lvl4751|Fungi
KEGG koko:K08064
KEGG Pathwayko04612,ko05152,map04612,map05152
GOsGO:0000429,GO:0000436,GO:0000976,GO:0000977,GO:0000978,GO:0000979,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0006109,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010106,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016602,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0030003,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0032774,GO:0032991,GO:0033217,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042592,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043457,GO:0043467,GO:0043565,GO:0043618,GO:0043620,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045944,GO:0045990,GO:0045991,GO:0046483,GO:0046916,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0065007,GO:0065008,GO:0070887,GO:0071496,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098771,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
Evalue2.37e-15
EggNOG OGsCOG5224@1|root,KOG1561@2759|Eukaryota,38DV3@33154|Opisthokonta,3P578@4751|Fungi,3V2F9@5204|Basidiomycota,2YG2W@29000|Pucciniomycotina
DescriptionCCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
COG categoryK
BRITEko00000,ko00001,ko03000
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.0352147-CDS-S-firma_F_contig1082:2569..27371622815625.0352147-CDS-S-firma_F_contig1082:2569..2737Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1082 2570..2737 -
1696949462.0313935-CDS-S-firma_F_contig1082:2569..27371696949462.0313935-CDS-S-firma_F_contig1082:2569..2737Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1082 2570..2737 -
1622815625.0475655-CDS-S-firma_F_contig1082:2807..28521622815625.0475655-CDS-S-firma_F_contig1082:2807..2852Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1082 2808..2852 -
1696949462.0432687-CDS-S-firma_F_contig1082:2807..28521696949462.0432687-CDS-S-firma_F_contig1082:2807..2852Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1082 2808..2852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1082.1098.1prot_S-firma_F_contig1082.1098.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1082 2570..2852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1082.1098.1

>prot_S-firma_F_contig1082.1098.1 ID=prot_S-firma_F_contig1082.1098.1|Name=mRNA_S-firma_F_contig1082.1098.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=71bp
MPLSPERTVYVNPKQYDRILKRRETRARLGLSTTKPKKQYLHTSRHAHAV
NRPRGKSGRFLTKAELAKLAE
back to top

mRNA from alignment at S-firma_F_contig1082:2570..2852-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1082.1098.1 ID=mRNA_S-firma_F_contig1082.1098.1|Name=mRNA_S-firma_F_contig1082.1098.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=283bp|location=Sequence derived from alignment at S-firma_F_contig1082:2570..2852- (Sphaerotrichia firma ET2_F female)
ATGCCGCTGTCTCCTGAGCGCACCGTGTACGTGAACCCGAAACAGGTACG
CTAATGGCCAAGGTCTCTCGGTTGCACTCCCTTGACCCCCCCCCCCCCCC
CCCCCCTTCCCAAAGTATGACCGCATTCTTAAACGGCGCGAAACAAGAGC
CCGCCTTGGGCTGTCCACCACCAAGCCCAAGAAGCAGTACCTCCACACGT
CCCGCCACGCCCACGCCGTGAACCGACCCCGCGGCAAGTCCGGCCGCTTC
CTCACCAAGGCAGAGCTGGCCAAGCTTGCAGAG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1082:2570..2852-

>mRNA_S-firma_F_contig1082.1098.1 ID=mRNA_S-firma_F_contig1082.1098.1|Name=mRNA_S-firma_F_contig1082.1098.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=426bp|location=Sequence derived from alignment at S-firma_F_contig1082:2570..2852- (Sphaerotrichia firma ET2_F female)
ATGCCGCTGTCTCCTGAGCGCACCGTGTACGTGAACCCGAAACAGATGCC
GCTGTCTCCTGAGCGCACCGTGTACGTGAACCCGAAACAGTATGACCGCA
TTCTTAAACGGCGCGAAACAAGAGCCCGCCTTGGGCTGTCCACCACCAAG
CCCAAGAAGCAGTACCTCCACACGTCCCGCCACGCCCACGCCGTGAACCG
ACCCCGCGGCAAGTCCGGCCGCTTCCTCACCAAGGCAGAGCTGGCCAAGC
TTGCAGAGTATGACCGCATTCTTAAACGGCGCGAAACAAGAGCCCGCCTT
GGGCTGTCCACCACCAAGCCCAAGAAGCAGTACCTCCACACGTCCCGCCA
CGCCCACGCCGTGAACCGACCCCGCGGCAAGTCCGGCCGCTTCCTCACCA
AGGCAGAGCTGGCCAAGCTTGCAGAG
back to top