mRNA_S-firma_F_contig10818.1096.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10818.1096.1
Unique NamemRNA_S-firma_F_contig10818.1096.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10818.1096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10818contigS-firma_F_contig10818:2894..4230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size291
Cds size291
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10818.1096.1prot_S-firma_F_contig10818.1096.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10818 2894..4230 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.8342462-CDS-S-firma_F_contig10818:2893..29761622815624.8342462-CDS-S-firma_F_contig10818:2893..2976Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10818 2894..2976 -
1696949461.983343-CDS-S-firma_F_contig10818:2893..29761696949461.983343-CDS-S-firma_F_contig10818:2893..2976Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10818 2894..2976 -
1622815624.8527617-CDS-S-firma_F_contig10818:3278..33441622815624.8527617-CDS-S-firma_F_contig10818:3278..3344Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10818 3279..3344 -
1696949461.9967463-CDS-S-firma_F_contig10818:3278..33441696949461.9967463-CDS-S-firma_F_contig10818:3278..3344Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10818 3279..3344 -
1622815624.8656664-CDS-S-firma_F_contig10818:3738..38281622815624.8656664-CDS-S-firma_F_contig10818:3738..3828Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10818 3739..3828 -
1696949462.0055237-CDS-S-firma_F_contig10818:3738..38281696949462.0055237-CDS-S-firma_F_contig10818:3738..3828Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10818 3739..3828 -
1622815624.8806806-CDS-S-firma_F_contig10818:4178..42301622815624.8806806-CDS-S-firma_F_contig10818:4178..4230Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10818 4179..4230 -
1696949462.013854-CDS-S-firma_F_contig10818:4178..42301696949462.013854-CDS-S-firma_F_contig10818:4178..4230Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10818 4179..4230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10818.1096.1

>prot_S-firma_F_contig10818.1096.1 ID=prot_S-firma_F_contig10818.1096.1|Name=mRNA_S-firma_F_contig10818.1096.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=97bp
KGAGDTSGGLAGSAGKQGGARAGVNLKGQQNPFNPYGPPASAKKPSQGTW
VSPRSRKPTIHFSLTQREAGTGHSKKLGQATSEEKTEIAASIQTAFR
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mRNA from alignment at S-firma_F_contig10818:2894..4230-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10818.1096.1 ID=mRNA_S-firma_F_contig10818.1096.1|Name=mRNA_S-firma_F_contig10818.1096.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1337bp|location=Sequence derived from alignment at S-firma_F_contig10818:2894..4230- (Sphaerotrichia firma ET2_F female)
AAGGGCGCGGGTGACACCTCGGGCGGACTTGCTGGATCCGCCGGGAAGCA
AGGTGAGGTACAACACCCCTTCCGTTTTCGAAAGATCACACGGGGAATCT
CCTCAAGAAATTTTGATGCTCCGGGTGTTTTGAGTCTTGACGCCTCTGTC
CGTCATGTTTCCCTCGCGCGGCGCTAAGTTGGGGGGTGTAGTCGTTTGCT
GTGGTACGTAGCTAGGCCTAGGACGCGTTTCCCTAGCGGGTGATATTCAG
CTCTATCGGCGTTGGCATTGTGCTTTCCTCGCGTTGTGCCCTGTTGCCAT
CTTGGCGAAAGAGAAAAAAAAAAAAAAATCACCGTCCAAGGGTCGAGCTT
CGCTAGGCATTCGTTGATAACACGCAAAATTTTGATCGTGCGGTCTTCGT
AGGCGGCGCAAGGGCCGGAGTGAACTTGAAAGGTCAGCAGAATCCCTTCA
ACCCCTACGGTCCCCCGGCGTCTGCAAAGAAGCCTTCTCAAGGTAAGTTG
GCGCCTACACGCCTGTGACGAAAGGGTCCTGTGCGTCGTTGGAAAACGGC
CAATCTGCGGTAGAGACTTTGAATCTGTCCGATGTTGAATCTGTGTCCGG
TGAGAACTTTCTGTCCTCGGCGAGAGGTTGCGCCTGTGGGCCCAAACCTC
CTCCTCTTTATGTACTTGCGCGGTAACACGCAACCGTGCCGACTTTCGTG
ACGCGTCGCGCACTTGATTGTCGCGTCGCCTTTTTCGGGAGCACCGATCC
GCGGCGTACAAAATTGATTTCGCTTTTGAAGGTGCAAAGATGGAGTCACC
AACCCACATACAGCAATCAGGCGTGGTGGCTTTCGTACGCTAACGTTTCC
GACCACCCCCCCACCCCCCGCCAACGTCGTGCTTAGGAACATGGGTTTCG
CCTCGGAGCCGTAAACCGACGATCCATTTCAGCCTAACCCAGCGGGAAGC
CGGTAAGTTCTGCTCCCGATGCGTTCGTGGTTTGAGAAGTCTGGTCTGGC
CGTTGACATTTCCTGGGTTTTTTTCAAGTCTTGCCCTTTGACACGGACCT
TTTTGAAAGTACGCATCCAGTATGGCTTCACGTTTGACCTGGAAGCCCAT
ACCCGTGGCGTTGTCGGGTGTCATCCCGTGGCGGGCCCGCGCTGTTTGTT
GTACTTGTGGATTGTGTGTGGTGCGATGCCACCTCGAATGTTGAGTGTTT
GTTGATCTTTGCCCAACCGCAATCCCACCTTTCGCCGCCTTGCCCGTAAA
TTAGGCACAGGCCACTCGAAGAAACTGGGTCAGGCGACGTCGGAAGAGAA
GACGGAGATCGCCGCGTCTATCCAGACTGCCTTCAGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10818:2894..4230-

>mRNA_S-firma_F_contig10818.1096.1 ID=mRNA_S-firma_F_contig10818.1096.1|Name=mRNA_S-firma_F_contig10818.1096.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=582bp|location=Sequence derived from alignment at S-firma_F_contig10818:2894..4230- (Sphaerotrichia firma ET2_F female)
AAGGGCGCGGGTGACACCTCGGGCGGACTTGCTGGATCCGCCGGGAAGCA
AGAAGGGCGCGGGTGACACCTCGGGCGGACTTGCTGGATCCGCCGGGAAG
CAAGGCGGCGCAAGGGCCGGAGTGAACTTGAAAGGTCAGCAGAATCCCTT
CAACCCCTACGGTCCCCCGGCGTCTGCAAAGAAGCCTTCTCAAGGCGGCG
CAAGGGCCGGAGTGAACTTGAAAGGTCAGCAGAATCCCTTCAACCCCTAC
GGTCCCCCGGCGTCTGCAAAGAAGCCTTCTCAAGGAACATGGGTTTCGCC
TCGGAGCCGTAAACCGACGATCCATTTCAGCCTAACCCAGCGGGAAGCCG
GAACATGGGTTTCGCCTCGGAGCCGTAAACCGACGATCCATTTCAGCCTA
ACCCAGCGGGAAGCCGGCACAGGCCACTCGAAGAAACTGGGTCAGGCGAC
GTCGGAAGAGAAGACGGAGATCGCCGCGTCTATCCAGACTGCCTTCAGAG
CACAGGCCACTCGAAGAAACTGGGTCAGGCGACGTCGGAAGAGAAGACGG
AGATCGCCGCGTCTATCCAGACTGCCTTCAGA
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