mRNA_S-firma_F_contig10817.1095.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10817.1095.1
Unique NamemRNA_S-firma_F_contig10817.1095.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10817.1095.1 vs. uniprot
Match: F2UJC5_SALR5 (RbsD or FucU transporter n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UJC5_SALR5)

HSP 1 Score: 157 bits (398), Expect = 8.900e-47
Identity = 82/143 (57.34%), Postives = 102/143 (71.33%), Query Frame = 1
Query:    1 MTILKGVPRILSPQLIHVLARMGHGDRLVLADINFPAASVASTTVDGLIRADGLTIPALLDAILSLMPLDSAVESPCALMQVMPEHVEAGITTPVWAEYQAIADKHEASPVKFHEVERFQFYEEARKCYAVVATGEEALYGNV 429
            MT+LKG+P IL P+L+  LA+MGHGD LVLAD NFPA SV ++T   +IR D L +P LL AIL L+PLD     PCALM +MPEH  AG  TP+W +Y+AI  ++E   V F  VERF FYE A+K + VVATGE+ALY N+
Sbjct:    1 MTVLKGIPSILPPELLLALAKMGHGDELVLADANFPAESVGASTPCSVIRCDALGMPELLSAILKLLPLDET-SCPCALMDLMPEHKAAGWQTPIWEQYRAIVAENEKRTVDFELVERFAFYERAKKAFVVVATGEQALYANL 142          
BLAST of mRNA_S-firma_F_contig10817.1095.1 vs. uniprot
Match: A0A8B7XKT5_ACAPL (fucose mutarotase-like isoform X1 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XKT5_ACAPL)

HSP 1 Score: 157 bits (396), Expect = 1.630e-46
Identity = 80/143 (55.94%), Postives = 107/143 (74.83%), Query Frame = 1
Query:    1 MTILKGVPRILSPQLIHVLARMGHGDRLVLADINFPAASVASTTVDGLIRADGLTIPALLDAILSLMPLDSAVESPCALMQVMPEHVEAGITTPVWAEYQAIADKHEASPVKFHEVERFQFYEEARKCYAVVATGEEALYGNV 429
            M +LKG+PRILSP+L+HVLA+MGHGD +VLAD NFP++S+        IRADG  IP LL+AIL L+PLD+ V SP  +M+++ EH +A + T VW ++QA+ D  E   VK  ++ERF FYE A+K +AVVATGE+ALYGN+
Sbjct:    1 MVVLKGIPRILSPELLHVLAQMGHGDEIVLADANFPSSSICGAGPKE-IRADGHGIPELLEAILQLLPLDAFVPSPAMVMELVDEHKKAKLPTLVWDKFQALLDAAEGKTVKIEQIERFAFYERAKKAFAVVATGEKALYGNL 142          
BLAST of mRNA_S-firma_F_contig10817.1095.1 vs. uniprot
Match: A0A210PPC3_MIZYE (Fucose mutarotase n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PPC3_MIZYE)

HSP 1 Score: 153 bits (387), Expect = 3.360e-45
Identity = 80/141 (56.74%), Postives = 100/141 (70.92%), Query Frame = 1
Query:   10 LKGVPRILSPQLIHVLARMGHGDRLVLADINFPAASVA-STTVDGLIRADGLTIPALLDAILSLMPLDSAVESPCALMQVMPEHVEAGITTPVWAEYQAIADKHEASPVKFHEVERFQFYEEARKCYAVVATGEEALYGNV 429
            LK +P +LSP L+HVLA MGHGD LVLAD NFP ASV  S  ++  +RADG+ IP L+DAIL L+PLD+ V+ P ALM ++P   + G+ TPVW +Y  IA KHE   +    VERF FYE A+K +AVV TGE ALYGN+
Sbjct:    3 LKLIPNVLSPNLLHVLASMGHGDELVLADANFPTASVCKSGPIE--VRADGIDIPTLMDAILQLLPLDTYVDRPIALMDLVPSDKQRGLQTPVWEKYMTIARKHEGKTIDVQLVERFAFYERAKKAFAVVHTGETALYGNI 141          
BLAST of mRNA_S-firma_F_contig10817.1095.1 vs. uniprot
Match: UPI0014581009 (fucose mutarotase-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014581009)

HSP 1 Score: 153 bits (386), Expect = 4.770e-45
Identity = 79/141 (56.03%), Postives = 103/141 (73.05%), Query Frame = 1
Query:   10 LKGVPRILSPQLIHVLARMGHGDRLVLADINFPAASVA-STTVDGLIRADGLTIPALLDAILSLMPLDSAVESPCALMQVMPEHVEAGITTPVWAEYQAIADKHEASPVKFHEVERFQFYEEARKCYAVVATGEEALYGNV 429
            LK +P +LSP L+HVLA MGHGD +VLAD NFP++SV+ S  ++  +RADG+ IP L+DAIL L PLD+ V+ P ALM ++P   + G+ TPVW +Y+AI+ KHE   V    VERF FYE A+K +AVV TGE ALYGN+
Sbjct:    3 LKRIPNVLSPNLLHVLASMGHGDEIVLADANFPSSSVSKSGPIE--VRADGIDIPTLMDAILQLFPLDAYVDRPIALMDLVPSDKQRGLQTPVWEKYKAISYKHEGKQVDVQLVERFAFYERAKKAFAVVHTGETALYGNI 141          
BLAST of mRNA_S-firma_F_contig10817.1095.1 vs. uniprot
Match: UPI0014551623 (fucose mutarotase-like isoform X1 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014551623)

HSP 1 Score: 152 bits (384), Expect = 1.090e-44
Identity = 78/143 (54.55%), Postives = 105/143 (73.43%), Query Frame = 1
Query:    1 MTILKGVPRILSPQLIHVLARMGHGDRLVLADINFPAASVASTTVDGLIRADGLTIPALLDAILSLMPLDSAVESPCALMQVMPEHVEAGITTPVWAEYQAIADKHEASPVKFHEVERFQFYEEARKCYAVVATGEEALYGNV 429
            M +LKG+P ILSP+L++ LA+MGHGD +VLAD NFP++SV +      IRADG  IP LL+AIL L+PLD+ VESP  +M+++ +H E  + TPVW +YQ + D  E   V   ++ERF FYE A+K +AVVATGE+ALYGN+
Sbjct:    1 MVVLKGIPVILSPELLYALAQMGHGDEIVLADANFPSSSVCAAGPRE-IRADGHGIPELLEAILQLLPLDAFVESPAMVMELVEKHKEEKLPTPVWDKYQCLLDASEEQKVSIEKIERFAFYERAKKAFAVVATGEKALYGNL 142          
BLAST of mRNA_S-firma_F_contig10817.1095.1 vs. uniprot
Match: UPI00021A4559 (fucose mutarotase-like isoform X2 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00021A4559)

HSP 1 Score: 152 bits (383), Expect = 1.540e-44
Identity = 79/143 (55.24%), Postives = 103/143 (72.03%), Query Frame = 1
Query:    1 MTILKGVPRILSPQLIHVLARMGHGDRLVLADINFPAASVASTTVDGLIRADGLTIPALLDAILSLMPLDSAVESPCALMQVMPEHVEAGITTPVWAEYQAIADKHEASPVKFHEVERFQFYEEARKCYAVVATGEEALYGNV 429
            M ILKG+PRI++P L+ VLARMGHGD +VLAD NFP+AS+     + LIRADG  IP LL AI SL+PLD+ V  P  LM+++    +AG+ TP+W +Y++I  + E   + F  +ERF FYE A+  +AVVATGEEALYGNV
Sbjct:    1 MVILKGIPRIINPSLLSVLARMGHGDEIVLADANFPSASICRHGPE-LIRADGHAIPPLLKAITSLLPLDTYVPRPAMLMELVHNDKKAGLKTPIWEQYKSILQQAEGKDIGFEMIERFAFYERAKTAFAVVATGEEALYGNV 142          
BLAST of mRNA_S-firma_F_contig10817.1095.1 vs. uniprot
Match: FUCM_HUMAN (Fucose mutarotase n=48 Tax=Simiiformes TaxID=314293 RepID=FUCM_HUMAN)

HSP 1 Score: 151 bits (382), Expect = 2.250e-44
Identity = 81/144 (56.25%), Postives = 108/144 (75.00%), Query Frame = 1
Query:    1 MTILKGVPRILSPQLIHVLARMGHGDRLVLADINFPAASVASTTVDGLIRADGLTIPALLDAILSLMPLDSAVESPCALMQVMPEHVEAGITTPVWAEYQAIADKHEASPVK-FHEVERFQFYEEARKCYAVVATGEEALYGNV 429
            M  LKGVP +LSP+L++ LARMGHGD +VLAD+NFPA+S+        IRADGL IP LL+A+L L+PLD+ VESP A+M+++P   E G+ TPVW EY++I  +  A  V+   ++ERF+FYE A+K +AVVATGE ALYGN+
Sbjct:    1 MVALKGVPALLSPELLYALARMGHGDEIVLADLNFPASSICQCGPME-IRADGLGIPQLLEAVLKLLPLDTYVESPAAVMELVPSDKERGLQTPVWTEYESILRR--AGCVRALAKIERFEFYERAKKAFAVVATGETALYGNL 141          
BLAST of mRNA_S-firma_F_contig10817.1095.1 vs. uniprot
Match: C3Y6F6_BRAFL (Uncharacterized protein n=3 Tax=Branchiostoma TaxID=7737 RepID=C3Y6F6_BRAFL)

HSP 1 Score: 151 bits (381), Expect = 2.910e-44
Identity = 80/143 (55.94%), Postives = 102/143 (71.33%), Query Frame = 1
Query:    1 MTILKGVPRILSPQLIHVLARMGHGDRLVLADINFPAASVASTTVDGLIRADGLTIPALLDAILSLMPLDSAVESPCALMQVMPEHVEAGITTPVWAEYQAIADKHEASPVKFHEVERFQFYEEARKCYAVVATGEEALYGNV 429
            M +LKG+PRILSP+L+ VLARMGHGD +V AD NFP +S+ S+     +RADG  IPALL A+L L+PLD+ VESP A+M ++P   E G+ TPVW  Y+ +  K   S     +VERF FYE A+K +AVVATGE ALYGN+
Sbjct:    1 MVVLKGIPRILSPELLFVLARMGHGDEIVFADANFPTSSICSSGPIE-VRADGHCIPALLKAVLELLPLDTYVESPAAVMDLVPGDKEKGLKTPVWDTYRGLL-KEAGSTTPLEQVERFAFYERAKKAFAVVATGETALYGNI 141          
BLAST of mRNA_S-firma_F_contig10817.1095.1 vs. uniprot
Match: UPI0018A7ADBF (fucose mutarotase-like n=3 Tax=Penaeus TaxID=133894 RepID=UPI0018A7ADBF)

HSP 1 Score: 151 bits (381), Expect = 2.910e-44
Identity = 77/141 (54.61%), Postives = 100/141 (70.92%), Query Frame = 1
Query:   10 LKGVPRILSPQLIHVLARMGHGDRLVLADINFPAASVAS-TTVDGLIRADGLTIPALLDAILSLMPLDSAVESPCALMQVMPEHVEAGITTPVWAEYQAIADKHEASPVKFHEVERFQFYEEARKCYAVVATGEEALYGNV 429
            LKG+P ILSP ++H+LA  GHGD +VLADINFP  ++ + +      RADG+ IPALLDAIL+LMPLD+ VE+P  LM +       G   PVW EY+ I DKHE++PV F +VERF+FYE A+K YA++ TGE A Y N+
Sbjct:    4 LKGIPHILSPDILHLLAVTGHGDEIVLADINFPTHTICNGSDRPKEYRADGVGIPALLDAILTLMPLDAYVENPVQLMDLTDGDKTKGFQVPVWDEYRKICDKHESAPVSFEKVERFEFYERAKKVYAIIHTGETAAYANI 144          
BLAST of mRNA_S-firma_F_contig10817.1095.1 vs. uniprot
Match: UPI0018D5E3BD (fucose mutarotase-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D5E3BD)

HSP 1 Score: 151 bits (381), Expect = 3.100e-44
Identity = 78/143 (54.55%), Postives = 101/143 (70.63%), Query Frame = 1
Query:    1 MTILKGVPRILSPQLIHVLARMGHGDRLVLADINFPAASVASTTVDGLIRADGLTIPALLDAILSLMPLDSAVESPCALMQVMPEHVEAGITTPVWAEYQAIADKHEASPVKFHEVERFQFYEEARKCYAVVATGEEALYGNV 429
            M +LKG+PRILSP+L+  LA+MGHGD +VLAD NFP++ V        IRADG  IP LL+A+L L PLD+ V +P  LM ++PEH +  + TPVW +YQ + D  E   V   ++ERF FYE A+K +AVVATGEEALYGN+
Sbjct:    1 MVVLKGIPRILSPELLLALAQMGHGDEIVLADANFPSSGVCRAGPRE-IRADGHGIPELLEAVLQLFPLDAFVPAPAMLMDLVPEHKKEKLPTPVWDKYQTLLDAAEGKHVNIEKIERFAFYERAKKAFAVVATGEEALYGNL 142          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10817.1095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F2UJC5_SALR58.900e-4757.34RbsD or FucU transporter n=1 Tax=Salpingoeca roset... [more]
A0A8B7XKT5_ACAPL1.630e-4655.94fucose mutarotase-like isoform X1 n=1 Tax=Acanthas... [more]
A0A210PPC3_MIZYE3.360e-4556.74Fucose mutarotase n=1 Tax=Mizuhopecten yessoensis ... [more]
UPI00145810094.770e-4556.03fucose mutarotase-like n=1 Tax=Pecten maximus TaxI... [more]
UPI00145516231.090e-4454.55fucose mutarotase-like isoform X1 n=1 Tax=Asterias... [more]
UPI00021A45591.540e-4455.24fucose mutarotase-like isoform X2 n=1 Tax=Amphimed... [more]
FUCM_HUMAN2.250e-4456.25Fucose mutarotase n=48 Tax=Simiiformes TaxID=31429... [more]
C3Y6F6_BRAFL2.910e-4455.94Uncharacterized protein n=3 Tax=Branchiostoma TaxI... [more]
UPI0018A7ADBF2.910e-4454.61fucose mutarotase-like n=3 Tax=Penaeus TaxID=13389... [more]
UPI0018D5E3BD3.100e-4454.55fucose mutarotase-like n=1 Tax=Patiria miniata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10817contigS-firma_F_contig10817:4368..4854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog946362.XP_004990568.1
Preferred nameFUOM
PFAMsRbsD_FucU
Max annot lvl33154|Opisthokonta
KEGG rclassRC00563
KEGG koko:K02431
KEGG ReactionR10764
GOsGO:0000003,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006004,GO:0007275,GO:0007399,GO:0007610,GO:0007617,GO:0007618,GO:0008150,GO:0008152,GO:0009987,GO:0010721,GO:0016853,GO:0016854,GO:0016857,GO:0019098,GO:0019318,GO:0019953,GO:0022008,GO:0022414,GO:0030154,GO:0030246,GO:0032501,GO:0032502,GO:0032504,GO:0036065,GO:0036094,GO:0042806,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048029,GO:0048519,GO:0048523,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051239,GO:0051241,GO:0051704,GO:0051960,GO:0051961,GO:0060180,GO:0060284,GO:0065007,GO:0070085,GO:0071704,GO:2000026
Evalue1.46e-47
EggNOG OGsCOG4154@1|root,2RZR7@2759|Eukaryota,3A1QW@33154|Opisthokonta
EC5.1.3.29
DescriptionFucose mutarotase
COG categoryG
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size429
Cds size429
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.7623832-CDS-S-firma_F_contig10817:4367..47071622815624.7623832-CDS-S-firma_F_contig10817:4367..4707Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10817 4368..4707 +
1696949461.958998-CDS-S-firma_F_contig10817:4367..47071696949461.958998-CDS-S-firma_F_contig10817:4367..4707Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10817 4368..4707 +
1622815624.778104-CDS-S-firma_F_contig10817:4765..48541622815624.778104-CDS-S-firma_F_contig10817:4765..4854Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10817 4766..4854 +
1696949461.9729285-CDS-S-firma_F_contig10817:4765..48541696949461.9729285-CDS-S-firma_F_contig10817:4765..4854Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10817 4766..4854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10817.1095.1prot_S-firma_F_contig10817.1095.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10817 4368..4854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10817.1095.1

>prot_S-firma_F_contig10817.1095.1 ID=prot_S-firma_F_contig10817.1095.1|Name=mRNA_S-firma_F_contig10817.1095.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=143bp
MTILKGVPRILSPQLIHVLARMGHGDRLVLADINFPAASVASTTVDGLIR
ADGLTIPALLDAILSLMPLDSAVESPCALMQVMPEHVEAGITTPVWAEYQ
AIADKHEASPVKFHEVERFQFYEEARKCYAVVATGEEALYGNV
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mRNA from alignment at S-firma_F_contig10817:4368..4854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10817.1095.1 ID=mRNA_S-firma_F_contig10817.1095.1|Name=mRNA_S-firma_F_contig10817.1095.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=487bp|location=Sequence derived from alignment at S-firma_F_contig10817:4368..4854+ (Sphaerotrichia firma ET2_F female)
ATGACCATCCTCAAAGGCGTGCCCCGGATTTTGTCCCCCCAACTTATCCA CGTCCTCGCCCGCATGGGCCACGGCGACCGCCTCGTCCTCGCCGACATTA ACTTCCCGGCGGCCAGCGTGGCGTCCACCACCGTTGACGGCCTCATCCGC GCCGACGGCCTCACCATCCCCGCCCTCCTGGATGCCATCCTGTCCCTCAT GCCCCTGGACTCCGCCGTGGAGTCCCCCTGCGCCCTGATGCAGGTCATGC CGGAGCACGTGGAGGCGGGCATCACCACCCCCGTGTGGGCTGAGTACCAG GCCATCGCCGACAAGCACGAGGCCTCCCCCGTGAAGTTCCGTACGTGGGT GGTGTTGTGCGGTGGCCCCTGGTTCCCACCAGTCTGTGTGGCTGTCAGAC GAAGTGGAGCGGTTCCAGTTCTACGAGGAGGCACGCAAGTGCTACGCGGT GGTGGCCACGGGGGAAGAAGCGCTGTACGGCAACGTA
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Coding sequence (CDS) from alignment at S-firma_F_contig10817:4368..4854+

>mRNA_S-firma_F_contig10817.1095.1 ID=mRNA_S-firma_F_contig10817.1095.1|Name=mRNA_S-firma_F_contig10817.1095.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=858bp|location=Sequence derived from alignment at S-firma_F_contig10817:4368..4854+ (Sphaerotrichia firma ET2_F female)
ATGACCATCCTCAAAGGCGTGCCCCGGATTTTGTCCCCCCAACTTATCCA
CGTCCTCGCCCGCATGGGCCACGGCGACCGCCTCGTCCTCGCCGACATTA
ACTTCCCGGCGGCCAGCGTGGCGTCCACCACCGTTGACGGCCTCATCCGC
GCCGACGGCCTCACCATCCCCGCCCTCCTGGATGCCATCCTGTCCCTCAT
GCCCCTGGACTCCGCCGTGGAGTCCCCCTGCGCCCTGATGCAGGTCATGC
CGGAGCACGTGGAGGCGGGCATCACCACCCCCGTGTGGGCTGAGTACCAG
GCCATCGCCGACAAGCACGAGGCCTCCCCCGTGAAGTTCCATGACCATCC
TCAAAGGCGTGCCCCGGATTTTGTCCCCCCAACTTATCCACGTCCTCGCC
CGCATGGGCCACGGCGACCGCCTCGTCCTCGCCGACATTAACTTCCCGGC
GGCCAGCGTGGCGTCCACCACCGTTGACGGCCTCATCCGCGCCGACGGCC
TCACCATCCCCGCCCTCCTGGATGCCATCCTGTCCCTCATGCCCCTGGAC
TCCGCCGTGGAGTCCCCCTGCGCCCTGATGCAGGTCATGCCGGAGCACGT
GGAGGCGGGCATCACCACCCCCGTGTGGGCTGAGTACCAGGCCATCGCCG
ACAAGCACGAGGCCTCCCCCGTGAAGTTCCACGAAGTGGAGCGGTTCCAG
TTCTACGAGGAGGCACGCAAGTGCTACGCGGTGGTGGCCACGGGGGAAGA
AGCGCTGTACGGCAACGTAACGAAGTGGAGCGGTTCCAGTTCTACGAGGA
GGCACGCAAGTGCTACGCGGTGGTGGCCACGGGGGAAGAAGCGCTGTACG
GCAACGTA
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