mRNA_S-firma_F_contig10817.1093.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10817.1093.1
Unique NamemRNA_S-firma_F_contig10817.1093.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10817.1093.1 vs. uniprot
Match: A0A316VTR3_9BASI (Uncharacterized protein (Fragment) n=1 Tax=Ceraceosorus guamensis TaxID=1522189 RepID=A0A316VTR3_9BASI)

HSP 1 Score: 49.7 bits (117), Expect = 3.720e-5
Identity = 20/31 (64.52%), Postives = 22/31 (70.97%), Query Frame = 1 
Query:   10 CGWPACGECFGKASALKVHMRVHTGERPFPC 102
            C W  CG+ F + SAL VHMRVHTGERP  C
Sbjct:   14 CSWKKCGKTFIQRSALTVHMRVHTGERPHQC 44
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BLAST of mRNA_S-firma_F_contig10817.1093.1 vs. uniprot
Match: A0A183SG16_SCHSO (Uncharacterized protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183SG16_SCHSO)

HSP 1 Score: 52.8 bits (125), Expect = 3.750e-5
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    4 HCCGWPACGECFGKASALKVHMRVHTGERPFPC 102
            H C + AC + + K+S LK HMRVHTGE+PFPC
Sbjct:  436 HVCPFGACAKAYSKSSHLKAHMRVHTGEKPFPC 468
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BLAST of mRNA_S-firma_F_contig10817.1093.1 vs. uniprot
Match: A0A0S7HWI4_9TELE (ZN613 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7HWI4_9TELE)

HSP 1 Score: 50.8 bits (120), Expect = 7.630e-5
Identity = 18/28 (64.29%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   19 PACGECFGKASALKVHMRVHTGERPFPC 102
            P CG+CF ++ ALK+H R+HTGERPF C
Sbjct:   13 PLCGKCFTQSGALKIHTRIHTGERPFVC 40
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BLAST of mRNA_S-firma_F_contig10817.1093.1 vs. uniprot
Match: A0A8C4XFP5_ERPCA (Krueppel-like factor 9 n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4XFP5_ERPCA)

HSP 1 Score: 51.2 bits (121), Expect = 8.190e-5
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 EHCCGWPACGECFGKASALKVHMRVHTGERPFP 99
             H C +P C + +GK+S LK H+RVHTGERPFP
Sbjct:  116 NHRCPYPGCDKEYGKSSHLKAHVRVHTGERPFP 148
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BLAST of mRNA_S-firma_F_contig10817.1093.1 vs. uniprot
Match: A0A183RA42_9TREM (Uncharacterized protein n=1 Tax=Schistosoma rodhaini TaxID=6188 RepID=A0A183RA42_9TREM)

HSP 1 Score: 51.6 bits (122), Expect = 9.080e-5
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    4 HCCGWPACGECFGKASALKVHMRVHTGERPFPC 102
            H C +  C + + K+S LK HMRVHTGE+PFPC
Sbjct:  356 HTCPFSTCAKAYSKSSHLKAHMRVHTGEKPFPC 388
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BLAST of mRNA_S-firma_F_contig10817.1093.1 vs. uniprot
Match: A0A4Z2DV00_SCHJA (Krueppel-like factor 7 n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=A0A4Z2DV00_SCHJA)

HSP 1 Score: 51.6 bits (122), Expect = 9.390e-5
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    4 HCCGWPACGECFGKASALKVHMRVHTGERPFPC 102
            H C +  C + + K+S LK HMRVHTGE+PFPC
Sbjct:  427 HTCPFSTCAKAYSKSSHLKAHMRVHTGEKPFPC 459
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BLAST of mRNA_S-firma_F_contig10817.1093.1 vs. uniprot
Match: A0A183VVT6_TRIRE (Uncharacterized protein n=1 Tax=Trichobilharzia regenti TaxID=157069 RepID=A0A183VVT6_TRIRE)

HSP 1 Score: 51.6 bits (122), Expect = 9.400e-5
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    4 HCCGWPACGECFGKASALKVHMRVHTGERPFPC 102
            H C +  C + + K+S LK HMRVHTGE+PFPC
Sbjct:  430 HTCPFSTCAKAYSKSSHLKAHMRVHTGEKPFPC 462
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BLAST of mRNA_S-firma_F_contig10817.1093.1 vs. uniprot
Match: A0A074YYY3_9TREM (Uncharacterized protein n=5 Tax=Opisthorchiidae TaxID=6196 RepID=A0A074YYY3_9TREM)

HSP 1 Score: 51.6 bits (122), Expect = 9.460e-5
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    4 HCCGWPACGECFGKASALKVHMRVHTGERPFPC 102
            H C +  C + + K+S LK HMRVHTGE+PFPC
Sbjct:  449 HTCPFSTCAKAYSKSSHLKAHMRVHTGEKPFPC 481
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BLAST of mRNA_S-firma_F_contig10817.1093.1 vs. uniprot
Match: A0A3Q0KCU9_SCHMA (Putative zinc finger protein n=7 Tax=Schistosoma TaxID=6181 RepID=A0A3Q0KCU9_SCHMA)

HSP 1 Score: 51.6 bits (122), Expect = 9.500e-5
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    4 HCCGWPACGECFGKASALKVHMRVHTGERPFPC 102
            H C +  C + + K+S LK HMRVHTGE+PFPC
Sbjct:  461 HTCPFSTCAKAYSKSSHLKAHMRVHTGEKPFPC 493
[Close]
BLAST of mRNA_S-firma_F_contig10817.1093.1 vs. uniprot
Match: A0A5J4NGP4_9TREM (Uncharacterized protein n=3 Tax=Paragonimus TaxID=34503 RepID=A0A5J4NGP4_9TREM)

HSP 1 Score: 51.6 bits (122), Expect = 9.510e-5
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    4 HCCGWPACGECFGKASALKVHMRVHTGERPFPC 102
            H C +  C + + K+S LK HMRVHTGE+PFPC
Sbjct:  462 HMCPFSTCAKAYSKSSHLKAHMRVHTGEKPFPC 494
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10817.1093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A316VTR3_9BASI3.720e-564.52Uncharacterized protein (Fragment) n=1 Tax=Ceraceo... [more]
A0A183SG16_SCHSO3.750e-560.61Uncharacterized protein n=1 Tax=Schistocephalus so... [more]
A0A0S7HWI4_9TELE7.630e-564.29ZN613 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
A0A8C4XFP5_ERPCA8.190e-560.61Krueppel-like factor 9 n=2 Tax=Polypteridae TaxID=... [more]
A0A183RA42_9TREM9.080e-557.58Uncharacterized protein n=1 Tax=Schistosoma rodhai... [more]
A0A4Z2DV00_SCHJA9.390e-557.58Krueppel-like factor 7 n=1 Tax=Schistosoma japonic... [more]
A0A183VVT6_TRIRE9.400e-557.58Uncharacterized protein n=1 Tax=Trichobilharzia re... [more]
A0A074YYY3_9TREM9.460e-557.58Uncharacterized protein n=5 Tax=Opisthorchiidae Ta... [more]
A0A3Q0KCU9_SCHMA9.500e-557.58Putative zinc finger protein n=7 Tax=Schistosoma T... [more]
A0A5J4NGP4_9TREM9.510e-557.58Uncharacterized protein n=3 Tax=Paragonimus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10817contigS-firma_F_contig10817:207..659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog31033.ENSTRUP00000001066
Preferred nameklf9
PFAMszf-C2H2
Max annot lvl33208|Metazoa
KEGG koko:K09208
Evalue1.58e-08
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,3A20W@33154|Opisthokonta,3BQV2@33208|Metazoa,3D7UH@33213|Bilateria,48EY1@7711|Chordata,49BSQ@7742|Vertebrata,4A3RS@7898|Actinopterygii
Descriptionfactor 9
COG categoryS
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size453
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.5783615-CDS-S-firma_F_contig10817:206..6591622815624.5783615-CDS-S-firma_F_contig10817:206..659Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10817 207..659 +
1696949461.853315-CDS-S-firma_F_contig10817:206..6591696949461.853315-CDS-S-firma_F_contig10817:206..659Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10817 207..659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10817.1093.1prot_S-firma_F_contig10817.1093.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10817 207..659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10817.1093.1

>prot_S-firma_F_contig10817.1093.1 ID=prot_S-firma_F_contig10817.1093.1|Name=mRNA_S-firma_F_contig10817.1093.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=151bp
EHCCGWPACGECFGKASALKVHMRVHTGERPFPCTWPGCEYAAKTASTLK
QHMAGRHSEEKPFPCQWPGCEYAAKEASGLKQHMAGRHSDERPFPCQWPG
CEYAAKEAGRLKRHMATHTDDKPFPCPVPGCEYASKRAGGLNRHTRKHHP
*
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mRNA from alignment at S-firma_F_contig10817:207..659+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10817.1093.1 ID=mRNA_S-firma_F_contig10817.1093.1|Name=mRNA_S-firma_F_contig10817.1093.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=453bp|location=Sequence derived from alignment at S-firma_F_contig10817:207..659+ (Sphaerotrichia firma ET2_F female)
GAGCACTGCTGCGGGTGGCCGGCATGCGGGGAGTGTTTCGGGAAGGCCAG
CGCGCTGAAGGTGCACATGCGGGTGCACACGGGGGAGCGTCCATTCCCGT
GTACGTGGCCGGGGTGCGAGTACGCCGCCAAGACGGCCAGCACCCTGAAG
CAGCACATGGCTGGGCGTCACTCGGAGGAGAAGCCGTTCCCCTGCCAGTG
GCCTGGATGCGAGTATGCGGCCAAGGAGGCCAGCGGCCTGAAGCAACACA
TGGCTGGACGCCACTCCGATGAGCGTCCATTCCCCTGTCAGTGGCCTGGA
TGCGAGTATGCGGCCAAGGAAGCCGGCAGGCTGAAGCGGCACATGGCCAC
CCACACCGACGACAAGCCGTTTCCCTGCCCAGTGCCTGGATGTGAGTACG
CCTCCAAAAGGGCCGGTGGCCTCAACAGGCACACGAGGAAGCACCACCCG
TAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10817:207..659+

>mRNA_S-firma_F_contig10817.1093.1 ID=mRNA_S-firma_F_contig10817.1093.1|Name=mRNA_S-firma_F_contig10817.1093.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=906bp|location=Sequence derived from alignment at S-firma_F_contig10817:207..659+ (Sphaerotrichia firma ET2_F female)
GAGCACTGCTGCGGGTGGCCGGCATGCGGGGAGTGTTTCGGGAAGGCCAG
CGCGCTGAAGGTGCACATGCGGGTGCACACGGGGGAGCGTCCATTCCCGT
GTACGTGGCCGGGGTGCGAGTACGCCGCCAAGACGGCCAGCACCCTGAAG
CAGCACATGGCTGGGCGTCACTCGGAGGAGAAGCCGTTCCCCTGCCAGTG
GCCTGGATGCGAGTATGCGGCCAAGGAGGCCAGCGGCCTGAAGCAACACA
TGGCTGGACGCCACTCCGATGAGCGTCCATTCCCCTGTCAGTGGCCTGGA
TGCGAGTATGCGGCCAAGGAAGCCGGCAGGCTGAAGCGGCACATGGCCAC
CCACACCGACGACAAGCCGTTTCCCTGCCCAGTGCCTGGATGTGAGTACG
CCTCCAAAAGGGCCGGTGGCCTCAACAGGCACACGAGGAAGCACCACCCG
TAGGAGCACTGCTGCGGGTGGCCGGCATGCGGGGAGTGTTTCGGGAAGGC
CAGCGCGCTGAAGGTGCACATGCGGGTGCACACGGGGGAGCGTCCATTCC
CGTGTACGTGGCCGGGGTGCGAGTACGCCGCCAAGACGGCCAGCACCCTG
AAGCAGCACATGGCTGGGCGTCACTCGGAGGAGAAGCCGTTCCCCTGCCA
GTGGCCTGGATGCGAGTATGCGGCCAAGGAGGCCAGCGGCCTGAAGCAAC
ACATGGCTGGACGCCACTCCGATGAGCGTCCATTCCCCTGTCAGTGGCCT
GGATGCGAGTATGCGGCCAAGGAAGCCGGCAGGCTGAAGCGGCACATGGC
CACCCACACCGACGACAAGCCGTTTCCCTGCCCAGTGCCTGGATGTGAGT
ACGCCTCCAAAAGGGCCGGTGGCCTCAACAGGCACACGAGGAAGCACCAC
CCGTAG
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