mRNA_S-firma_F_contig10812.1089.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10812.1089.1
Unique NamemRNA_S-firma_F_contig10812.1089.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10812.1089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10812contigS-firma_F_contig10812:2837..4038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_001110.1
Exons2
Model size916
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10812.1089.1prot_S-firma_F_contig10812.1089.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10812 3044..3536 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.2813675-UTR-S-firma_F_contig10812:2836..30431622815624.2813675-UTR-S-firma_F_contig10812:2836..3043Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10812 2837..3043 +
1696949461.6271017-UTR-S-firma_F_contig10812:2836..30431696949461.6271017-UTR-S-firma_F_contig10812:2836..3043Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10812 2837..3043 +
1622815624.3198028-UTR-S-firma_F_contig10812:3536..40381622815624.3198028-UTR-S-firma_F_contig10812:3536..4038Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10812 3537..4038 +
1696949461.6600893-UTR-S-firma_F_contig10812:3536..40381696949461.6600893-UTR-S-firma_F_contig10812:3536..4038Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10812 3537..4038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.2949643-CDS-S-firma_F_contig10812:3043..31671622815624.2949643-CDS-S-firma_F_contig10812:3043..3167Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10812 3044..3167 +
1696949461.6361036-CDS-S-firma_F_contig10812:3043..31671696949461.6361036-CDS-S-firma_F_contig10812:3043..3167Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10812 3044..3167 +
1622815624.3064206-CDS-S-firma_F_contig10812:3453..35361622815624.3064206-CDS-S-firma_F_contig10812:3453..3536Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10812 3454..3536 +
1696949461.6495194-CDS-S-firma_F_contig10812:3453..35361696949461.6495194-CDS-S-firma_F_contig10812:3453..3536Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10812 3454..3536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10812.1089.1

>prot_S-firma_F_contig10812.1089.1 ID=prot_S-firma_F_contig10812.1089.1|Name=mRNA_S-firma_F_contig10812.1089.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=69bp
MTADGEGKLGFETSSHLNARFLCRSIDFLVSAAVQHNNNLNGRDVSKTSS
LRSTGTDNDFCVALSSVN*
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mRNA from alignment at S-firma_F_contig10812:2837..4038+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10812.1089.1 ID=mRNA_S-firma_F_contig10812.1089.1|Name=mRNA_S-firma_F_contig10812.1089.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1202bp|location=Sequence derived from alignment at S-firma_F_contig10812:2837..4038+ (Sphaerotrichia firma ET2_F female)
CACAATGTGGGCTCTTGACAGTCCGTCATGACGTAACGGCCAACGCGCAC
GGTGTTCTTGTGTGTTGAAAGGACGTACCAAGCGATTTGGCGTTGTGGTT
GGACAACTAACTCCGTGTGTAAGCAAGCCCACGTCTCGCTTCCTTTCACG
ATTCAGTCCTACGGATCCAAGCTGCCATCTCCCGTGTGTTGCTGACAGTG
CGTATGGATGACGGCGGATGGAGAAGGAAAGCTTGGCTTTGAGACCAGCA
GCCATCTTAACGCGAGATTTTTGTGCCGGTCCATCGACTTCCTCGTCTCG
GCTGCTGTTCAGCACAACAACAACCTCAACGGTGGGATAGACAGACTTGA
GCGCCTAACCAAATACGAAATTACAACGGAACACGTCGGGCTGATACATG
AAATGGTCAAGCAAACTCTCATGCCAAGAAGTGTCGTCTCGACCCTGAGC
GTGCCGACGAAAGCCCCGTGCTTTCGTCTTATCGACATCATGCCCTGGCG
AAAAAGCTGTTCGCTTCGATTAAATGCTAGTGCAGCCTACAAGTGCAGAG
CCTTTGTTTACTATCGCTTCGACCCCGATCGCTGTTCGTATCTTCGCGGC
TCTTTCCTCGTCTACAGGCCGAGATGTGTCCAAGACGTCTTCTCTTAGGT
CAACCGGAACCGACAACGATTTCTGCGTTGCCCTCTCGTCAGTAAATTGA
ACTCTTGAACGATGGGGGCAGGTGTCAGTGCTCACAGCTAACGCCGACAA
ACAAGCGCACAAACAAATGCTGCCGGTTTGCGAACTTGATGGGGGTTTTC
GTGTTTCCCGTGGTGAGAAAGGTCGTAGATCAGCAATGTGCTGCATGGAG
ACAATGAAAATGGTACGCCGCCCCCTTGGCTTGACTGAGCACTGCTGTTC
GCACCACGACTGACACGTGGAATTTCCCCCTAGTTAACCCTAAACTCAAG
TGTCGGTGGCATGGACGTGCTGTATCCGCAAAGCAATCGAAATTCTGTTA
GCTTGGGTGAGGTGATCGTGCGTACATTGAGTTTGAAGACGCGCCAAGAG
GCGTAGCCCCAGCAGTTGGGCGAGGGAGATGTCCCTTGGTACGCTTGGAT
CTACTATATCTGACGTGTCTCCACCGTTCATATCGTTCGACCGGCGATAC
GGCTTGCGTAGATAGTCTACAACTGGGCAAAAAGTTGGACATTCAATTGA
AC
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Coding sequence (CDS) from alignment at S-firma_F_contig10812:2837..4038+

>mRNA_S-firma_F_contig10812.1089.1 ID=mRNA_S-firma_F_contig10812.1089.1|Name=mRNA_S-firma_F_contig10812.1089.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=414bp|location=Sequence derived from alignment at S-firma_F_contig10812:2837..4038+ (Sphaerotrichia firma ET2_F female)
ATGACGGCGGATGGAGAAGGAAAGCTTGGCTTTGAGACCAGCAGCCATCT
TAACGCGAGATTTTTGTGCCGGTCCATCGACTTCCTCGTCTCGGCTGCTG
TTCAGCACAACAACAACCTCAACGATGACGGCGGATGGAGAAGGAAAGCT
TGGCTTTGAGACCAGCAGCCATCTTAACGCGAGATTTTTGTGCCGGTCCA
TCGACTTCCTCGTCTCGGCTGCTGTTCAGCACAACAACAACCTCAACGGC
CGAGATGTGTCCAAGACGTCTTCTCTTAGGTCAACCGGAACCGACAACGA
TTTCTGCGTTGCCCTCTCGTCAGTAAATTGAGCCGAGATGTGTCCAAGAC
GTCTTCTCTTAGGTCAACCGGAACCGACAACGATTTCTGCGTTGCCCTCT
CGTCAGTAAATTGA
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