mRNA_S-firma_F_contig10809.1086.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10809.1086.1
Unique NamemRNA_S-firma_F_contig10809.1086.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10809.1086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10809contigS-firma_F_contig10809:4365..4932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_000970.1
Exons2
Model size257
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.8244371-CDS-S-firma_F_contig10809:4364..44481622815623.8244371-CDS-S-firma_F_contig10809:4364..4448Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10809 4365..4448 +
1696949461.2164297-CDS-S-firma_F_contig10809:4364..44481696949461.2164297-CDS-S-firma_F_contig10809:4364..4448Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10809 4365..4448 +
1622815623.8370545-CDS-S-firma_F_contig10809:4760..49311622815623.8370545-CDS-S-firma_F_contig10809:4760..4931Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10809 4761..4931 +
1696949461.2258914-CDS-S-firma_F_contig10809:4760..49311696949461.2258914-CDS-S-firma_F_contig10809:4760..4931Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10809 4761..4931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10809.1086.1prot_S-firma_F_contig10809.1086.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10809 4365..4931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10809.1086.1

>prot_S-firma_F_contig10809.1086.1 ID=prot_S-firma_F_contig10809.1086.1|Name=mRNA_S-firma_F_contig10809.1086.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=85bp
GGNKKGVEYHHMHEILGMGQPPLEFDKKVVYHLIHDTLEWCYDTIDMDRK
AHYDNNPPNSRDDSQGSASDLALDPAVQQKAHEER
back to top

mRNA from alignment at S-firma_F_contig10809:4365..4932+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10809.1086.1 ID=mRNA_S-firma_F_contig10809.1086.1|Name=mRNA_S-firma_F_contig10809.1086.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=568bp|location=Sequence derived from alignment at S-firma_F_contig10809:4365..4932+ (Sphaerotrichia firma ET2_F female)
GGGGGCAACAAAAAGGGAGTCGAGTACCATCACATGCACGAGATTCTGGG
CATGGGGCAGCCCCCTCTAGAATTCGACAAGAAGGTGAGACGAGCCATGA
GGCATGAGGCTGAGTGCCGGGGGAAACGATGAATTATTTGCTGGGGAGTA
TGATTTTGCGGCATGAGTATATGGTTAGGATCGAATCCTCGGACGCCCTT
CTCGAGATTTCTGTTGCCCTGACAATAAGAAACCGACTCAAACACTGCGC
GGCTTTTGCGCCTTGAAGGAGGAGGGGTTGAAATATATGACGGTAGCGTG
CGAGGTGTTCGCTATCATTTATCTATTGGAAGCTTTTTCGCACTGAAGGT
CGCCCCTCCGCCCCCCCAACCGAATAACGCCCGTTTTGAAAACCAGGTGG
TGTACCACCTCATTCATGATACCTTGGAGTGGTGCTACGACACCATCGAC
ATGGACCGGAAGGCACACTACGACAACAACCCCCCGAATAGCCGCGATGA
CTCTCAGGGTTCGGCGAGTGACCTGGCGCTAGATCCTGCTGTCCAACAGA
AAGCTCATGAGGAGCGGG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10809:4365..4932+

>mRNA_S-firma_F_contig10809.1086.1 ID=mRNA_S-firma_F_contig10809.1086.1|Name=mRNA_S-firma_F_contig10809.1086.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=510bp|location=Sequence derived from alignment at S-firma_F_contig10809:4365..4932+ (Sphaerotrichia firma ET2_F female)
GGGGGCAACAAAAAGGGAGTCGAGTACCATCACATGCACGAGATTCTGGG
CATGGGGCAGCCCCCTCTAGAATTCGACAAGAAGGGGGGCAACAAAAAGG
GAGTCGAGTACCATCACATGCACGAGATTCTGGGCATGGGGCAGCCCCCT
CTAGAATTCGACAAGAAGGTGGTGTACCACCTCATTCATGATACCTTGGA
GTGGTGCTACGACACCATCGACATGGACCGGAAGGCACACTACGACAACA
ACCCCCCGAATAGCCGCGATGACTCTCAGGGTTCGGCGAGTGACCTGGCG
CTAGATCCTGCTGTCCAACAGAAAGCTCATGAGGAGCGGGTGGTGTACCA
CCTCATTCATGATACCTTGGAGTGGTGCTACGACACCATCGACATGGACC
GGAAGGCACACTACGACAACAACCCCCCGAATAGCCGCGATGACTCTCAG
GGTTCGGCGAGTGACCTGGCGCTAGATCCTGCTGTCCAACAGAAAGCTCA
TGAGGAGCGG
back to top